mRNA_H-elongata_contig130473.2213.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130473.2213.1
Unique NamemRNA_H-elongata_contig130473.2213.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: D8LDN3_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.510e-35
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGLFFA--VSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            P+FTIP+GCYALVT+ GAD+DY  GQAVWP G H GL +   VSNLVT+QNVVFDMPVKGC T+DNVTVEIDVAIVFRIMGD
Sbjct:   37 PFFTIPEGCYALVTDAGADIDYSDGQAVWPAGFHMGLPWRLKVSNLVTKQNVVFDMPVKGCITRDNVTVEIDVAIVFRIMGD 118          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S2HPB6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HPB6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.430e-30
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    4 WFTIPQGCYALVTEHGADVDYV----TGQAVWPPGLHWGL--FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            WFTIP GCYA+VT HGAD+DY     T  AVWPPGLH+    +  VSNLVT+Q++V D+PVK CKTKDNVTV IDVA+ FRIMGD
Sbjct:   58 WFTIPDGCYAIVTRHGADLDYTHSDGTTTAVWPPGLHYPYPPWIGVSNLVTKQSIVLDLPVKACKTKDNVTVNIDVALAFRIMGD 142          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A6S9IEP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IEP5_HETAK)

HSP 1 Score: 120 bits (302), Expect = 1.990e-30
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    4 WFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            WFTIP+G YALVT HGAD +Y  G AVWP G+H G  +  VS+LVT+Q+VVFDMPVKGCKT DNVTVEIDV + FRIMGD
Sbjct:   39 WFTIPEGMYALVTRHGADENYSGGGAVWPAGIHMGPPWLKVSHLVTKQSVVFDMPVKGCKTMDNVTVEIDVCVTFRIMGD 118          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S4KFS0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFS0_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 1.270e-29
Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            PWF++P GCYALVT  G D+DY  G  VWP G + G+ ++ V N+VT+Q+VVF+MPVKGCKT+DNVTV+I+++IVFRIMGD
Sbjct:   42 PWFSVPDGCYALVTRFGKDIDYEDGNPVWPAGFYTGMPWYKVQNIVTKQSVVFNMPVKGCKTQDNVTVQINLSIVFRIMGD 122          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S1ZS35_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZS35_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.370e-28
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    7 FTIPQGCYALVTEHGADVDYV----TGQAVWPPGLH--WGLFFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            FTIP GCYALVT HGAD+DY     T  AVWPPGLH  +  +  VSNLVT+Q++V D+PVK CKTKDNVTV ID+++VFRIMGD
Sbjct:   57 FTIPDGCYALVTRHGADLDYTHPDGTTSAVWPPGLHVPFPPWVGVSNLVTKQSIVLDLPVKACKTKDNVTVNIDMSLVFRIMGD 140          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S0EDM3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EDM3_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 1.770e-28
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            PWFT+P GCYALVT  G D DY  GQ +WP G H+G  +  V  LVT+Q+VVF+MPVKGCKT DNVTV+I++A+VFR+M D
Sbjct:   69 PWFTVPDGCYALVTRFGKDEDYAEGQPIWPAGFHFGPPWLKVEFLVTKQSVVFNMPVKGCKTADNVTVQINLAVVFRVMAD 149          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S2UMA1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMA1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.960e-28
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    4 WFTIPQGCYALVTEHGADVDYV----TGQAVWPPGLH--WGLFFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            +FTIP GCYA+VT HGAD+DY     T  AVWP GLH  +  +F VS LVT+Q+VV D+PVK CKTKDNVTV +DV++VFRIMGD
Sbjct:   41 YFTIPSGCYAIVTRHGADIDYENPDGTRTAVWPAGLHPFYPPWFGVSQLVTKQSVVLDLPVKACKTKDNVTVNVDVSLVFRIMGD 125          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S3AUG6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AUG6_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 8.510e-28
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            PWF++P GCYALVT  G D+ Y     VWP G  WG  +  VSN+VT+Q+VVF+MPVKGCKT+DNVTV+I++A+VFRIMGD
Sbjct:   38 PWFSVPDGCYALVTRFGKDLMYEGDNPVWPAGFFWGPPWTKVSNIVTKQSVVFNMPVKGCKTQDNVTVQINLAVVFRIMGD 118          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S4JLX9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JLX9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.200e-27
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    7 FTIPQGCYALVTEHGADVDYV----TGQAVWPPGLHWGL--FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            FT+P GCYALVTEHGAD+DYV       A WP GLH+    +  VS+LVT+Q+VV DMPVK C+T+DNV V +DVA+VFRIMGD
Sbjct:   48 FTVPSGCYALVTEHGADLDYVDDDENASAAWPAGLHYPYPPWVRVSHLVTKQSVVLDMPVKACRTRDNVAVNVDVALVFRIMGD 131          
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S4UKA1_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UKA1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.390e-26
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    4 WFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
            +FTIP+G YALVT HGA VD+  G  VWP GLH+G  +  VS+LVT+Q++VF+ PVKGCKTKDNVTV ID+ IVFR+MGD
Sbjct:   48 FFTIPEGFYALVTRHGARVDF-NGSPVWPSGLHFGPPWLKVSHLVTKQSMVFNTPVKGCKTKDNVTVAIDMGIVFRVMGD 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN3_ECTSI7.510e-3578.05PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2HPB6_9STRA1.430e-3067.06Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S9IEP5_HETAK1.990e-3071.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4KFS0_9EUKA1.270e-2962.96Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S1ZS35_9STRA1.370e-2866.67Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0EDM3_9EUKA1.770e-2862.96Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S2UMA1_9STRA4.960e-2864.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3AUG6_9EUKA8.510e-2862.96Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4JLX9_9STRA7.200e-2763.10Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4UKA1_9STRA5.390e-2666.25Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130473contigH-elongata_contig130473:1158..1824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.1e-29
Seed eggNOG ortholog2880.D8LDN3
EggNOG free text desc.SPFH domain / Band 7 family
EggNOG OGs28PCB@1,2RY9Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.3975382-CDS-H-elongata_contig130473:1157..12351622929775.3975382-CDS-H-elongata_contig130473:1157..1235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130473 1158..1235 +
1691679153.0788105-CDS-H-elongata_contig130473:1157..12351691679153.0788105-CDS-H-elongata_contig130473:1157..1235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130473 1158..1235 +
1622929775.4126732-CDS-H-elongata_contig130473:1662..18241622929775.4126732-CDS-H-elongata_contig130473:1662..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130473 1663..1824 +
1691679153.0935898-CDS-H-elongata_contig130473:1662..18241691679153.0935898-CDS-H-elongata_contig130473:1662..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130473 1663..1824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130473.2213.1prot_H-elongata_contig130473.2213.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130473 1158..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130473.2213.1

>prot_H-elongata_contig130473.2213.1 ID=prot_H-elongata_contig130473.2213.1|Name=mRNA_H-elongata_contig130473.2213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGLFFAVSNLVTQQNV
VFDMPVKGCKTKDNVTVEIDVAIVFRIMGD
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mRNA from alignment at H-elongata_contig130473:1158..1824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130473.2213.1 ID=mRNA_H-elongata_contig130473.2213.1|Name=mRNA_H-elongata_contig130473.2213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=667bp|location=Sequence derived from alignment at H-elongata_contig130473:1158..1824+ (Himanthalia elongata Himel1 dioecious)
CCTTGGTTCACTATTCCGCAAGGGTGCTACGCGCTGGTCACCGAACACGG CGCTGATGTAGACTACGTTACTGGCCAGGTAGATCACAACGACATTACAT ACAAGTATGGACTGCAGGACCGTGGGAGTAGGCCACAATCGCATACGGTA TGCTCTACACAACCAAGATTAATTTTGCCTCCTTAAGATTAAGCCATGAT AGTCATTCTCCGCGGAATCTCTCGAAGAACGTCATATGCCAAAAAGGCGT CAATGACGGAGTTCCTCATCGGCATTTCGCCCCGTGGTTATTCCTCTAGA ACGCAAGTGTTATTGATTACAGACTTGCACACTTAGTAGCGCGACCAGCC GTCAGCGGGCGTGAGGCTTGTTCGGCAGCTGTGCACGACGAAGGCAACTC TCCCGAAGCATAGACGTTAATATATTTTGGGACTCATCTGTGCGCCAAGT AAGGCACGTCTAAAGGAGAAACATATCAATTTCTCACCTCATTGCTCGCC GACAGGCGGTTTGGCCACCAGGACTCCACTGGGGGCTGTTTTTCGCCGTT TCTAACTTAGTGACGCAACAGAACGTGGTTTTCGACATGCCCGTAAAAGG CTGCAAGACTAAGGACAACGTCACCGTCGAGATAGACGTCGCCATCGTGT TCCGAATTATGGGCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig130473:1158..1824+

>mRNA_H-elongata_contig130473.2213.1 ID=mRNA_H-elongata_contig130473.2213.1|Name=mRNA_H-elongata_contig130473.2213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig130473:1158..1824+ (Himanthalia elongata Himel1 dioecious)
CCTTGGTTCACTATTCCGCAAGGGTGCTACGCGCTGGTCACCGAACACGG
CGCTGATGTAGACTACGTTACTGGCCAGCCTTGGTTCACTATTCCGCAAG
GGTGCTACGCGCTGGTCACCGAACACGGCGCTGATGTAGACTACGTTACT
GGCCAGGCGGTTTGGCCACCAGGACTCCACTGGGGGCTGTTTTTCGCCGT
TTCTAACTTAGTGACGCAACAGAACGTGGTTTTCGACATGCCCGTAAAAG
GCTGCAAGACTAAGGACAACGTCACCGTCGAGATAGACGTCGCCATCGTG
TTCCGAATTATGGGCGACGCGGTTTGGCCACCAGGACTCCACTGGGGGCT
GTTTTTCGCCGTTTCTAACTTAGTGACGCAACAGAACGTGGTTTTCGACA
TGCCCGTAAAAGGCTGCAAGACTAAGGACAACGTCACCGTCGAGATAGAC
GTCGCCATCGTGTTCCGAATTATGGGCGAC
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