mRNA_H-elongata_contig13044.2211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13044.2211.1
Unique NamemRNA_H-elongata_contig13044.2211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13044.2211.1 vs. uniprot
Match: D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.840e-22
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 VRQSAKLSGQQYYEPDEKKSILATPDVRPRKWRQAEVAVGYFKIRKWIPKDQQNLTAELHGGLTDPADVAAAAKHQLNFRIGKSSSRLKNRTR 279
            VRQSAK +   YY PDEK S+ +TP VRPR WR A+VA GYF +++W+P+DQQ+LTA LHGGLTDPA++AAA K  L     K+S+R K+R R
Sbjct:   10 VRQSAKHAST-YYIPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAA-KQSLRAN-SKASTRFKSRNR 99
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BLAST of mRNA_H-elongata_contig13044.2211.1 vs. uniprot
Match: A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-10
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 VRQSAKLSGQQYYE-PDEKKSILATPDVRPRKWRQAEVAVGYFKIRKWIPKDQQNLTAELHGGLTDPADVAAAAKHQLNFRIGKSSSRLKNR 273
            VRQSA+   + Y +   E+ S+LA  D+R R+W++ EV +G FK++KW+PK QQ+LTAELH    D       +K +L  RI  S   L++R
Sbjct:   13 VRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELHEHKADTGHRLKKSK-RLKGRIPPSKRGLRSR 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13044.2211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB3_ECTSI3.840e-2259.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBY9_9STRA3.850e-1042.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13044contigH-elongata_contig13044:2129..4579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1238
Cds size642
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13044.2211.1prot_H-elongata_contig13044.2211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13044 2129..3984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.2418354-CDS-H-elongata_contig13044:2128..22301622929775.2418354-CDS-H-elongata_contig13044:2128..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13044 2129..2230 +
1691679153.0025718-CDS-H-elongata_contig13044:2128..22301691679153.0025718-CDS-H-elongata_contig13044:2128..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13044 2129..2230 +
1622929775.2591417-CDS-H-elongata_contig13044:3096..32161622929775.2591417-CDS-H-elongata_contig13044:3096..3216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13044 3097..3216 +
1691679153.0115006-CDS-H-elongata_contig13044:3096..32161691679153.0115006-CDS-H-elongata_contig13044:3096..3216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13044 3097..3216 +
1622929775.2750363-CDS-H-elongata_contig13044:3564..39841622929775.2750363-CDS-H-elongata_contig13044:3564..3984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13044 3565..3984 +
1691679153.0211618-CDS-H-elongata_contig13044:3564..39841691679153.0211618-CDS-H-elongata_contig13044:3564..3984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13044 3565..3984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.2893455-UTR-H-elongata_contig13044:3984..45791622929775.2893455-UTR-H-elongata_contig13044:3984..4579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13044 3985..4579 +
1691679153.0307646-UTR-H-elongata_contig13044:3984..45791691679153.0307646-UTR-H-elongata_contig13044:3984..4579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13044 3985..4579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13044.2211.1

>prot_H-elongata_contig13044.2211.1 ID=prot_H-elongata_contig13044.2211.1|Name=mRNA_H-elongata_contig13044.2211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
VRQSAKLSGQQYYEPDEKKSILATPDVRPRKWRQAEVAVGYFKIRKWIPK
DQQNLTAELHGGLTDPADVAAAAKHQLNFRIGKSSSRLKNRTRAAAAAAA
AVPGGTPSRSQAITTASRVGGRTSPVGSFGAASPPWDASQSPPPGPSPPN
IPTSSMSPGGMPYTGAMTVGSSSSSKPFSAQGVDKRRDLGDIRTLAGIGG
AVPCDPPSHLMEK*
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mRNA from alignment at H-elongata_contig13044:2129..4579+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13044.2211.1 ID=mRNA_H-elongata_contig13044.2211.1|Name=mRNA_H-elongata_contig13044.2211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2451bp|location=Sequence derived from alignment at H-elongata_contig13044:2129..4579+ (Himanthalia elongata Himel1 dioecious)
GTGCGACAGTCGGCGAAGCTCTCCGGGCAGCAGTACTACGAGCCTGATGA
GAAGAAGAGTATTCTCGCCACGCCCGACGTTCGACCCAGGAAATGGCGGC
AGGTGAGCGAAAGAAGGAAGGAAAAGAAGGATCGATCAAGGCACAGCCTT
TACGACAGTGTTACAGCATATGTCAGTATTCCCGCCTTGCCTCGTTTTCG
TCACCAAACTCGTTTTCTCACAAAACTCAGATCGGTTTTACTCTGGGAAG
GGGGAAGGGATACCATCCTCTTTCCCCCAATGTTACCCCTCCTGCGCATT
GTCGGGAGGGCTTCTTCTTTCGGATACTATGTACTATTAATCATATCATT
TAGTAGATAGCGTGTATAGAGGGACATTAGACCCCTTCGTAGCGTAGAAA
ATGATGCGGCTTGGTTGAGCGCTGTGACCGGTTCTTGGAATGATGGGTTT
GCTGCTGCTACTGCAGGCTCTGTCGACACGAGAGCGACAGTATTCCTTCG
ATTTCCGAATCCACTACGCTGGCGACGAACGAGAAGATGGGTTGGAATCT
ACGGATGATGATTTTGGCGTCCTCAAGAAACTCATGACGTTATTAGACGG
TTAGCTGTGCGCGGAGAGATATTAGTTGGGAGGGAGATACCCGGATGTAG
ATGAAGATTGCGACTGCAAGTGCTAGTTTCGACACATCCTTGACATTTCG
AGGGTCTCCCCGTTGCGCTTGATATCGTTAAAACCCTGACGCCGTTCGGG
GGTGCGGTTGCAAGTGTAGTCGGTCACGTCTGAGTTTCAATTGGGCTCTT
CGGTCCACTACGCCGCTGTCGCGGTGTCAGACCCTGTTAATTGATGGTCG
AGGGATGAAAACCCTTATCCTTTTATGTTCCCGTTCTGCCCATGTCTGGT
CTGGTCTGGTCTGTCCTCGTGCGCTGATCACCTTTCTGACGCTATTGACG
TGTTGACTCTTTGCTCAGGCTGAGGTCGCGGTAGGGTACTTCAAAATCCG
GAAATGGATTCCCAAGGACCAGCAAAACCTTACTGCGGAGCTTCACGGTG
GGCTCACCGACCCAGCCGATGTTGCCGCTGCTGCCAAGGTGAGGCGCACG
CCGACCGGTGAAAGCGCCTTAAATATATAATATGCTATAAATTATAGAGA
TTTCGCGCTCTTCGTCCAACCCAGGACACTGGTATACCTGCTGCACAGTT
CGTAGCCCTTCCGCCCTTCATTCCTCCCTATCCTTCAGGCCTCTAACGCC
TTCCTGTTGATACTGAGACAAAACCTTTTGGGGAATAACACTTGTGACGA
TGCCTACGATGATATTCCACCTTGATGTTTTTATACTTTTCGAATGGTAC
GTGTTCCTCCTGGAGACTACATATCCTGTCTTAGCTTATACTTCGTGAAC
CTTCCGCCCCCTCGCCTAAACACGATCGTTTTTTAGCACCAGCTCAACTT
TCGGATAGGCAAATCGTCCTCGAGGTTGAAAAACAGGACCCGGGCCGCGG
CCGCGGCTGCGGCGGCCGTCCCAGGTGGCACGCCCTCGAGGTCGCAGGCA
ATAACCACTGCCAGTCGAGTTGGCGGACGCACGTCCCCTGTCGGAAGCTT
TGGGGCGGCAAGTCCGCCGTGGGATGCTAGCCAGTCTCCTCCTCCGGGCC
CTTCCCCTCCTAATATCCCCACATCTTCGATGTCGCCCGGTGGGATGCCT
TACACGGGCGCCATGACAGTGGGTAGTAGTAGCAGTAGTAAACCATTTAG
CGCACAAGGCGTTGACAAGAGAAGGGACCTTGGGGATATACGGACGTTGG
CAGGGATTGGAGGGGCCGTGCCTTGCGATCCCCCGTCGCACTTAATGGAG
AAATAGGTTCCAGTGCCGGATAGATTGGACCGGTTGTTTTCTTCCCGTTC
TCCAGTGCCTTGCGGCGGCCCGACGCTTTAACGGTTTTATGTCCGTCCAC
GTACGAGCTCGCGGAGAGAGGAATGATTTTTTTTTGTCTCCGTATCTTTC
GAGCAAGCGTCGAGGTTTGGAGGGGTCCTTGCCTGCTCCGGAGGATTTCT
CCAGGCCGTCGTATTTATGCATCACCTACTAAGGCAGGAGTAAAGGAAGT
CGGGACTCCATTGATATAAGGAGCTTCGACCACCGTAGGTATGTTTTTGG
TTCTTCGAATACTGCAACAGAGAGTCCTTTGAACGTTAGTGCCTTGGATC
CGGGGGCGGGGGAGGCGGGTGCTGGGAAAATGGCTCCCGGGGGCGGGAAG
CGACTGCGGCTTCACGATGGACAGGAGTAGCCATAAAGTTAAGAGCTACT
GTACATTCATAATATGTCTTAAGGTAGGTTCGAGGTGCAACAGCATAAAA
CAGTAGAAGTATCAGGTGTCGTTCGGTGCGAGGTGTCGTTCGGTGCGTTA
CTTGCATTCAAGAAACTCTTTGTTACTGTACAAATTTATCAAGGAAACGA
G
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Coding sequence (CDS) from alignment at H-elongata_contig13044:2129..4579+

>mRNA_H-elongata_contig13044.2211.1 ID=mRNA_H-elongata_contig13044.2211.1|Name=mRNA_H-elongata_contig13044.2211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig13044:2129..4579+ (Himanthalia elongata Himel1 dioecious)
GTGCGACAGTCGGCGAAGCTCTCCGGGCAGCAGTACTACGAGCCTGATGA
GAAGAAGAGTATTCTCGCCACGCCCGACGTTCGACCCAGGAAATGGCGGC
AGGTGCGACAGTCGGCGAAGCTCTCCGGGCAGCAGTACTACGAGCCTGAT
GAGAAGAAGAGTATTCTCGCCACGCCCGACGTTCGACCCAGGAAATGGCG
GCAGGCTGAGGTCGCGGTAGGGTACTTCAAAATCCGGAAATGGATTCCCA
AGGACCAGCAAAACCTTACTGCGGAGCTTCACGGTGGGCTCACCGACCCA
GCCGATGTTGCCGCTGCTGCCAAGGCTGAGGTCGCGGTAGGGTACTTCAA
AATCCGGAAATGGATTCCCAAGGACCAGCAAAACCTTACTGCGGAGCTTC
ACGGTGGGCTCACCGACCCAGCCGATGTTGCCGCTGCTGCCAAGCACCAG
CTCAACTTTCGGATAGGCAAATCGTCCTCGAGGTTGAAAAACAGGACCCG
GGCCGCGGCCGCGGCTGCGGCGGCCGTCCCAGGTGGCACGCCCTCGAGGT
CGCAGGCAATAACCACTGCCAGTCGAGTTGGCGGACGCACGTCCCCTGTC
GGAAGCTTTGGGGCGGCAAGTCCGCCGTGGGATGCTAGCCAGTCTCCTCC
TCCGGGCCCTTCCCCTCCTAATATCCCCACATCTTCGATGTCGCCCGGTG
GGATGCCTTACACGGGCGCCATGACAGTGGGTAGTAGTAGCAGTAGTAAA
CCATTTAGCGCACAAGGCGTTGACAAGAGAAGGGACCTTGGGGATATACG
GACGTTGGCAGGGATTGGAGGGGCCGTGCCTTGCGATCCCCCGTCGCACT
TAATGGAGAAATAGCACCAGCTCAACTTTCGGATAGGCAAATCGTCCTCG
AGGTTGAAAAACAGGACCCGGGCCGCGGCCGCGGCTGCGGCGGCCGTCCC
AGGTGGCACGCCCTCGAGGTCGCAGGCAATAACCACTGCCAGTCGAGTTG
GCGGACGCACGTCCCCTGTCGGAAGCTTTGGGGCGGCAAGTCCGCCGTGG
GATGCTAGCCAGTCTCCTCCTCCGGGCCCTTCCCCTCCTAATATCCCCAC
ATCTTCGATGTCGCCCGGTGGGATGCCTTACACGGGCGCCATGACAGTGG
GTAGTAGTAGCAGTAGTAAACCATTTAGCGCACAAGGCGTTGACAAGAGA
AGGGACCTTGGGGATATACGGACGTTGGCAGGGATTGGAGGGGCCGTGCC
TTGCGATCCCCCGTCGCACTTAATGGAGAAATAG
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