mRNA_H-elongata_contig130418.2209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130418.2209.1
Unique NamemRNA_H-elongata_contig130418.2209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130418.2209.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.540e-20
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   58 LFHSFAKLRDEEASQKAELKSRCVVCGISRNEFDRGGNVFFDHTTNDHCM 207
            +  SFA+LRDEEA+ K ELKSRCVVCGISRNEFDRGGNVF+DH T+DHCM
Sbjct: 4219 ILDSFAQLRDEEAALKDELKSRCVVCGISRNEFDRGGNVFYDHVTHDHCM 4268
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BLAST of mRNA_H-elongata_contig130418.2209.1 vs. uniprot
Match: A0A6H5L609_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L609_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   58 LFHSFAKLRDEEASQKAELKSRCVVCGISRNEFDRGGNVFFDHTTNDHCM 207
            +  SFA+LRDEEA+   ELKSRCVVCGISRNEFDRGGNVF+DH T+DHCM
Sbjct: 1168 ILDSFAQLRDEEAALTDELKSRCVVCGISRNEFDRGGNVFYDHVTHDHCM 1217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130418.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMW8_ECTSI5.540e-2080.00Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
A0A6H5L609_9PHAE3.560e-1978.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130418contigH-elongata_contig130418:1041..1250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7FMW8
Preferred nameRYR1
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
EggNOG free text desc.inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
EggNOG OGsKOG3533@1,KOG3533@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.099214-CDS-H-elongata_contig130418:1040..12501622929775.099214-CDS-H-elongata_contig130418:1040..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130418 1041..1250 +
1691679152.9693267-CDS-H-elongata_contig130418:1040..12501691679152.9693267-CDS-H-elongata_contig130418:1040..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130418 1041..1250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130418.2209.1prot_H-elongata_contig130418.2209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130418 1041..1250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130418.2209.1

>prot_H-elongata_contig130418.2209.1 ID=prot_H-elongata_contig130418.2209.1|Name=mRNA_H-elongata_contig130418.2209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
DLNELWVFFKKKRKKLLNSLFHSFAKLRDEEASQKAELKSRCVVCGISRN
EFDRGGNVFFDHTTNDHCM*
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mRNA from alignment at H-elongata_contig130418:1041..1250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130418.2209.1 ID=mRNA_H-elongata_contig130418.2209.1|Name=mRNA_H-elongata_contig130418.2209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig130418:1041..1250+ (Himanthalia elongata Himel1 dioecious)
GATTTGAATGAGTTGTGGGTATTTTTTAAAAAAAAAAGAAAAAAACTTCT
CAATTCGTTGTTCCACAGTTTCGCGAAGCTTCGAGACGAAGAAGCTTCTC
AGAAGGCGGAGCTAAAGAGCCGCTGCGTGGTCTGCGGGATCTCGAGGAAT
GAGTTCGACCGGGGAGGCAACGTGTTCTTCGATCACACCACTAACGATCA
CTGCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig130418:1041..1250+

>mRNA_H-elongata_contig130418.2209.1 ID=mRNA_H-elongata_contig130418.2209.1|Name=mRNA_H-elongata_contig130418.2209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig130418:1041..1250+ (Himanthalia elongata Himel1 dioecious)
GATTTGAATGAGTTGTGGGTATTTTTTAAAAAAAAAAGAAAAAAACTTCT
CAATTCGTTGTTCCACAGTTTCGCGAAGCTTCGAGACGAAGAAGCTTCTC
AGAAGGCGGAGCTAAAGAGCCGCTGCGTGGTCTGCGGGATCTCGAGGAAT
GAGTTCGACCGGGGAGGCAACGTGTTCTTCGATCACACCACTAACGATCA
CTGCATGTGAGATTTGAATGAGTTGTGGGTATTTTTTAAAAAAAAAAGAA
AAAAACTTCTCAATTCGTTGTTCCACAGTTTCGCGAAGCTTCGAGACGAA
GAAGCTTCTCAGAAGGCGGAGCTAAAGAGCCGCTGCGTGGTCTGCGGGAT
CTCGAGGAATGAGTTCGACCGGGGAGGCAACGTGTTCTTCGATCACACCA
CTAACGATCACTGCATGTGA
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