mRNA_H-elongata_contig130406.2208.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: D7FPJ6_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ6_ECTSI) HSP 1 Score: 217 bits (552), Expect = 7.180e-67 Identity = 123/246 (50.00%), Postives = 153/246 (62.20%), Query Frame = 1
Query: 1 EYKVIQEGNEVTVFDDEELGIQVMQLLGQRCSVSFPCSSILRHLCLHVKAS*LTGVYAR*I*ASQS*-------------------------------FMVTVVLI*KYMCSFKTSEHP--PF*LRGTNLSSPSLVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
E +V+QEGNE +VFDDEELG+QV++LLG+RC V+FPCSSILR+LCLHVK + V + Q F + ++ + T+ P TN+ P L TL+K+FSFEVEIVD+TK+YRYID+SN RS ADIG DRA LPL+L GWQ VNIDLE VR VFG+SYLT SQ+T+RASAR+AK+FFQS+ FSDYELP HLRV+
Sbjct: 63 ECEVLQEGNEASVFDDEELGVQVVELLGRRCGVAFPCSSILRYLCLHVKVTQFLRVIHSIVSGKQKDGCCRARETTCATAARVPRFHFFDQHQRISVRFCSELACCNVWLQTLVTTRRRFVPNTSSSTNMRLPKPRLRPDFLQTLDKFFSFEVEIVDDTKRYRYIDISNTRSVADIGDDRALLPLKLEDGWQRVNIDLERTVRLVFGSSYLTTSQVTVRASARVAKLFFQSQPFSDYELPSHLRVV 308
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A7S1TVV2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVV2_9STRA) HSP 1 Score: 100 bits (249), Expect = 6.880e-23 Identity = 65/205 (31.71%), Postives = 92/205 (44.88%), Query Frame = 1
Query: 25 NEVTVFDDEELGIQVMQLLGQRCSVSFPCSSILRHLCLHVKAS*LTGVYAR*I*ASQS*FMVTVVLI*KYMCSFKTSEHPPF*LRGTNLSSPSLVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
NE V +DEELG +V++L+G + P SSIL L LHVK S S F F+ C ++ VDNTK+YR +SN +S + A LPL + GWQ + ++E++ + FG+ YLT Q+ +R S ++K FFQ +SD ELP HLRV+
Sbjct: 44 NEAEVVEDEELGKEVIELMGLEAELVLPTSSILPMLVLHVK--------------STSHF------------------------------------FWIC-----------IDFVDNTKKYRTFTISNKQSIVSVDETEAKLPLIIDEGWQRLCFNVEELTAKAFGSKYLTTYQVRVRGSVCVSKAFFQGHDYSDAELPSHLRVL 187
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A6G1S9M0_9ACAR (UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S9M0_9ACAR) HSP 1 Score: 90.5 bits (223), Expect = 5.660e-19 Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRV 636
L+++F+FE+EI+D+TK R SN ++ + +PL+L GW H+N++L D RR +GT+Y+ S+IT+ A+ R+ +++F Q++D ELP ++
Sbjct: 82 LDRFFTFEIEIIDDTKAKRRFRASNYQTRTRVKDFICTMPLKLESGWNHINLNLADFTRRAYGTNYVETSRITVNANCRLRRIYFADRQYTDEELPAEFKL 182
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A1V9YI48_9STRA (DUF667 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI48_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 6.610e-19 Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVID 642
L+ +F+FE+E++D K+YR + ++NARS A + +PL GWQ+ +DL+ +V FGT ++ Q+ L AS R+ +VFFQ ++S ELP L ++D
Sbjct: 101 LDAFFTFEIEVLDEKKEYRTLTITNARSLARVNASHVQMPLAFGKGWQYFYVDLQSVVHDAFGTQHVATVQLRLMASCRLLRVFFQDVKYSYAELPLDLAILD 203
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A5D6Y0V0_9STRA (DUF667 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.720e-17 Identity = 43/115 (37.39%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 304 LVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRG---GWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
LVLF +L+++F+F++E++D+ +QYR + V+NARS A + LPL G GW+++ +DL+ + + FGT ++T + + + + R+ +VFFQ E +SD ELP HL +
Sbjct: 118 LVLFVK---SLDQFFAFQLEVLDDKQQYRTLKVTNARSLARVEGASVQLPLAFGGPGGGWRYLCMDLQQLTAQAFGTQHVTTTHVRIGGNCRLLRVFFQDELYSDAELPAHLTFL 229
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: W4G477_9STRA (DUF667 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G477_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 9.040e-17 Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 304 LVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLEL-RGG-WQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVID 642
LVLF L+ YF+ ++E+VD+TK YR ++N+RS A + +PL +GG W+HV +D+ M FGT ++ Q+T+ A+ R+ +VFFQ +SD ELP L ++D
Sbjct: 86 LVLFVK---NLDAYFALDIEVVDDTKTYRTFHITNSRSLARVQASACQMPLVFGKGGTWRHVCLDVHRMCLDAFGTHHVATVQVTVHATCRLLRVFFQDVDYSDAELPPMLALLD 197
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A7R9PRD5_TIMGE (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9PRD5_TIMGE) HSP 1 Score: 84.3 bits (207), Expect = 2.850e-16 Identity = 37/120 (30.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 277 RGTNLSSPSLVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRV 636
+ ++ P LV+ L+KYF+F+V+++D+ R + SN RST ++ D +PL L GW V ++L+D+++R +G+SY+ +++ + A+ R+ +V+F + D ++P LR+
Sbjct: 92 KSLAITLPYLVILLK---NLKKYFTFQVDVLDDAGATRKLRASNFRSTVEVTPDLCHMPLRLELGWNQVTLNLDDLMKRAYGSSYVETTRLQINANCRLRRVYFMDRLYRDEDVPADLRL 208
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A7R9DSI4_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9DSI4_TIMCR) HSP 1 Score: 82.8 bits (203), Expect = 2.930e-16 Identity = 34/101 (33.66%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRV 636
L+KYF+F+V+I+D+ + R + SN RST ++ D +PL L GW V ++L+D++RR +G+SY+ ++ + A+ R+ +V+F + + ++P R+
Sbjct: 39 LKKYFTFQVDILDDVGEIRKMRASNFRSTVEVTPDLCHMPLRLEVGWNQVTLNLDDLMRRAYGSSYVETIRLQINANCRLRRVYFMDRLYREEDVPADFRL 139
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A8D3B209_SCOMX (DUF667 domain-containing protein n=6 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B209_SCOMX) HSP 1 Score: 82.8 bits (203), Expect = 5.360e-16 Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
L+KYF+FEV+++D+ R SN +ST + +P+ L GW H+ +L D RR +GT+Y+ ++ + A+ RI +VFF +S+ ELP ++I
Sbjct: 83 LKKYFTFEVQVLDDKNVRRRFQASNYQSTTRVSPFMCTIPMRLDEGWSHIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVFFSDRLYSEDELPAGFKLI 184
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A8D3C337_SCOMX (DUF667 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3C337_SCOMX) HSP 1 Score: 82.8 bits (203), Expect = 7.070e-16 Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
L+KYF+FEV+++D+ R SN +ST + +P+ L GW H+ +L D RR +GT+Y+ ++ + A+ RI +VFF +S+ ELP ++I
Sbjct: 83 LKKYFTFEVQVLDDKNVRRRFQASNYQSTTRVSPFMCTIPMRLDEGWSHIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVFFSDRLYSEDELPAGFKLI 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130406.2208.1 >prot_H-elongata_contig130406.2208.1 ID=prot_H-elongata_contig130406.2208.1|Name=mRNA_H-elongata_contig130406.2208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp MVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVIDK*back to top mRNA from alignment at H-elongata_contig130406:78..1180+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130406.2208.1 ID=mRNA_H-elongata_contig130406.2208.1|Name=mRNA_H-elongata_contig130406.2208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-elongata_contig130406:78..1180+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130406:78..1180+ >mRNA_H-elongata_contig130406.2208.1 ID=mRNA_H-elongata_contig130406.2208.1|Name=mRNA_H-elongata_contig130406.2208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig130406:78..1180+ (Himanthalia elongata Himel1 dioecious)back to top |