mRNA_H-elongata_contig130284.2203.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130284.2203.1
Unique NamemRNA_H-elongata_contig130284.2203.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A6H5KUD2_9PHAE (Aconitate hydratase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD2_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.970e-44
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            +AT+RS IASAANSFK++L ADEGAPYDEVIEIDLD LRPHVNGPFTPDLAHPVG +F+ AVK NDWPD+LSA LIGSCTNSSYEDMARC  L
Sbjct:  305 EATERSGIASAANSFKEHLRADEGAPYDEVIEIDLDTLRPHVNGPFTPDLAHPVGAEFSAAVKENDWPDDLSAALIGSCTNSSYEDMARCADL 397
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A7S1XGE9_9RHOD (Aconitate hydratase, mitochondrial n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XGE9_9RHOD)

HSP 1 Score: 132 bits (333), Expect = 4.800e-34
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            +AT+R+NIAS A++FK+NL ADE A YD++IEIDL  L PH+NGPFTPDLAHP+ + FA AV+ N WP+EL+ GLIGSCTNSSYEDM+R  S+
Sbjct:  285 RATQRANIASLADTFKENLIADENAVYDQIIEIDLSTLEPHINGPFTPDLAHPLSE-FATAVRENGWPEELTVGLIGSCTNSSYEDMSRAASV 376
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A388K8B0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K8B0_CHABU)

HSP 1 Score: 132 bits (332), Expect = 6.370e-34
Identity = 63/92 (68.48%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    4 ATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            ATKR +IA  A SF++NL AD GA YD+VIEI+L +L PHVNGPFTPDLAHP+ + FA+AV+ N+WP+E+SAGLIGSCTNSSYEDM+R  S+
Sbjct:  330 ATKRESIAKLAESFQENLSADPGAKYDKVIEINLSELEPHVNGPFTPDLAHPLSK-FADAVRANNWPEEVSAGLIGSCTNSSYEDMSRAASI 420
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A261XUW9_9FUNG (Aconitate hydratase, mitochondrial n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUW9_9FUNG)

HSP 1 Score: 132 bits (332), Expect = 6.770e-34
Identity = 66/93 (70.97%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            +ATKR+NIA  A SFK NL  DEGA YDEVIEIDL++L PH+NGPFTPDLA P+ + FA AVK N+WP EL   LIGSCTNSSYEDMAR  SL
Sbjct:  314 RATKRANIAKYAESFKHNLVKDEGAEYDEVIEIDLNKLEPHINGPFTPDLATPISK-FAEAVKENNWPQELKVALIGSCTNSSYEDMARSASL 405
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A836CC46_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC46_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.780e-34
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    4 ATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            AT R  +A+AA  F  NL ADEGAPYDE++EI+L +L+PH+NGPFTPDLAH  G + A AV+ N WP E+SAGLIGSCTNSSYEDMARC  L
Sbjct:  315 ATTRGGLAAAAEGFAANLRADEGAPYDELVEINLSELKPHLNGPFTPDLAHTAGAEMAAAVEKNGWPREVSAGLIGSCTNSSYEDMARCADL 406
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: K3W6K0_GLOUD (Aconitate hydratase, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6K0_GLOUD)

HSP 1 Score: 132 bits (331), Expect = 9.270e-34
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            +AT RS IASAA+SFK NL ADEGA YD++IEI+LD+L+P VNGPFTPDLA+  G+Q   A + N WP ELSAGLIGSCTNSSYEDM RC  L
Sbjct:  313 KATTRSGIASAADSFKANLRADEGAQYDQIIEINLDELKPLVNGPFTPDLANEAGEQLKAASEKNGWPTELSAGLIGSCTNSSYEDMTRCAEL 405
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A7S2V7X3_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7X3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.260e-33
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            +ATKR  +A+AA+ FKDNL ADEGA YD+VIE++LD L+P +NGPFTPD AH  G   + +VK N WP+E+SAGLIGSCTNSSYEDM RC  L
Sbjct:  311 KATKREKLAAAADGFKDNLKADEGAQYDQVIEVNLDSLKPMLNGPFTPDWAHEAGAGISASVKENSWPEEMSAGLIGSCTNSSYEDMTRCADL 403
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A024GCK2_9STRA (Aconitate hydratase, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=A0A024GCK2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.720e-33
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    7 TKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            T RS IASAA+SF +NL AD+GA YD++IE+DL QL+P VNGPFTPDLAH  G++   A +TNDWP +LSAGLIGSCTNSSYED++RC  L
Sbjct:  313 TDRSGIASAADSFAENLQADKGAHYDQIIEVDLTQLKPLVNGPFTPDLAHHAGKELKEASETNDWPVKLSAGLIGSCTNSSYEDLSRCAEL 403
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BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A7R9Y577_9VIRI (Aconitate hydratase, mitochondrial n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y577_9VIRI)

HSP 1 Score: 131 bits (329), Expect = 1.750e-33
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    4 ATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            AT+R  IAS A+SF+++L ADEGA YD++IEI+L +L PH+NGPFTPDLAHP+ + FA AVK N WP++L+AGLIGSCTNSSYEDMAR +SL
Sbjct:  329 ATERPGIASLADSFRESLRADEGAEYDQLIEINLSELEPHINGPFTPDLAHPLSE-FAAAVKANGWPEKLTAGLIGSCTNSSYEDMARSVSL 419
[Close]
BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Match: A0A7S0BL93_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL93_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 2.140e-33
Identity = 59/93 (63.44%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDLAHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSL 279
            +AT+R ++A+ A++FK+NL ADE A YD++IEI+L +L PH+NGPFTPDLAHP+ + FA AVK N+WP+EL+ GLIGSCTNSSYEDM R  S+
Sbjct:  252 KATERESLANVADTFKENLKADENAVYDQIIEINLSELEPHINGPFTPDLAHPLSE-FAEAVKKNEWPEELTVGLIGSCTNSSYEDMTRAASI 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130284.2203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUD2_9PHAE4.970e-4482.80Aconitate hydratase, mitochondrial n=2 Tax=Ectocar... [more]
A0A7S1XGE9_9RHOD4.800e-3466.67Aconitate hydratase, mitochondrial n=2 Tax=Compsop... [more]
A0A388K8B0_CHABU6.370e-3468.48Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A261XUW9_9FUNG6.770e-3470.97Aconitate hydratase, mitochondrial n=1 Tax=Bifigur... [more]
A0A836CC46_9STRA6.780e-3467.39Aconitate hydratase, mitochondrial n=1 Tax=Tribone... [more]
K3W6K0_GLOUD9.270e-3469.89Aconitate hydratase, mitochondrial n=2 Tax=Pythiac... [more]
A0A7S2V7X3_9STRA1.260e-3365.59Aconitate hydratase, mitochondrial n=1 Tax=Fibroca... [more]
A0A024GCK2_9STRA1.720e-3368.13Aconitate hydratase, mitochondrial n=2 Tax=Albugo ... [more]
A0A7R9Y577_9VIRI1.750e-3368.48Aconitate hydratase, mitochondrial n=1 Tax=Prasino... [more]
A0A7S0BL93_9RHOD2.140e-3363.44Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130284contigH-elongata_contig130284:303..1292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.5e-35
Seed eggNOG ortholog2880.D7FQN5
Preferred nameACO2
KEGG rclassRC00497,RC00498,RC00618
KEGG koko:K01681
KEGG ReactionR01324,R01325,R01900
KEGG Pathwayko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00173,M00740
GOsGO:0000002,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006520,GO:0006536,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009064,GO:0009295,GO:0009605,GO:0009607,GO:0009987,GO:0015980,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031012,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0032502,GO:0035821,GO:0035900,GO:0042645,GO:0043167,GO:0043169,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044003,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044416,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055114,GO:0061008,GO:0062039,GO:0062040,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0075136,GO:0080134,GO:0097159,GO:1901363,GO:1901564,GO:1901605
EggNOG free text desc.homoaconitate hydratase activity
EggNOG OGsCOG1048@1,KOG0453@2759
EC4.2.1.3
COG Functional cat.C
BiGG ReactioniMM904.YLR304C,iND750.YLR304C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.508239-CDS-H-elongata_contig130284:302..4911622929774.508239-CDS-H-elongata_contig130284:302..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130284 303..491 +
1691679152.7338045-CDS-H-elongata_contig130284:302..4911691679152.7338045-CDS-H-elongata_contig130284:302..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130284 303..491 +
1622929774.5194354-CDS-H-elongata_contig130284:1199..12921622929774.5194354-CDS-H-elongata_contig130284:1199..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130284 1200..1292 +
1691679152.7484198-CDS-H-elongata_contig130284:1199..12921691679152.7484198-CDS-H-elongata_contig130284:1199..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130284 1200..1292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130284.2203.1prot_H-elongata_contig130284.2203.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130284 303..1292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130284.2203.1

>prot_H-elongata_contig130284.2203.1 ID=prot_H-elongata_contig130284.2203.1|Name=mRNA_H-elongata_contig130284.2203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
QATKRSNIASAANSFKDNLCADEGAPYDEVIEIDLDQLRPHVNGPFTPDL
AHPVGQQFANAVKTNDWPDELSAGLIGSCTNSSYEDMARCLSLS
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mRNA from alignment at H-elongata_contig130284:303..1292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130284.2203.1 ID=mRNA_H-elongata_contig130284.2203.1|Name=mRNA_H-elongata_contig130284.2203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at H-elongata_contig130284:303..1292+ (Himanthalia elongata Himel1 dioecious)
CAGGCGACCAAAAGGTCCAACATCGCCTCGGCGGCTAACTCCTTCAAGGA
CAACCTCTGCGCCGACGAGGGGGCCCCCTACGACGAGGTCATCGAGATTG
ATCTCGACCAGCTGCGCCCCCATGTGAACGGTCCCTTTACGCCAGATCTC
GCCCACCCCGTGGGTCAGCAGTTCGCGAACGCGGTCAAGGTGGGTTTTGA
TTTTTATGTGAAGGGAAGTTTAGGGGGGGGAAGGGGAGGGGCGAGGTGGG
AGATCGGCAGAAATGAACGATACCTTTTGCGAGGATTGCGCAACCTACCT
GCGTTTTGCCGACTTCGCATCTGTGGACGGATATTTTCGGATCTTGAGTT
CTATTGATAGCTTGTTTTTCCTGGAGGATAAGATGAACGCTAGAGACGAT
AGAGACGATCGATTGGTGCCATCGTTCTCTGGTTGAGAGGAGAGGTTTCC
GCTCATTTCCGCTGATTTCCACTGGGGCAGCGTTTGGTGAGAGTGCAGAG
GTTCTAGGCTGCAACAAATATATTTGGTGATGGTTCATTATGGCTGCAAG
AAACATTTATGGAAATAGCCTAGTTTTTCAGTTCAGCCATCCGCGGAGAA
TTCTTGTAAACTATGCACCTCGTCGATCGCGTATCATGGATCACATATCA
CGAATCGTGTCCTACGTATGGCGGTGTCTTGCCGGCAAGTATCACGGCCC
AATAACACACATTGTTCTCATGCGGTTCGTATTATATCCTCGTATCGACC
ATCCCAACCACCGATTGCCGTCTTGTGTCCTGATCCGGTGTCTGCACTCT
GTTTAATTTAACTTTTTTATTTCTCAAGTTTCGATTTTGACTCTTGTAAC
CTCAATTTTAATTTATCATGTATTTCACTAATATTTTTGATGGGCAGACC
AACGACTGGCCGGACGAGCTCTCCGCGGGACTGATCGGGTCCTGCACCAA
CTCGTCCTACGAGGACATGGCCAGGTGCCTCTCCCTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig130284:303..1292+

>mRNA_H-elongata_contig130284.2203.1 ID=mRNA_H-elongata_contig130284.2203.1|Name=mRNA_H-elongata_contig130284.2203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig130284:303..1292+ (Himanthalia elongata Himel1 dioecious)
CAGGCGACCAAAAGGTCCAACATCGCCTCGGCGGCTAACTCCTTCAAGGA
CAACCTCTGCGCCGACGAGGGGGCCCCCTACGACGAGGTCATCGAGATTG
ATCTCGACCAGCTGCGCCCCCATGTGAACGGTCCCTTTACGCCAGATCTC
GCCCACCCCGTGGGTCAGCAGTTCGCGAACGCGGTCAAGCAGGCGACCAA
AAGGTCCAACATCGCCTCGGCGGCTAACTCCTTCAAGGACAACCTCTGCG
CCGACGAGGGGGCCCCCTACGACGAGGTCATCGAGATTGATCTCGACCAG
CTGCGCCCCCATGTGAACGGTCCCTTTACGCCAGATCTCGCCCACCCCGT
GGGTCAGCAGTTCGCGAACGCGGTCAAGACCAACGACTGGCCGGACGAGC
TCTCCGCGGGACTGATCGGGTCCTGCACCAACTCGTCCTACGAGGACATG
GCCAGGTGCCTCTCCCTCTCCACCAACGACTGGCCGGACGAGCTCTCCGC
GGGACTGATCGGGTCCTGCACCAACTCGTCCTACGAGGACATGGCCAGGT
GCCTCTCCCTCTCC
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