mRNA_H-elongata_contig130183.2201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130183.2201.1
Unique NamemRNA_H-elongata_contig130183.2201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130183.2201.1 vs. uniprot
Match: H3AI42_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AI42_LATCH)

HSP 1 Score: 50.4 bits (119), Expect = 4.060e-5
Identity = 32/103 (31.07%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   10 RDGHSEITASGYRVYFSGDCTGVKGKKRQHGVGLAIKKEIVNKASKDDIAIECINARLLKARVSFKSN-FVTFVVAYAPTEEATEGEKANYIAALNSTVSSVP 315
            R+G  +    GY  ++ G        K+ HGVG AIK E++N+ ++  I I   N RL+  R++   N + T +  YAPT +A +  K  + + L+  +S +P
Sbjct:    9 REGQLKEQGGGYTFFWKG--------KQLHGVGFAIKNELINQLNEFPIGI---NERLMTLRLNLVGNRYATIISVYAPTLDADDEIKEEFYSNLDQVLSGIP 100
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BLAST of mRNA_H-elongata_contig130183.2201.1 vs. uniprot
Match: A0A2B4R8K0_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R8K0_STYPI)

HSP 1 Score: 50.1 bits (118), Expect = 5.260e-5
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    1 ETKRDGHSEIT--ASGYRVYFSGDCTGVKGKKRQHGVGLAIKKEIVNKASKDDIAIECINARLLKARVSFKSNF-VTFVVAYAPTEEATEGEKANYIAALNSTVSSVP 315
            ET+R G  ++T   +GY  ++ G     + ++R HGVG A+KKE++    +  + +   + RL+  R+  KSN   T + AYAPT +    +K  + + L+S ++  P
Sbjct:   72 ETRRAGEGQLTERGAGYTFFWMGK---EENEQRIHGVGFALKKELIRNLEELPVGV---SERLMTLRLKLKSNQQATVISAYAPTLQVEPEDKEIFYSTLDSVLTQTP 173
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BLAST of mRNA_H-elongata_contig130183.2201.1 vs. uniprot
Match: UPI001F145BBF (uncharacterized protein LOC124530903 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F145BBF)

HSP 1 Score: 50.1 bits (118), Expect = 8.900e-5
Identity = 31/104 (29.81%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    1 ETKRDGHSEITASGYRVYFSGDCTGVKGKKRQHGVGLAIKKEIVNKASKDDIAIEC---INARLLKARVSFKSNFVTFVVAYAPTEEATEGEKANYIAALNSTV 303
            ET+ +    +  + Y  Y+ G  +    + R+HGVG A++ +++N       AIE    ++ R++  R++ KS FVT + AYAPT  +    K  +   L  TV
Sbjct:   40 ETRTEDEGSLRGANYTFYWKGKSSS---ETREHGVGFAVRNQLIN-------AIETPVGVSERIMFLRLNTKSGFVTLISAYAPTLNSKPETKDQFYDQLEETV 133
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BLAST of mRNA_H-elongata_contig130183.2201.1 vs. uniprot
Match: UPI001F13174D (uncharacterized protein LOC124542512 n=7 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F13174D)

HSP 1 Score: 50.1 bits (118), Expect = 8.920e-5
Identity = 31/104 (29.81%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    1 ETKRDGHSEITASGYRVYFSGDCTGVKGKKRQHGVGLAIKKEIVNKASKDDIAIEC---INARLLKARVSFKSNFVTFVVAYAPTEEATEGEKANYIAALNSTV 303
            ET+ +    +  + Y  Y+ G  +    + R+HGVG A++ +++N       AIE    ++ R++  R++ KS FVT + AYAPT  +    K  +   L  TV
Sbjct:   40 ETRTEDEGSLRGANYTFYWKGKSSS---ETREHGVGFAVRNQLIN-------AIETPVGVSERIMFLRLNTKSGFVTLISAYAPTLNSKPETKDQFYDQLEETV 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130183.2201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
H3AI42_LATCH4.060e-531.07Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
A0A2B4R8K0_STYPI5.260e-530.56Uncharacterized protein n=1 Tax=Stylophora pistill... [more]
UPI001F145BBF8.900e-529.81uncharacterized protein LOC124530903 n=1 Tax=Vanes... [more]
UPI001F13174D8.920e-529.81uncharacterized protein LOC124542512 n=7 Tax=Vanes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130183contigH-elongata_contig130183:374..688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.1390586-CDS-H-elongata_contig130183:373..6881622929774.1390586-CDS-H-elongata_contig130183:373..688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130183 374..688 +
1691679152.5931714-CDS-H-elongata_contig130183:373..6881691679152.5931714-CDS-H-elongata_contig130183:373..688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130183 374..688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130183.2201.1prot_H-elongata_contig130183.2201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130183 374..688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130183.2201.1

>prot_H-elongata_contig130183.2201.1 ID=prot_H-elongata_contig130183.2201.1|Name=mRNA_H-elongata_contig130183.2201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
ETKRDGHSEITASGYRVYFSGDCTGVKGKKRQHGVGLAIKKEIVNKASKD
DIAIECINARLLKARVSFKSNFVTFVVAYAPTEEATEGEKANYIAALNST
VSSVP
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mRNA from alignment at H-elongata_contig130183:374..688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130183.2201.1 ID=mRNA_H-elongata_contig130183.2201.1|Name=mRNA_H-elongata_contig130183.2201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig130183:374..688+ (Himanthalia elongata Himel1 dioecious)
GAGACAAAACGGGACGGACATTCTGAAATAACTGCATCTGGATACCGGGT
CTATTTTAGTGGTGATTGCACCGGAGTCAAAGGGAAGAAGCGGCAACATG
GGGTGGGACTAGCGATAAAGAAGGAGATCGTTAATAAGGCCAGCAAGGAC
GACATCGCAATCGAGTGCATCAACGCACGTCTCCTGAAGGCTCGAGTATC
GTTTAAATCTAACTTTGTTACGTTTGTGGTAGCCTACGCTCCGACCGAGG
AAGCGACGGAGGGGGAGAAGGCCAATTATATCGCAGCCCTCAACAGCACC
GTATCATCAGTGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig130183:374..688+

>mRNA_H-elongata_contig130183.2201.1 ID=mRNA_H-elongata_contig130183.2201.1|Name=mRNA_H-elongata_contig130183.2201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig130183:374..688+ (Himanthalia elongata Himel1 dioecious)
GAGACAAAACGGGACGGACATTCTGAAATAACTGCATCTGGATACCGGGT
CTATTTTAGTGGTGATTGCACCGGAGTCAAAGGGAAGAAGCGGCAACATG
GGGTGGGACTAGCGATAAAGAAGGAGATCGTTAATAAGGCCAGCAAGGAC
GACATCGCAATCGAGTGCATCAACGCACGTCTCCTGAAGGCTCGAGTATC
GTTTAAATCTAACTTTGTTACGTTTGTGGTAGCCTACGCTCCGACCGAGG
AAGCGACGGAGGGGGAGAAGGCCAATTATATCGCAGCCCTCAACAGCACC
GTATCATCAGTGCCCGAGACAAAACGGGACGGACATTCTGAAATAACTGC
ATCTGGATACCGGGTCTATTTTAGTGGTGATTGCACCGGAGTCAAAGGGA
AGAAGCGGCAACATGGGGTGGGACTAGCGATAAAGAAGGAGATCGTTAAT
AAGGCCAGCAAGGACGACATCGCAATCGAGTGCATCAACGCACGTCTCCT
GAAGGCTCGAGTATCGTTTAAATCTAACTTTGTTACGTTTGTGGTAGCCT
ACGCTCCGACCGAGGAAGCGACGGAGGGGGAGAAGGCCAATTATATCGCA
GCCCTCAACAGCACCGTATCATCAGTGCCC
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