mRNA_H-elongata_contig130146.2198.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 232 bits (591), Expect = 1.500e-72 Identity = 106/164 (64.63%), Postives = 132/164 (80.49%), Query Frame = 1
Query: 4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
+YI PML + TFS R RM+YDDF VLV +LRPAL++NEK G LRNGA+PVEY+VA+TLRWLA GSIYE MDGHVIARSTAY +T VI A+NACP+++CKW E E++ + V+RKCVGAMDGLF+R+IKP+++E AEP ++Y+GHKKGFGMNFQ
Sbjct: 59 TYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 222
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 215 bits (547), Expect = 1.080e-65 Identity = 98/141 (69.50%), Postives = 122/141 (86.52%), Query Frame = 1
Query: 73 MVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
+VLV +LRPAL+KN++MG LRNGA+PVE +VA+TLRWLA GSIYE MDGHVIARSTAY +T VI A+NACP+++CKW E E+ +RAA LFR RSS V+RKCVGA DGLF+R+IKP+++E AEP ++Y+GHKKGFGMNFQ
Sbjct: 71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 211
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 203 bits (516), Expect = 5.470e-62 Identity = 95/158 (60.13%), Postives = 122/158 (77.22%), Query Frame = 1
Query: 4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKG 477
++I P+L + TFS R RM+YDDF VL+ +LRPAL KNEKMG LR GA+PVEY++A+TLRWLA GSIYE MDGHVIARSTAY +T VI A+NACP+++CKW E + V+RKCVGAMDGLF+R+IKP+++E AEP ++Y+GH+KG
Sbjct: 59 THIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE--------------ARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 193 bits (490), Expect = 9.870e-61 Identity = 88/125 (70.40%), Postives = 107/125 (85.60%), Query Frame = 1
Query: 121 MGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
MG LRNGA+PVE +VA+TLRWLA GSIYE MDGHVIARSTAY +T VI A+NACP+++CKW E E+ +RAA LFR RSS V+RKCVGAMD LF+R+IKP+++E AEP ++Y+GHKKGFGMNFQ
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 199 bits (505), Expect = 2.570e-59 Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1
Query: 4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
+Y+ PM+ + TF KR RMDY DFM L LRP L+++EKMG LRNGA+PVE+++A+TLR+LA GS++E MD +VIA+STAY I VI A+N Q++CKW ++ A L+R RS+ GVIR+CVGAMDGLF+RLI P + A P FYSGHKK FGMNFQ
Sbjct: 59 TYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 198 bits (503), Expect = 4.310e-59 Identity = 92/164 (56.10%), Postives = 121/164 (73.78%), Query Frame = 1
Query: 4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
+Y PM+ +GTF R RMDY +F +L LRP L++NE+MG LRNG +PVE+++A+ LR+LA GS++E MDG+VIARSTAY I VI A+N ++DC W E E+ G++R RS+ GVIR CVGAMDGLF+R+ +P+ R P+ FYSGHKKGFGMNFQ
Sbjct: 55 TYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 125 bits (314), Expect = 5.440e-34 Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1
Query: 121 MGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFG 366
MG LRNGA+PVEY+VA+TLRWLA GSIYE MDGHVIARSTAY +T VI A+NACP+++CKW E E+ + AA LFR RSS+G
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSSYG 82
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.140e-33 Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1
Query: 4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKE----VIAAMNACP 288
+YI PML + TFS R RM+YDDF VLV +LRPAL+KNEKMG LRNGA+PVEY+VA+TLRWLA GS YE MDGHVIARSTAY + ++A M CP
Sbjct: 59 TYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMAWMMNCP 157
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE) HSP 1 Score: 133 bits (334), Expect = 5.850e-33 Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 211 MDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
MD HVIARSTAY T VI A+NAC +++CKW E E+ +RAA LFR RSS V+RKCVGAMDG F+R+IKP+++E EP + +GHKKGFG NFQ
Sbjct: 1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEGEDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQ 95
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 115 bits (287), Expect = 1.020e-27 Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 193 GSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
GSI+E MDG V A+STAY I VI A+N + DC W E ++ G++R RS+ VI CVGAMDGLF+ + +P+ R P+ FYSGHKKGFGMNFQ
Sbjct: 52 GSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQ 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130146.2198.1 >prot_H-elongata_contig130146.2198.1 ID=prot_H-elongata_contig130146.2198.1|Name=mRNA_H-elongata_contig130146.2198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp MLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVAback to top mRNA from alignment at H-elongata_contig130146:600..1094+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130146.2198.1 ID=mRNA_H-elongata_contig130146.2198.1|Name=mRNA_H-elongata_contig130146.2198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig130146:600..1094+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130146:600..1094+ >mRNA_H-elongata_contig130146.2198.1 ID=mRNA_H-elongata_contig130146.2198.1|Name=mRNA_H-elongata_contig130146.2198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig130146:600..1094+ (Himanthalia elongata Himel1 dioecious)back to top |