mRNA_H-elongata_contig13012.2196.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: D7FIW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW1_ECTSI) HSP 1 Score: 216 bits (549), Expect = 5.730e-62 Identity = 123/234 (52.56%), Postives = 147/234 (62.82%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDTEKCLENVEENLRPRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILKGFLSEVDSYFHRETVDTSMIDTLAR-VPAQTFKGTSPASPSPAHCKSSLKRPPCDGGKSRDLAAEEG------SGGG----------------------ADTPGQRALLRLRKKCEVTG*GE 615
IEVGAGCGLTSIY ALRGADVTITDMD KC +NV+ NL PRG+SG A +RRLEW A +LA EPPYD+VIAGDCLYEEACISPLL+TMWAL+GP +E+LL GVVG+ +L FL + YF ETVDTS IDTLA +P + + A +++ + D + AE G +GGG A PGQRAL+RLRKKC+ G GE
Sbjct: 116 IEVGAGCGLTSIYTALRGADVTITDMDPAKCTDNVDMNLDPRGLSGKASVRRLEWDCAAELALFEPPYDIVIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFLGQARQYFELETVDTSKIDTLAEELPLGNQSDAAAVEAALARARATAEPTGLDPDAAARSVAERGPEEERKAGGGVGGPQVKAALGGEGVESELAAVAQLPGQRALMRLRKKCDA-GAGE 348
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A6H5L0W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W2_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.100e-49 Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDTEKCLENVEENLRPRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILKGFL 345
IEVGAGCGLTSIY ALRGA+VTITDMD KC +NV+ NL PRG+SG A +RRLEW A +LA EPPYD++IAGDCLYEEACISPLL+TMWAL+GP +E+LL GVVG+ +L FL
Sbjct: 111 IEVGAGCGLTSIYTALRGANVTITDMDPAKCADNVDMNLDPRGLSGKASVRRLEWDCAAELAMFEPPYDVIIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFL 225
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A836C9A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A2_9STRA) HSP 1 Score: 115 bits (289), Expect = 7.450e-27 Identity = 69/173 (39.88%), Postives = 94/173 (54.34%), Query Frame = 1
Query: 76 MDTEKCLENVEENLRPRGMS-GHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILKGFLSEVDSYFHRETVDTSMIDTLARVPAQTFKGTSPASPSPAHCKSSLKRPPCDGGKSRDLAAEEGSGGGADTPGQRALLRLRKK 591
MDTEKC +++E N RG+ ++ L W D+ +PP+D+++AGDCLY+EACI PLLQTM +LA + +LLCG VG I+ F +VD YF R VDT IDTL+ ++ KG DG + +A G PGQRALL +RK+
Sbjct: 1 MDTEKCRDSIEANFEHRGLPLDTVQVEELVWGQT-DVTPLQPPFDIILAGDCLYQEACIEPLLQTMHSLASEDTLVLLCGAVGPKIIDSFNEKVDRYFERRVVDTKTIDTLSD-DSEVNKG--------------------DGLRQHTSSAV---GASDPQPGQRALLVMRKR 148
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A2P2JZH2_RHIMU (Uncharacterized protein MANES_04G014600 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JZH2_RHIMU) HSP 1 Score: 86.7 bits (213), Expect = 1.550e-15 Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITD-MDTEKCLE-NVEENLR-------PRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDI 330
IE+GAGCG++ AL G DV TD MD + L NVE N+ G G ++ L+W + + +A C+PP+D +I D +Y E + PLL T+ AL+GPK+ ILL GY+I
Sbjct: 69 IELGAGCGVSGFGMALLGCDVIATDQMDVLRLLSRNVERNISRILQMDTSPGRFGSIQVAELDWGNEDHIAACKPPFDYIIGTDVVYAEHLLEPLLNTILALSGPKTTILL----GYEI 183
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A453Q2U9_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453Q2U9_AEGTS) HSP 1 Score: 82.8 bits (203), Expect = 2.870e-14 Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDT--EKCLENVEENLR-------PRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLC 309
IE+GAGCGL + AL G DV TD + NVE N G G + L+W + E + EPP+D +I D +Y E + PLL+T+ AL+GPK+++L+C
Sbjct: 109 IELGAGCGLAGLGMALLGCDVVTTDQVEVLPLLMRNVERNKSWIAQSNPDSGSFGSVTVAELDWGNKEHIRAVEPPFDYIIGTDVVYSEHLLQPLLETIIALSGPKTKVLVC 220
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: K3YUK5_SETIT (Uncharacterized protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YUK5_SETIT) HSP 1 Score: 83.2 bits (204), Expect = 5.630e-14 Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDT--EKCLENVEENLR-------PRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILKGFLSEV-----DSYFHRETVDTSMID 399
IE+GAGCGL AL G DVT TD + NVE N G G + L+W + E + EPP+D +I D +Y E + PL++T+ AL+GPK++ILL GY+I + E S F +TV S +D
Sbjct: 69 IELGAGCGLAGFGMALLGCDVTTTDQVEVLPLLIRNVERNKSWISQSNSDSGSIGSITVAELDWGNKEHIKAVEPPFDYIIGTDVVYSEHLLQPLMETITALSGPKTKILL----GYEIRSTTVHEKMMEMWKSNFVVKTVSKSKMD 211
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A194YT58_SORBI (Uncharacterized protein n=12 Tax=Andropogoneae TaxID=147429 RepID=A0A194YT58_SORBI) HSP 1 Score: 83.2 bits (204), Expect = 5.710e-14 Identity = 55/154 (35.71%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDT--EKCLENVEENLRPRGMS-------GHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILKGFLSEV-----DSYFHRETVDTSMIDTLARVPA 420
IE+GAGCGL AL G DVT TD + NVE N S G + L+W + E + EPP+D +I D +Y E + PLL+T+ AL+GPK++ILL GY+I + E S F +T+ S +D + P+
Sbjct: 69 IELGAGCGLAGFGMALLGCDVTTTDQVEVLPLLMRNVERNRSWISQSNSDSDSIGSITVAELDWGNKEHIKAVEPPFDYIIGTDVVYSEHLLQPLLETITALSGPKTKILL----GYEIRSTIVHEKMMEMWKSNFIVKTISKSKMDVKYQHPS 218
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A5J9UXC6_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UXC6_9POAL) HSP 1 Score: 83.2 bits (204), Expect = 5.710e-14 Identity = 54/168 (32.14%), Postives = 83/168 (49.40%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDT--EKCLENVEENLRPRGMS------GHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILK-------------GFL------SEVDSYFHRETVDTSMIDTLARVPAQ 423
IE+GAGCGL AL G DV TD + NVE N S G ++ L+W + + + EPP+D +I D +Y E + PLL+T+ AL+GPK++ILL GY+I F+ S++D+ +H ++ M+D AR+ ++
Sbjct: 69 IELGAGCGLAGFGMALLGCDVVTTDQVEVLPLLMRNVERNKSWISQSNSDSGLGSIKVAELDWGNQDHIKAVEPPFDYIIGTDVVYSEHLLQPLLETITALSGPKTKILL----GYEIRSTTVHEKMMEMWKSNFIVKTISKSKMDAKYHHPSIQLYMMDPKARLTSE 232
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: A0A2I4EHT7_JUGRE (protein N-lysine methyltransferase METTL21A isoform X2 n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4EHT7_JUGRE) HSP 1 Score: 80.5 bits (197), Expect = 1.320e-13 Identity = 49/141 (34.75%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDT--EKCLENVEEN------LRPRGMS-GHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDILKGFLSEVDSYFHRETVDTSMI 396
+E+GAGCG+ AL G DV TD + NVE N + P S G ++ L+W + + + +PP+D +I D +Y E + PLLQT++AL+GPK+ ILL GY+I + E R D +I
Sbjct: 69 LELGAGCGVAGFGMALLGCDVVATDQIEVLPLLMRNVERNTSRILQMNPGSDSFGSIQVAELDWGNKDHIRAVDPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL----GYEIRSTSVHEQMLQMWRRNFDVKII 205
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Match: M7YCU0_TRIUA (Uncharacterized protein n=19 Tax=Pooideae TaxID=147368 RepID=M7YCU0_TRIUA) HSP 1 Score: 82.0 bits (201), Expect = 1.360e-13 Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 1 IEVGAGCGLTSIYAALRGADVTITDMDT--EKCLENVEENLR-------PRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDCLYEEACISPLLQTMWALAGPKSEILLCGVVGYDI 330
IE+GAGCGL + AL G DV TD + NVE N G G + L+W + E + EPP+D +I D +Y E + PLL+T+ AL+GPK+++LL GY+I
Sbjct: 69 IELGAGCGLAGLGMALLGCDVVTTDQVEVLPLLMRNVERNKSWIAQSNPDSGSFGSVMVAELDWGNKEHIRAVEPPFDYIIGTDVVYSEHLLQPLLETIIALSGPKTKVLL----GYEI 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13012.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13012.2196.1 >prot_H-elongata_contig13012.2196.1 ID=prot_H-elongata_contig13012.2196.1|Name=mRNA_H-elongata_contig13012.2196.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MDTEKCLENVEENLRPRGMSGHARIRRLEWASAEDLAQCEPPYDLVIAGDback to top mRNA from alignment at H-elongata_contig13012:4695..7323+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13012.2196.1 ID=mRNA_H-elongata_contig13012.2196.1|Name=mRNA_H-elongata_contig13012.2196.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2629bp|location=Sequence derived from alignment at H-elongata_contig13012:4695..7323+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13012:4695..7323+ >mRNA_H-elongata_contig13012.2196.1 ID=mRNA_H-elongata_contig13012.2196.1|Name=mRNA_H-elongata_contig13012.2196.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig13012:4695..7323+ (Himanthalia elongata Himel1 dioecious)back to top |