mRNA_H-elongata_contig13006.2193.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: D8LB90_ECTSI (Tafazzin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB90_ECTSI) HSP 1 Score: 192 bits (488), Expect = 2.900e-58 Identity = 86/111 (77.48%), Postives = 102/111 (91.89%), Query Frame = 1
Query: 1 QVECHNQETLVEAVLNRGDKGLLTVSNHMSVYDDPGLWSALIPFWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
+VECHN++ L++AVL+RGD+GLLTVSNHM VYDDPGLWSALIPFW R GR++MRWA+CTDDIY A+P+L+ +F AGRT+PIKRTRGMEQPLF+AFFQKLE GEWGHI AEG
Sbjct: 181 KVECHNRQALLDAVLDRGDRGLLTVSNHMCVYDDPGLWSALIPFW-RTGRRRMRWALCTDDIYYAHPVLKNIFEAGRTLPIKRTRGMEQPLFKAFFQKLEGGEWGHIFAEG 290
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A6H5KEM7_9PHAE (Tafazzin family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM7_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.390e-56 Identity = 85/111 (76.58%), Postives = 101/111 (90.99%), Query Frame = 1
Query: 1 QVECHNQETLVEAVLNRGDKGLLTVSNHMSVYDDPGLWSALIPFWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
+VECHN++ L++AVL+RGD+GLLTVSNHM VYDDPGLWSAL+PFW R GRK+MRWA+CTDDIY A+P+L+ +F AGRT+PIKR RGMEQPLF+AFFQKLE GEWGHI AEG
Sbjct: 190 KVECHNRQELLDAVLDRGDRGLLTVSNHMCVYDDPGLWSALVPFW-RTGRKRMRWALCTDDIYYAHPVLKNIFDAGRTLPIKRNRGMEQPLFKAFFQKLEGGEWGHIFAEG 299
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A7S2UUF3_9STRA (Tafazzin family protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.100e-24 Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 1
Query: 1 QVECHNQETLVEAVLNRGDK-GLLTVSNHMSVYDDPGLWSALIPFWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
+V H +E L++ V NR G+L+VSNHMS+YDDPGLWSA+IP+W R + +R+++C DD+Y + L +F AG+ +P+ R G Q + + + ++EG W HI AEG
Sbjct: 178 KVVTHRKELLMDCVYNREPGVGILSVSNHMSMYDDPGLWSAIIPWW-RMPHRLLRYSLCNDDMYFVSKYLTPIFLAGKALPVSRKAGPNQQFMKDYTEVVDEGNWCHIFAEG 288
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A7J7PEG5_9CHLO (Tafazzin family protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PEG5_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 5.480e-19 Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 16 NQETLVEAVLNRGD-KGLLTVSNHMSVYDDPGLWSALIP---FWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
NQ+T E V NR GLLT+SNH S +DDPGL A++P FW+ + RW +C DI N LL++ F G+T+P++R G+ Q + + L GEW HI EG
Sbjct: 46 NQDTYTELVHNRPHGAGLLTISNHTSTFDDPGLPCAMLPWHFFWTEHNHGRNRWTMCASDICFRNELLRQFFLNGKTLPVERGAGVGQRIMGVAARALARGEWLHIFPEG 155
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: C1E8W0_MICCC (Tafazzin family protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E8W0_MICCC) HSP 1 Score: 88.2 bits (217), Expect = 8.530e-19 Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 10 CHNQETLVEAVLNRG-DKGLLTVSNHMSVYDDPGLWSALIP---FWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
C N ET V R GL+TVSNH S +DDPGL S +IP F S + +RW +CT +I N L+ + F AG+T+PI R G+ Q + +++ G+W HI EG
Sbjct: 57 CTNYETFYHHVTQRRRPNGLITVSNHASTFDDPGLLSWMIPWRYFLSEPTHRGIRWTMCTSEICAKNALVHKFFAAGKTVPITRGGGINQAVMGTMAERVSRGDWLHIFPEG 168
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A383WP59_TETOB (Tafazzin family protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WP59_TETOB) HSP 1 Score: 88.6 bits (218), Expect = 1.260e-18 Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 16 NQETLVEAVLNRGDK-GLLTVSNHMSVYDDPGLWSALIP---FWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
N ET E V NR + GLLT+SNH S +DDPGL A++P FW+ K RW +C DI N + ++ F G+T+P++R G+ Q + + L +GEW HI EG
Sbjct: 46 NHETYKELVHNRPEGVGLLTISNHTSTFDDPGLPCAMLPWHFFWTEHSHCKNRWTMCASDICFTNEVFRQFFLNGKTLPVERGAGVGQRIMGVAARALAQGEWLHIFPEG 155
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A1V9ZBT6_9STRA (Elongation factor 3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBT6_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.370e-18 Identity = 41/108 (37.96%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 16 NQETLVEAVLNR-GDKGLLTVSNHMSVYDDPGLWSALIPFWSRAGRKKMRWAICTDDI-YNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
N+++L + +L R + L+TV+NH S DDP +++ ++P WS + RW +C+ + Y PLL VF A +T+PIKR G++ P+ E F+K++ G+W H+ EG
Sbjct: 1130 NEDSLAKWILARPAHRALITVTNHSSTVDDPAVFARILP-WSCVNPRICRWGLCSQEYCYTKGPLLSAVFYASKTLPIKRGAGLDHPMLEDLFKKVQNGQWVHVFPEG 1236
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A0D2LY10_9CHLO (Tafazzin family protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LY10_9CHLO) HSP 1 Score: 85.1 bits (209), Expect = 2.120e-18 Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 61 GLLTVSNHMSVYDDPGLWSALIP---FWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
GLLT SNH S +DDPGL SAL+P FW+ KMRW +C D+ N ++++ F G+ +P++R G QP+ ++L G+W H+ EG
Sbjct: 70 GLLTYSNHTSTFDDPGLPSALLPWWLFWTEHSHGKMRWTMCARDVCFLNDVMRQFFLNGKALPVERGGGAAQPVIGVAARRLAAGDWLHVFPEG 163
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A8J4DAP2_9CHLO (Tafazzin family protein n=6 Tax=Volvox TaxID=3066 RepID=A0A8J4DAP2_9CHLO) HSP 1 Score: 86.3 bits (212), Expect = 4.690e-18 Identity = 42/116 (36.21%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 1 QVECHNQETLVEAVLNRG-DKGLLTVSNHMSVYDDPGLWSALIP---FWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTR-GMEQPLFEAFFQKLEEGEWGHIVAEG 333
+ E NQ+ L+ A+ NR G+LTV NH S++DDPG+ S ++P FW + +RW++C ++ N LL++ F +G+T+P++R + G+ QP+ L G+W H+ EG
Sbjct: 46 KTEIINQDRLINAIENRQHSSGVLTVCNHTSMFDDPGVLSIIMPWSWFWMDPVQHHVRWSLCAKEVCFKNELLRQFFLSGKTLPVERGKAGVHQPVVSLAAMALASGQWVHVFPEG 161
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Match: A0A2W1BMN9_HELAM (Tafazzin family protein n=4 Tax=Heliothinae TaxID=95178 RepID=A0A2W1BMN9_HELAM) HSP 1 Score: 85.9 bits (211), Expect = 6.190e-18 Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 13 HNQETLVEAVLNRGDKGLLTVSNHMSVYDDPGLWSALIPFWSRAGRKKMRWAICTDDIYNANPLLQRVFRAGRTMPIKRTRGMEQPLFEAFFQKLEEGEWGHIVAEG 333
+N+ETL AV + LLTVSNH S +DDPGLW L S R +MRW++ DI N L F G+ +P+ R G+ QP + ++L GEW HI EG
Sbjct: 47 YNRETLAAAVRRPRGQPLLTVSNHHSCFDDPGLWGVL-DVRSLTSRSRMRWSLAAHDICFTNALHSCFFALGKCVPVVRGAGVHQPAMDFCVERLARGEWVHIFPEG 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13006.2193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13006.2193.1 >prot_H-elongata_contig13006.2193.1 ID=prot_H-elongata_contig13006.2193.1|Name=mRNA_H-elongata_contig13006.2193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp QVECHNQETLVEAVLNRGDKGLLTVSNHMSVYDDPGLWSALIPFWSRAGRback to top mRNA from alignment at H-elongata_contig13006:6185..8435+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13006.2193.1 ID=mRNA_H-elongata_contig13006.2193.1|Name=mRNA_H-elongata_contig13006.2193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2251bp|location=Sequence derived from alignment at H-elongata_contig13006:6185..8435+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13006:6185..8435+ >mRNA_H-elongata_contig13006.2193.1 ID=mRNA_H-elongata_contig13006.2193.1|Name=mRNA_H-elongata_contig13006.2193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig13006:6185..8435+ (Himanthalia elongata Himel1 dioecious)back to top |