mRNA_H-elongata_contig130026.2192.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130026.2192.1
Unique NamemRNA_H-elongata_contig130026.2192.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A6H5JMB5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB5_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.590e-45
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    1 GNFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREG-SSSGLHHDFHDNLYVLLRGKKTFRCF 282
            G+FL +L++KNDLLYLTTQEL +DP GRP LMSAPLDRLR+DFPLRP L GALVPQNVNLWMG+++EG SSSGLHHDFHDNLYVLLRGKKTFR F
Sbjct:  113 GDFLGELERKNDLLYLTTQELGLDPTGRPGLMSAPLDRLREDFPLRPGLAGALVPQNVNLWMGHTKEGGSSSGLHHDFHDNLYVLLRGKKTFRLF 207
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: D8LM10_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM10_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.360e-44
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 GNFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREG-SSSGLHHDFHDNLYVLLRGKKTFRCF 282
            G+FL +L++KNDLLYLTTQEL +DP GRP LMSAPLDRLR+DFPLRP L GALVPQNVNLWMG+++EG SSSGLHHDFHDNLYVLLRGKK FR F
Sbjct:  113 GDFLGELERKNDLLYLTTQELGLDPTGRPGLMSAPLDRLRNDFPLRPGLAGALVPQNVNLWMGHTKEGGSSSGLHHDFHDNLYVLLRGKKMFRLF 207
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A7S1T586_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T586_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 1.260e-32
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 GNFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
              F+ ++   +D LYLTTQ +   P G P L + P+ RL DDFP  P+L+G LVPQN+NLWMG + +G+SSGLHHDFHDNLYVLLRG+K FR +
Sbjct:   17 AEFVGRVASGDDTLYLTTQAVKAAPDGFPELHAGPVTRLADDFPTVPSLLGGLVPQNINLWMGAAPDGASSGLHHDFHDNLYVLLRGRKRFRLY 110
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: L8GL11_ACACA (JmjC domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GL11_ACACA)

HSP 1 Score: 127 bits (319), Expect = 2.020e-32
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 GNFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
            G FL  L   +DL Y+TTQ++  DP GRP +++ PL  L DDFPLRP LMG LVP ++NLWMG SREGS SGLHHD+HDNLYVLL+G+K F+ F
Sbjct:  206 GTFLDGLAAGDDLHYMTTQDITRDPDGRPEIIAPPLTLLADDFPLRPALMGHLVPASLNLWMGNSREGSMSGLHHDYHDNLYVLLKGRKRFQLF 299
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A7R9V931_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V931_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 3.510e-32
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   31 NDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
            +D +YLTTQ +     G P LM  PL  LR DF LRP+L+G LVPQ VNLWMG SR G+SSGLHHDFHDNLYVLLRG+K FR F
Sbjct:    7 DDTVYLTTQAVDEAADGHPELMGHPLTALRGDFELRPSLVGNLVPQQVNLWMGVSRGGASSGLHHDFHDNLYVLLRGRKRFRLF 90
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A5J4XLD0_9CHLO (JmjC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XLD0_9CHLO)

HSP 1 Score: 125 bits (315), Expect = 4.260e-32
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 GNFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
            G  +++L K ND LYLTTQE  VD  G P +M  P+  L+ DFPLRP  MG LVPQ +NLWMG +  G+SSGLHHDFHDNLY+LLRG+K FR +
Sbjct:  120 GQLVQQLHKGNDSLYLTTQEAGVDGDGHPHVMGFPVKELKGDFPLRPECMGNLVPQQINLWMGAAPNGASSGLHHDFHDNLYILLRGRKRFRLY 213
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A7S0TJP2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJP2_HEMAN)

HSP 1 Score: 120 bits (301), Expect = 8.760e-32
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    4 NFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
            +FL   +K + LLYLTTQ L +   GRP LMS PL  L+DDFPLRP LMG LVP N NLWMG +R  SSSGLHHD+HDNLYVL+ G+K F  +
Sbjct:  160 DFLADFEKPDSLLYLTTQPLPLRDDGRPSLMSHPLTDLQDDFPLRPRLMGRLVPANYNLWMGNNRGESSSGLHHDYHDNLYVLISGRKRFELY 252
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A7S2XJB1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJB1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.160e-31
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 GNFLKKLK--KKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTF 273
            G FL+ L+  +K DL Y+TTQ L VD  GRP+L+S PL  L +DFPLRP L G LVP N NLWMGYS+EGS+SGLHHD+HDN Y+LL+G K F
Sbjct:  130 GEFLQILQDPQKRDLYYMTTQPLQVDEEGRPQLLSEPLISLMNDFPLRPKLAGNLVPMNCNLWMGYSKEGSTSGLHHDYHDNFYMLLKGNKCF 222
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: A0A2P4XX51_9STRA (Ion channel (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XX51_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.470e-31
Identity = 49/84 (58.33%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   31 NDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
            +++ YLTTQE+A +  GRP +M+  + +L+ DFPLRP LMG L+PQN+N+WMG ++ GSS+GLHHD HDNLY+L+RGKK FR +
Sbjct:  135 DEMHYLTTQEVAFEEDGRPEIMAPFMKQLQQDFPLRPKLMGHLIPQNINMWMGNNKHGSSTGLHHDHHDNLYILMRGKKRFRLY 218
[Close]
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Match: F0W9V9_9STRA (Ion channel putative n=31 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9V9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.240e-31
Identity = 53/93 (56.99%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    4 NFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLMGALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF 282
            +FL+ +++ + L YLTTQ++     GRP LM+  + RLR+DFP+RP LMG L+PQN+N+WMG++R G+SSGLHHD+HDN+Y+LLRGKK+FR +
Sbjct: 2184 SFLQLVERGDTLHYLTTQDVEEGESGRPELMAPFVQRLRNDFPIRPALMGNLIPQNINVWMGHARNGASSGLHHDYHDNMYILLRGKKSFRLY 2276
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130026.2192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMB5_9PHAE1.590e-4582.11JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM10_ECTSI1.360e-4481.05JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1T586_9CHLO1.260e-3257.45Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
L8GL11_ACACA2.020e-3262.77JmjC domain-containing protein n=1 Tax=Acanthamoeb... [more]
A0A7R9V931_9CHLO3.510e-3266.67Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A5J4XLD0_9CHLO4.260e-3260.64JmjC domain-containing protein n=1 Tax=Trebouxia s... [more]
A0A7S0TJP2_HEMAN8.760e-3262.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2XJB1_9STRA1.160e-3163.44Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2P4XX51_9STRA6.470e-3158.33Ion channel (Fragment) n=1 Tax=Phytophthora palmiv... [more]
F0W9V9_9STRA9.240e-3156.99Ion channel putative n=31 Tax=Albugo laibachii Nc1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130026contigH-elongata_contig130026:2..1047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue9.3e-38
Seed eggNOG ortholog2880.D8LM10
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006338,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016577,GO:0019538,GO:0031974,GO:0031981,GO:0032451,GO:0032452,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.Cupin-like domain
EggNOG OGsCOG1226@1,KOG2508@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.1998243-CDS-H-elongata_contig130026:1..581622929773.1998243-CDS-H-elongata_contig130026:1..58Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130026 2..58 +
1691679152.2246854-CDS-H-elongata_contig130026:1..581691679152.2246854-CDS-H-elongata_contig130026:1..58Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130026 2..58 +
1622929773.2145803-CDS-H-elongata_contig130026:822..10471622929773.2145803-CDS-H-elongata_contig130026:822..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130026 823..1047 +
1691679152.2334714-CDS-H-elongata_contig130026:822..10471691679152.2334714-CDS-H-elongata_contig130026:822..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130026 823..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130026.2192.1prot_H-elongata_contig130026.2192.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130026 2..1047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130026.2192.1

>prot_H-elongata_contig130026.2192.1 ID=prot_H-elongata_contig130026.2192.1|Name=mRNA_H-elongata_contig130026.2192.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GNFLKKLKKKNDLLYLTTQELAVDPVGRPRLMSAPLDRLRDDFPLRPNLM
GALVPQNVNLWMGYSREGSSSGLHHDFHDNLYVLLRGKKTFRCF
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mRNA from alignment at H-elongata_contig130026:2..1047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130026.2192.1 ID=mRNA_H-elongata_contig130026.2192.1|Name=mRNA_H-elongata_contig130026.2192.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1046bp|location=Sequence derived from alignment at H-elongata_contig130026:2..1047+ (Himanthalia elongata Himel1 dioecious)
GGCAATTTTTTGAAGAAGCTGAAAAAAAAAAACGACCTTCTGTACCTGAC
GACACAGGTGACCCGGATTTGTTTTATCGGAAACATCCTTGGACGGAGGG
GGGCTGATGATGTGTAGGGGAGGGGAGTGAGAGGTGAAAGGTCGCGTCGA
GCCGTGTAGATGCGGTGCCTCTAATATTATTTTTTCTGCTGCGGTTGCTA
GTAACATAATAGTTTCCCCCGGGGTTTCCAATGAAGGCGGCCCACAACAC
TGTAATGCGAATTTGAGATCAGCGATTGGCCCCCGGAATCGCCGTTTTGG
ATTGGTGTCTTTTCTTCTTCTTTTTGTTGTTCTGCTTTGCCGGAGCTTAT
ATTATACGACATACAGGGAGAAAAACAAGCCTAGCAACAAACCGTCACAC
TTTTTGCGCTGAAACAAACCATGTATCCCGAGGGCCTGAAAGTTAGCATT
TTTGGAAGAGTCATGTGTCACCAAAGGGATATCCGCACCTCACGCGGAAT
GTTTTGCTGTTGAATAAAAAAATGGTATTACCGGCATTCAGACCTTCAGT
ACGCCCACCCACCCCTATCTCTAACCCATATACCCCCTGGAGGAAGGCCG
CGAACTCTCGAGACCACGACGCTGTGTTCCCTGACCGATTTGTGCTTGAA
CCGTCCCAATATTTCGTTGAAATGGTCTGAAGAAATGCGCGATATAGAGC
ACGTTCGATTCACAGCAAATTCTGTAGCGCTCACTATTGGACCCATACTG
CGCGGTATCGATATCTTTTGGAAATGTTTTCCCGCTTCCTTCTACTTCTC
ATTTGTTTCGGCGCGCCTCAGGAGCTGGCCGTGGATCCCGTAGGACGGCC
GCGACTGATGAGCGCGCCGCTCGACAGGCTGAGGGACGACTTCCCTCTGC
GGCCGAACCTAATGGGCGCCCTGGTTCCCCAAAACGTGAACCTGTGGATG
GGCTACAGCCGGGAAGGATCGAGCAGCGGGTTGCACCACGACTTCCACGA
CAACCTGTACGTGCTCCTGCGCGGGAAAAAAACTTTCAGGTGTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig130026:2..1047+

>mRNA_H-elongata_contig130026.2192.1 ID=mRNA_H-elongata_contig130026.2192.1|Name=mRNA_H-elongata_contig130026.2192.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig130026:2..1047+ (Himanthalia elongata Himel1 dioecious)
GGCAATTTTTTGAAGAAGCTGAAAAAAAAAAACGACCTTCTGTACCTGAC
GACACAGGGCAATTTTTTGAAGAAGCTGAAAAAAAAAAACGACCTTCTGT
ACCTGACGACACAGGAGCTGGCCGTGGATCCCGTAGGACGGCCGCGACTG
ATGAGCGCGCCGCTCGACAGGCTGAGGGACGACTTCCCTCTGCGGCCGAA
CCTAATGGGCGCCCTGGTTCCCCAAAACGTGAACCTGTGGATGGGCTACA
GCCGGGAAGGATCGAGCAGCGGGTTGCACCACGACTTCCACGACAACCTG
TACGTGCTCCTGCGCGGGAAAAAAACTTTCAGGTGTTTTGAGCTGGCCGT
GGATCCCGTAGGACGGCCGCGACTGATGAGCGCGCCGCTCGACAGGCTGA
GGGACGACTTCCCTCTGCGGCCGAACCTAATGGGCGCCCTGGTTCCCCAA
AACGTGAACCTGTGGATGGGCTACAGCCGGGAAGGATCGAGCAGCGGGTT
GCACCACGACTTCCACGACAACCTGTACGTGCTCCTGCGCGGGAAAAAAA
CTTTCAGGTGTTTT
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