mRNA_H-elongata_contig13.2188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13.2188.1
Unique NamemRNA_H-elongata_contig13.2188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13.2188.1 vs. uniprot
Match: D7FSS1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.820e-7
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  112 NSCLNTSSSDYRDCSAGSYSTTSYPGELYLDDCGFVDADIPDIIECFDNFGRDSLSNIHLGDNDFRDLPEYLFDG 336
            NSCL+  + D   C AGS        E+ L +CG  D D+ D++ECFDN GR S++ I LG N F  L   LFDG
Sbjct:   36 NSCLDPEN-DLYGCEAGST-------EINLSNCGIGDEDLEDLVECFDNVGRASVTAIWLGSNSFTSLAAGLFDG 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13.2188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS1_ECTSI3.820e-745.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13contigH-elongata_contig13:19610..22546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons7
Model size527
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.6952882-UTR-H-elongata_contig13:19609..196581622929772.6952882-UTR-H-elongata_contig13:19609..19658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 19610..19658 -
1691679152.029134-UTR-H-elongata_contig13:19609..196581691679152.029134-UTR-H-elongata_contig13:19609..19658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 19610..19658 -
1622929772.7136672-UTR-H-elongata_contig13:20019..200711622929772.7136672-UTR-H-elongata_contig13:20019..20071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 20020..20071 -
1691679152.0421443-UTR-H-elongata_contig13:20019..200711691679152.0421443-UTR-H-elongata_contig13:20019..20071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 20020..20071 -
1622929772.8209608-UTR-H-elongata_contig13:22501..225461622929772.8209608-UTR-H-elongata_contig13:22501..22546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 22502..22546 -
1691679152.1087368-UTR-H-elongata_contig13:22501..225461691679152.1087368-UTR-H-elongata_contig13:22501..22546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 22502..22546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.7269118-CDS-H-elongata_contig13:20071..200911622929772.7269118-CDS-H-elongata_contig13:20071..20091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 20072..20091 -
1691679152.0573425-CDS-H-elongata_contig13:20071..200911691679152.0573425-CDS-H-elongata_contig13:20071..20091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 20072..20091 -
1622929772.7433174-CDS-H-elongata_contig13:20446..205181622929772.7433174-CDS-H-elongata_contig13:20446..20518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 20447..20518 -
1691679152.0661337-CDS-H-elongata_contig13:20446..205181691679152.0661337-CDS-H-elongata_contig13:20446..20518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 20447..20518 -
1622929772.760111-CDS-H-elongata_contig13:20951..210011622929772.760111-CDS-H-elongata_contig13:20951..21001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 20952..21001 -
1691679152.0754898-CDS-H-elongata_contig13:20951..210011691679152.0754898-CDS-H-elongata_contig13:20951..21001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 20952..21001 -
1622929772.7761059-CDS-H-elongata_contig13:21266..213561622929772.7761059-CDS-H-elongata_contig13:21266..21356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 21267..21356 -
1691679152.0828702-CDS-H-elongata_contig13:21266..213561691679152.0828702-CDS-H-elongata_contig13:21266..21356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 21267..21356 -
1622929772.7896693-CDS-H-elongata_contig13:21596..216841622929772.7896693-CDS-H-elongata_contig13:21596..21684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 21597..21684 -
1691679152.0930932-CDS-H-elongata_contig13:21596..216841691679152.0930932-CDS-H-elongata_contig13:21596..21684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 21597..21684 -
1622929772.8053105-CDS-H-elongata_contig13:22440..225011622929772.8053105-CDS-H-elongata_contig13:22440..22501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 22441..22501 -
1691679152.100731-CDS-H-elongata_contig13:22440..225011691679152.100731-CDS-H-elongata_contig13:22440..22501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 22441..22501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13.2188.1prot_H-elongata_contig13.2188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13 20072..22501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13.2188.1

>prot_H-elongata_contig13.2188.1 ID=prot_H-elongata_contig13.2188.1|Name=mRNA_H-elongata_contig13.2188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MKPVLYLIFTTLAFPVIVTNGLNSCLNTSSSDYRDCSAGSYSTTSYPGEL
YLDDCGFVDADIPDIIECFDNFGRDSLSNIHLGDNDFRDLPEYLFDGTWK
TICSSTCLKACLMVLPNSNHCTSAAT*
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mRNA from alignment at H-elongata_contig13:19610..22546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13.2188.1 ID=mRNA_H-elongata_contig13.2188.1|Name=mRNA_H-elongata_contig13.2188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2937bp|location=Sequence derived from alignment at H-elongata_contig13:19610..22546- (Himanthalia elongata Himel1 dioecious)
CCGCTAGATAGCATCGAGTACAACCTGGAAGCAATTAGCCGAGGCATGAA
GCCCGTCTTATATCTGATCTTCACTACACTGGCGTTTCCGGTGATCGTCA
CAAATGGTGAGCATATCCCAAAGCGACAATGAAGGTCGCAGCAACCACCC
CTTCTACGATCTATAATAAGATTCGCGTTCTTCGTACATTTATTTATATA
CTCGGTGTTTTATATCGGCATCGGTTTTTCCAGCTGCAGGAATGGGCCCG
TCACCTTTGTGCTGCTCTAGTCTTCACCGTTTTTTTACTTCCTTCTGCAT
GTCCACTCAATGAGAAATGAGTGCTGGTATAGAAGCCTTCTTCATTTCCT
GATGGGAAGCTGATGCATTGAACGTTCATTTTATCAATCCTTGGACCCGG
TGTTAGAGCTCATATTTACTTTTTGCAAAATTTGGGCTATAATATGCCCG
AAGTAAATTTCGCCTAGACTGGACTATGTGTACGTAGGAGTCGCGTGGAG
CGCCCTTGAGTTTAATCAGACGTGGATTTCACAGACAGAACTCCTCGCCT
TGCTGCCTTGTGCTAGGCATTGTTTATGTATTTTGAGTGTTATCCATTGT
TAGGTTTTGTTCGGTTGGCGAAATTCTAACGTGCGGTGAAACGTTTGCAT
GTCGAGAATATGTAACGCCCAGCGTTAACCCCAGCCCAACACACGTCACC
CGTCACGCATCCCGTATAATGCGGGTGTAAGAATAACGCTATCAACTATA
TTTGGTATCTAGATCGAATACACGCGAAAGTGTCTTATGCAAAACCTACC
TTCTCTCGTCCCGGCTGGGGGTGGGGTCTTTGCTTTGTCCGATCCCCGCG
ATGCTGATCAAGGTTTGAACTCCTGCCTGAACACCTCGAGCTCGGACTAT
CGCGATTGCAGCGCCGGATCATATTCTACTACTAGTTACCCAGGGGAACT
GTAAGCCATTTTGTGCTATAGCGAGTGATGGCATAGTTTCAATCTCTTCG
TGAAAGCTAGGATTGGTGCGCCACAATATATTACGAGCAGGACACGTACC
TTTGTGGTTTGATGAACACGTTTTGAAATGAGGGCGCTTAGAATTGAAAA
GTCGAGTTCGGTGAGGCAGTGAAAATACAAGACTTGCGCAAGCCGGAAAT
ATTGCGAAATGATCATTTGGATATCAACCTTGTACGGCAGGTATTTGGAC
GACTGTGGGTTTGTGGACGCCGACATTCCCGACATCATAGAATGCTTCGA
TAACTTCGGGCGCGATTCCCTATCCAATATGTAAGTGACAAGCCAAGCGG
GGTGTTTTCCTCATATGTTATTTGATACCCGCTGGTACACCTATCCGTTC
CTTATCATCATTCTCTGGAAGATATAGTTCCGCATTTAGTCTGCTCTCTT
TGCGGTTCCATGTACAAACTTGAATGCTGATTGAGTCAGCGCATGCATAT
TTAGGGGATGAATTAAACGATTGATTGTGCCGACAACTCTCTTTGCCTAT
CCACGGTTTCGCATCGCTTTCAATTCAACGAAATCTACCACCCAGTCACC
TTGGAGACAACGACTTCAGAGACCTTCCTGAGTATTTGTTCGACGGTTAC
TGGCCAAAAATGGAAGGGCTGTGGATCGACAACACGAACATCTCCACTCT
CCCGGCTGGCTTGCTATCTAATTTGACTAACTTGGAATATTTGTAAGCGC
CGTACCATTTGGTCGCGAAGGTTTACCTGTCCGTCGTGATATGTTGTTGA
GGAGTGGACTCGAAGCCTCAGTCTTCATTGATTTGTGTAGGATACTTAAC
ATTAATCCTCGTAACCGTCACCCGTTCACTGTCGCACATAATTCGCCATA
TTGCCCCTGCTCTATAATTGGCGCTTTACTAGATTGGCGTAATAATATAT
AAAGTTGGTAATGCTAACCGTAGAGCTATAAACTATTTCAGAACTAAGTC
GAGATGGAGATACTTCGCTGTTCATGGCATTTTACCCGTTGGTTCTCTTT
CGTCAATCCCGACTCTGCTCGACGTCAGGAACCTGGAAGACAATTTGCTC
GAGTACTTGCCTGAAGGCGTGTTTGATGGTCTTACCGAACTCGAATCATT
GTGAGTTTCTCCTACTGGCTGGCAACCTCGTTGTAGGTGTCATATTTGAG
AGAGGAGCTAGATAGATTCAAGCTTCCACGGTAAGTACGCACATGTGTGA
CACGCCTGGAAAGAGGCTTTGGGGCGGCAACAACACGGCCGTTTTTCTTG
CTGTGTAGAGTAAACGCCGCGCACTGATCTTCGATTGCTACATTCACCAA
ATAAGATTTTACACGATAGGTCTTATAGATGATCTTGTGAGATTTCCGAG
GCAACGAATTTCCATTTAGTTTTAAGCTAAACACGATTATTCTGTCTTGT
GACGCCAACGCCGCGGTTACCGCCACTATGTTACTGGAATTTTCCCCATG
TACAGGCACCTCTGCGGCAACGTGATCGAGGGCTTTCCCACCGGCGTGTT
CTCTGACCTCGAAAGCATGGAACTTTTGTAAGTAAATAAAGACTCTCATA
ATATGTTTGAGGCGAAATGGATCGTACTACATGGGTAAAACCTGTGTACT
AATATTGCACTGGAAAACTTCATGGGGGACAGTGAAACTTGCTTCCAGTT
TCCGAAATGCCCAACGCTTCGTAGCTAGGAGTGATAACGGAAACGAATGT
GTTTAGATTTATTGGTGAATAAGGCACGGAAGGGGGATATTATTGGCGAT
ATTTCTTTATTATAGACATGGCAAGATCATAAATGGTCTACTATTTCATT
AAGTGTGAACAGTCATTAGTTCTCTCCGCAAATATTCTTGCCGCGCTTTT
TTTCCGGTGAAATGACTTGCTGTTTGTCGGCAAATTAGGGATCTCGAAGA
CAATAAGCTTAGCAAGCTTAAGGCGAATGTCTTCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig13:19610..22546-

>mRNA_H-elongata_contig13.2188.1 ID=mRNA_H-elongata_contig13.2188.1|Name=mRNA_H-elongata_contig13.2188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig13:19610..22546- (Himanthalia elongata Himel1 dioecious)
ATGAAGCCCGTCTTATATCTGATCTTCACTACACTGGCGTTTCCGGTGAT
CGTCACAAATGATGAAGCCCGTCTTATATCTGATCTTCACTACACTGGCG
TTTCCGGTGATCGTCACAAATGGTTTGAACTCCTGCCTGAACACCTCGAG
CTCGGACTATCGCGATTGCAGCGCCGGATCATATTCTACTACTAGTTACC
CAGGGGAACTGTTTGAACTCCTGCCTGAACACCTCGAGCTCGGACTATCG
CGATTGCAGCGCCGGATCATATTCTACTACTAGTTACCCAGGGGAACTGT
ATTTGGACGACTGTGGGTTTGTGGACGCCGACATTCCCGACATCATAGAA
TGCTTCGATAACTTCGGGCGCGATTCCCTATCCAATATGTATTTGGACGA
CTGTGGGTTTGTGGACGCCGACATTCCCGACATCATAGAATGCTTCGATA
ACTTCGGGCGCGATTCCCTATCCAATATTCACCTTGGAGACAACGACTTC
AGAGACCTTCCTGAGTATTTGTTCGACGTCACCTTGGAGACAACGACTTC
AGAGACCTTCCTGAGTATTTGTTCGACGGAACCTGGAAGACAATTTGCTC
GAGTACTTGCCTGAAGGCGTGTTTGATGGTCTTACCGAACTCGAATCATT
GAACCTGGAAGACAATTTGCTCGAGTACTTGCCTGAAGGCGTGTTTGATG
GTCTTACCGAACTCGAATCATTGCACCTCTGCGGCAACGTGAGCACCTCT
GCGGCAACGTGA
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