mRNA_H-elongata_contig129852.2179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129852.2179.1
Unique NamemRNA_H-elongata_contig129852.2179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.540e-48
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVA+EF I+VEKVHISETATDRVAN+SPTAASMSTDLYGMAALDACEQIT RLRPV A+
Sbjct:  279 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVANEFNIDVEKVHISETATDRVANTSPTAASMSTDLYGMAALDACEQITERLRPVMAE 373
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BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 5.460e-46
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            F+NQ GALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVA+EF I+VEKVHISETATDRVAN++PTAASMSTDLYGMAALDACEQIT RLRPV A+
Sbjct: 1167 FLNQAGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVANEFNIDVEKVHISETATDRVANTTPTAASMSTDLYGMAALDACEQITERLRPVMAQ 1261
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BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.130e-41
Identity = 78/95 (82.11%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            FMNQGGALVHVY DGTVLVSHGGTEMGQGLHTKVCQ+ A  FG+E E+VHI+ETATDRVANS PTAASMSTDLYGMA LDAC+QI  RL PV A+
Sbjct: 1132 FMNQGGALVHVYQDGTVLVSHGGTEMGQGLHTKVCQIAARAFGLEEEQVHIAETATDRVANSQPTAASMSTDLYGMATLDACQQILRRLAPVRAR 1226
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BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A7R9WYY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYY3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.040e-39
Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITA 261
            FMNQGGALVHVY DGTVLVSHGGTEMGQGLHTKVCQV A  FGI ++ V++++++TD+VAN+ PTAASMSTD+YGMA LDAC QI A
Sbjct:   34 FMNQGGALVHVYTDGTVLVSHGGTEMGQGLHTKVCQVAAQAFGIPIDDVYVNDSSTDKVANTIPTAASMSTDMYGMATLDACRQILA 120
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BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A7S3AHC4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AHC4_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 1.400e-39
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPV 276
            FMNQGGALVH+Y DGTVLV+HGGTEMGQGLHTKV QV A  FGI +  VHI+ETATD+VANS PTAAS STDLYGMA LDAC QI ARL+P+
Sbjct:   11 FMNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAARAFGISLSAVHIAETATDKVANSQPTAASASTDLYGMATLDACNQILARLKPL 102
[Close]
BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A7S1XKK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKK2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.640e-39
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            FMNQGGALVHVY DGTVLVSHGGTEMGQGLHTK+  V A  FGI V  VH++ETATD+VAN+SPTAASMSTDLYGMA LDACEQI  +LRPV  K
Sbjct:  396 FMNQGGALVHVYTDGTVLVSHGGTEMGQGLHTKMAAVAAQTFGIPVHMVHVAETATDKVANASPTAASMSTDLYGMAVLDACEQILEQLRPVREK 490
[Close]
BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.040e-38
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            FMNQGGALVHVY DGTVLVSHGGTEMGQGLHTKV Q  A  FGI  E VH++ETATDRV N+SPTAASMSTDLY MAALDACEQI  RL+PVA K
Sbjct: 1050 FMNQGGALVHVYTDGTVLVSHGGTEMGQGLHTKVIQTCARAFGISDEWVHVAETATDRVPNASPTAASMSTDLYCMAALDACEQIKERLKPVAEK 1144
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BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: F0Y2X4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2X4_AURAN)

HSP 1 Score: 146 bits (368), Expect = 1.040e-38
Identity = 70/91 (76.92%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    4 MNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPV 276
            +NQGG+LVH+Y DGT+LVSHGGTEMGQGLHTKVCQVVA  FG+ +++VH+ +TA+D+VANS+ TAASMSTDLYGMAALDAC QI ARLRPV
Sbjct: 1049 LNQGGSLVHLYTDGTLLVSHGGTEMGQGLHTKVCQVVAQAFGVAIDRVHVEDTASDKVANSAATAASMSTDLYGMAALDACHQILARLRPV 1139
[Close]
BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A6A5A7B9_9STRA (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A7B9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.560e-38
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            FMNQGGALVHVY DG+VLVSHGGTEMGQGLHTKV Q+VA  FGI  + V I +T+TD+VAN+ P+A SMSTDLYGMAALDACEQI ARL PV AK
Sbjct:  208 FMNQGGALVHVYTDGSVLVSHGGTEMGQGLHTKVIQIVAKAFGISCDDVSIHDTSTDKVANAQPSAGSMSTDLYGMAALDACEQILARLGPVVAK 302
[Close]
BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Match: A0A1V9Z6R8_9STRA (Xanthine dehydrogenase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6R8_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.720e-38
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 FMNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHISETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK 285
            FMNQGGALVHVY DG+VLVSHGGTEMGQGLHTKV Q+VA  FGI ++ V I +T+TD+VAN+ P+AASMSTDLYGMA LDACEQI ARL PVAA+
Sbjct: 1039 FMNQGGALVHVYADGSVLVSHGGTEMGQGLHTKVMQIVAKAFGIPMDSVTIHDTSTDKVANTQPSAASMSTDLYGMATLDACEQILARLAPVAAR 1133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129852.2179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW60_9PHAE1.540e-4892.63Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
D7G4V3_ECTSI5.460e-4689.47Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
W7TFQ7_9STRA1.130e-4182.11Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A7R9WYY3_9STRA1.040e-3975.86Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S3AHC4_9EUKA1.400e-3978.26Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1XKK2_9STRA3.640e-3978.95Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A836C8N1_9STRA1.040e-3881.05Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
F0Y2X4_AURAN1.040e-3876.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6A5A7B9_9STRA3.560e-3876.84Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ap... [more]
A0A1V9Z6R8_9STRA6.720e-3876.84Xanthine dehydrogenase n=1 Tax=Achlya hypogyna Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129852contigH-elongata_contig129852:2..982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129852.2179.1prot_H-elongata_contig129852.2179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129852 5..982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.7917268-UTR-H-elongata_contig129852:1..41622929771.7917268-UTR-H-elongata_contig129852:1..4Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129852 2..4 +
1691679151.6396985-UTR-H-elongata_contig129852:1..41691679151.6396985-UTR-H-elongata_contig129852:1..4Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129852 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.8107495-CDS-H-elongata_contig129852:4..1451622929771.8107495-CDS-H-elongata_contig129852:4..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129852 5..145 +
1691679151.653271-CDS-H-elongata_contig129852:4..1451691679151.653271-CDS-H-elongata_contig129852:4..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129852 5..145 +
1622929771.8254416-CDS-H-elongata_contig129852:841..9821622929771.8254416-CDS-H-elongata_contig129852:841..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129852 842..982 +
1691679151.662956-CDS-H-elongata_contig129852:841..9821691679151.662956-CDS-H-elongata_contig129852:841..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129852 842..982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129852.2179.1

>prot_H-elongata_contig129852.2179.1 ID=prot_H-elongata_contig129852.2179.1|Name=mRNA_H-elongata_contig129852.2179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MNQGGALVHVYLDGTVLVSHGGTEMGQGLHTKVCQVVASEFGIEVEKVHI
SETATDRVANSSPTAASMSTDLYGMAALDACEQITARLRPVAAK
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mRNA from alignment at H-elongata_contig129852:2..982+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129852.2179.1 ID=mRNA_H-elongata_contig129852.2179.1|Name=mRNA_H-elongata_contig129852.2179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig129852:2..982+ (Himanthalia elongata Himel1 dioecious)
TTCATGAACCAGGGCGGAGCGTTAGTGCACGTATACTTGGACGGCACGGT
GTTGGTGAGCCACGGTGGCACGGAAATGGGGCAGGGTTTGCACACCAAGG
TGTGCCAGGTCGTGGCCAGCGAGTTCGGCATCGAAGTCGAGAAGGTGATG
ATGGTTGAGGATGTAATATAATAGAGCTACTGCTGCTGTTGCTGCTGCTA
CAAGAGGGAGAACTCGAGGGCGAGAAAACAGCGTTCTAAAAACAACGTTT
TTGGGGGTATTGTGTTGTATTCGTTTATTGATATTTTATAAGCTGGTCGG
CCCTGATCTCATTCGTTTGATCCCAATTTCCTCAACAAAGCCCTTCCTTC
GTAAGTTCCCTTCCTTTGTTTATTGCTTTAGTGTTGATTGCTGTTGATTT
TGATTTTGATTTTTATCAATTTGCATTAGACCGCGCGAACCGGCATGGTA
TGTAATAAGGGGGCGCCACGCCGATTTGCGAATACTCCCTTCTTATTATG
GGGAACTATCCCTTAATGACTTAATGAATGAACACCTTAATCAATGAACG
CGTTGGATTGGCCTATTCTACTCGTGTTGCTTACGCAACCGTGCCGGACT
CCGCTGCCTTCCCAGGAAGTAATCACTAGTAGTAGGATAAATACTAGACT
ATGCTATACTATACTATATTGTACAATACTGTACAATACAGTACTGTACT
ATACTATACTATAATATAATATACTATAATATACTCTTTACAGCACTCCC
TATGCTTTCGCGGGCCGCCAGGCTGCATACGCTCAATGACCCTAAATAAT
TTCGCATTGACATTGAGACATGCACATCGGCCATGAACAGGTGCACATTT
CCGAGACGGCAACCGATCGAGTCGCCAACTCCTCCCCCACGGCGGCATCC
ATGTCCACGGACCTCTACGGCATGGCCGCCCTCGACGCTTGCGAGCAGAT
CACCGCGAGACTCAGGCCGGTCGCCGCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig129852:2..982+

>mRNA_H-elongata_contig129852.2179.1 ID=mRNA_H-elongata_contig129852.2179.1|Name=mRNA_H-elongata_contig129852.2179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig129852:2..982+ (Himanthalia elongata Himel1 dioecious)
ATGAACCAGGGCGGAGCGTTAGTGCACGTATACTTGGACGGCACGGTGTT
GGTGAGCCACGGTGGCACGGAAATGGGGCAGGGTTTGCACACCAAGGTGT
GCCAGGTCGTGGCCAGCGAGTTCGGCATCGAAGTCGAGAAGATGAACCAG
GGCGGAGCGTTAGTGCACGTATACTTGGACGGCACGGTGTTGGTGAGCCA
CGGTGGCACGGAAATGGGGCAGGGTTTGCACACCAAGGTGTGCCAGGTCG
TGGCCAGCGAGTTCGGCATCGAAGTCGAGAAGGTGCACATTTCCGAGACG
GCAACCGATCGAGTCGCCAACTCCTCCCCCACGGCGGCATCCATGTCCAC
GGACCTCTACGGCATGGCCGCCCTCGACGCTTGCGAGCAGATCACCGCGA
GACTCAGGCCGGTCGCCGCCAAGGTGCACATTTCCGAGACGGCAACCGAT
CGAGTCGCCAACTCCTCCCCCACGGCGGCATCCATGTCCACGGACCTCTA
CGGCATGGCCGCCCTCGACGCTTGCGAGCAGATCACCGCGAGACTCAGGC
CGGTCGCCGCCAAG
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