mRNA_H-elongata_contig129775.2173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129775.2173.1
Unique NamemRNA_H-elongata_contig129775.2173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129775.2173.1 vs. uniprot
Match: D7FK35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK35_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.770e-15
Identity = 46/96 (47.92%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:    1 LLRCDPRCLKLDQELRRKFGGARIAGGDRENGAPGGRARKTRRGIMPRGMGNT----------LASGLARKRLAVSVPKDDWPKPPSFVGGGLGMK 258
            LLRCDPRCLKLDQELRRKFGG                                          +++ L  KRL VS PKDDWPKPPSFVGGGLGMK
Sbjct:  153 LLRCDPRCLKLDQELRRKFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSASLMLKRLVVSAPKDDWPKPPSFVGGGLGMK 248
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BLAST of mRNA_H-elongata_contig129775.2173.1 vs. uniprot
Match: A0A6H5LA68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA68_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.720e-9
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  145 GMGNTLASGLARKRLAVSVPKDDWPKPPSFVGGGLGMK 258
            G  N++++ L  KRL VS PK+DWPKPPSFVGGGLGMK
Sbjct:    7 GNNNSVSASLTLKRLVVSAPKEDWPKPPSFVGGGLGMK 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129775.2173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK35_ECTSI7.770e-1547.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA68_9PHAE2.720e-968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129775contigH-elongata_contig129775:621..878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog2880.D7FK35
Preferred nameTCF25
KEGG koko:K14206
KEGG TC2.A.17.4.1,2.A.17.4.2
KEGG Pathwayko04974,map04974
GOsGO:0000122,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006412,GO:0006414,GO:0006417,GO:0006508,GO:0006511,GO:0006518,GO:0006807,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0072344,GO:0072359,GO:0080090,GO:0140110,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990112,GO:1990116,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ribosome-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2422@1,KOG2422@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.2804334-CDS-H-elongata_contig129775:620..8781622929771.2804334-CDS-H-elongata_contig129775:620..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129775 621..878 -
1691679151.4330356-CDS-H-elongata_contig129775:620..8781691679151.4330356-CDS-H-elongata_contig129775:620..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129775 621..878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129775.2173.1prot_H-elongata_contig129775.2173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129775 621..878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129775.2173.1

>prot_H-elongata_contig129775.2173.1 ID=prot_H-elongata_contig129775.2173.1|Name=mRNA_H-elongata_contig129775.2173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LLRCDPRCLKLDQELRRKFGGARIAGGDRENGAPGGRARKTRRGIMPRGM
GNTLASGLARKRLAVSVPKDDWPKPPSFVGGGLGMK
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mRNA from alignment at H-elongata_contig129775:621..878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129775.2173.1 ID=mRNA_H-elongata_contig129775.2173.1|Name=mRNA_H-elongata_contig129775.2173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig129775:621..878- (Himanthalia elongata Himel1 dioecious)
TTGCTTCGTTGCGATCCTCGCTGCCTGAAGCTCGACCAAGAGCTCCGCCG
AAAGTTCGGCGGAGCAAGGATCGCCGGCGGCGATCGGGAAAATGGTGCTC
CGGGAGGTCGAGCGCGAAAAACAAGGCGGGGGATAATGCCGCGTGGGATG
GGAAACACCCTGGCGTCCGGGTTAGCCCGGAAGAGGCTGGCCGTCAGCGT
GCCAAAGGACGACTGGCCGAAGCCCCCTTCTTTCGTCGGCGGTGGGCTGG
GCATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig129775:621..878-

>mRNA_H-elongata_contig129775.2173.1 ID=mRNA_H-elongata_contig129775.2173.1|Name=mRNA_H-elongata_contig129775.2173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig129775:621..878- (Himanthalia elongata Himel1 dioecious)
TTGCTTCGTTGCGATCCTCGCTGCCTGAAGCTCGACCAAGAGCTCCGCCG
AAAGTTCGGCGGAGCAAGGATCGCCGGCGGCGATCGGGAAAATGGTGCTC
CGGGAGGTCGAGCGCGAAAAACAAGGCGGGGGATAATGCCGCGTGGGATG
GGAAACACCCTGGCGTCCGGGTTAGCCCGGAAGAGGCTGGCCGTCAGCGT
GCCAAAGGACGACTGGCCGAAGCCCCCTTCTTTCGTCGGCGGTGGGCTGG
GCATGAAGTTGCTTCGTTGCGATCCTCGCTGCCTGAAGCTCGACCAAGAG
CTCCGCCGAAAGTTCGGCGGAGCAAGGATCGCCGGCGGCGATCGGGAAAA
TGGTGCTCCGGGAGGTCGAGCGCGAAAAACAAGGCGGGGGATAATGCCGC
GTGGGATGGGAAACACCCTGGCGTCCGGGTTAGCCCGGAAGAGGCTGGCC
GTCAGCGTGCCAAAGGACGACTGGCCGAAGCCCCCTTCTTTCGTCGGCGG
TGGGCTGGGCATGAAG
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