mRNA_H-elongata_contig129762.2170.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 154 bits (389), Expect = 4.030e-45 Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1
Query: 1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
MVATQ+F+G+AA+LIASS AFVAPMA+RS APASSSS SAGS YV TLPGAPFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLA+LG+LVAE
Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAE 101
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 151 bits (382), Expect = 5.180e-44 Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 1
Query: 1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
MVA+QMF+GTAA+LIASS AFVAP+A+RS APAS++S SAGS YV TLPGAPF DGKIFDPL LSDGAAP +IKKWREAEIKHGRVAMLA+LGILVAE
Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAE 101
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE) HSP 1 Score: 147 bits (372), Expect = 2.430e-43 Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 1
Query: 1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
MVA+QMF+GTAA+LIASS AFV PMA+RS+A SSS SAGS YV TLPGAPF DGKIFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE
Sbjct: 1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE 101
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 147 bits (371), Expect = 9.520e-43 Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 1
Query: 1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAEVRAW 315
MVA+QMF+GTAA+LIASS AFVAPMA+RS+ SS SAGS YV TLPGAPF DGKIFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE A+
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEFWAF 105
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 143 bits (361), Expect = 7.130e-41 Identity = 76/98 (77.55%), Postives = 84/98 (85.71%), Query Frame = 1
Query: 10 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
+ MF+GTAA+LIASS AFVAPMA+RS APASS+S SAGS YV TLPGAPFGDGKIFDPL LSDGA P EIK WREAEIKHGRVAMLA +G++VAE
Sbjct: 5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAE 102
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 121 bits (304), Expect = 2.620e-32 Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 1
Query: 10 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
+ MF+GTAA+LIASSAAFV PMA+RS APASS+S SAG+ Y+ TLPGA +GKIFD L L+DGA P EIK WREAEIKHGRVAMLA +G++VAE
Sbjct: 5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAE 99
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.630e-30 Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 1 MVATQMFVGTAASLIASSAAFVAPMAI--RSLAPASSSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAEV 306
MV +Q+F+GTAA+LIASSAAFVAP+A S+A ++SS +AGS Y +LPGAPFG +GK FDP GL+ PE IKKWREAE+KHGRV+MLAA+GILV+EV
Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEV 107
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.870e-29 Identity = 80/167 (47.90%), Postives = 91/167 (54.49%), Query Frame = 1
Query: 1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPAS-SSSLKMQSAGSAYVETLPGAPFGDGK-----------------------------------------------------------------IFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
MVA+QMF+GTAA+LIASS AFVAP+A+RS+A + SSS M SAGS YV TLPGAPF DGK IFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE 167
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 106 bits (264), Expect = 8.460e-26 Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 10 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
T VG A+ AS AF+ P A +S++ +M SAGS YV TLPGAPF DGK++DP+GLS A PE+IKKWREAEIKHGRVAMLA++G+LVAE
Sbjct: 56 TGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAE 152
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A061SPG6_9CHLO (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SPG6_9CHLO) HSP 1 Score: 84.3 bits (207), Expect = 1.220e-17 Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1
Query: 61 FVAPMAIRSLAPASSSSLKMQ-SAGSAYVETLPG--APFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
F+ P + R+ A + S+++ Q SAG+ YV+TLPG APF D FDPL +S+GA+P++IK+WREAE+ HGRV+MLAALG +V E
Sbjct: 11 FLRPSSCRNXARSRRSTVRPQASAGTEYVKTLPGISAPFDD-PYFDPLKISEGASPDDIKRWREAELTHGRVSMLAALGFIVGE 93 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig129762.2170.1 >prot_H-elongata_contig129762.2170.1 ID=prot_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETback to top mRNA from alignment at H-elongata_contig129762:51..1021- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig129762.2170.1 ID=mRNA_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig129762:51..1021- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig129762:51..1021- >mRNA_H-elongata_contig129762.2170.1 ID=mRNA_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig129762:51..1021- (Himanthalia elongata Himel1 dioecious)back to top |