mRNA_H-elongata_contig129715.2168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129715.2168.1
Unique NamemRNA_H-elongata_contig129715.2168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.020e-61
Identity = 95/119 (79.83%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:    1 TVLSLAQGLGLEFVPLGALHFLDGPDIARCGSVNRFLYKAAVNEGVWQAARDRLWEGKVHVPPSAKMMTPKAGYIASLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRNEK 357
            TVLSLAQGLGLEFVPL AL FLD  DI  CG+ NRFL+KAA +EGVW+AARDRLWEGKV VP S++ M  K GYIASL+DSKRTWL  +ELTSFSWWFRFKQQAGEAWTAQDPWYRNEK
Sbjct:   24 TVLSLAQGLGLEFVPLSALLFLDARDIGACGAANRFLHKAAGDEGVWRAARDRLWEGKVFVPESSRAMRAKEGYIASLRDSKRTWLHAEELTSFSWWFRFKQQAGEAWTAQDPWYRNEK 142
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.560e-60
Identity = 94/120 (78.33%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:    1 TVLSLAQGLGLEFVPLGALHFLDGPDIARCGSVNRFLYKAAVNEGVWQAARDRLWEGKVHVPPSAKMMTPKAGYIASLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRNEKV 360
            TVLSLAQGLGLEFVPL AL FLD  DI  CG+ NRFL+KAA +EGVW+AARDRLWEGKV VP S++ M  K GYIASL+DSKRTWL  +ELTSFSWWFRFKQQAGEAWT+QDPWYRNEK 
Sbjct:   27 TVLSLAQGLGLEFVPLSALLFLDARDIEACGAANRFLHKAAGDEGVWRAARDRLWEGKVFVPESSRAMRAKEGYIASLRDSKRTWLDAEELTSFSWWFRFKQQAGEAWTSQDPWYRNEKA 146
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: A0A7S0XJN4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJN4_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 4.650e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:  112 YKAAVNEGV-WQAARDRLWEGKVHVPPSAKMMT-----PKAGYIASLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRN 351
            + AA+  G+ W+ A ++ W  KV++P  ++ +      PK  Y  +L DSKRT+L +DE+TSF+W FRFK  AGE WT  DPW+++
Sbjct:   53 WNAAMCSGLFWREACEKKWRDKVYIPKDSRELLNVKNDPKEAYRTALIDSKRTFLTIDEITSFTWSFRFKAAAGEHWTESDPWWQS 138
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: A0A7S0C110_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C110_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.160e-8
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  229 SLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRNEKVRQCRNH 378
            SL D+ R+W+ L+ELT+F+W FRFK+ AG+ WT  DPW+   K R+   H
Sbjct:    2 SLHDAIRSWITLEELTTFAWNFRFKELAGDVWTNDDPWWNGRKPRKVAFH 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKJ8_ECTSI2.020e-6179.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LH86_9PHAE2.560e-6078.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0XJN4_9RHOD4.650e-1543.02Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S0C110_9STRA4.160e-850.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129715contigH-elongata_contig129715:226..603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.9e-10
Seed eggNOG ortholog55529.EKX54868
EggNOG OGs2C7QR@1,2QWJK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-16_003220.1
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.8115487-CDS-H-elongata_contig129715:225..6031622929770.8115487-CDS-H-elongata_contig129715:225..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129715 226..603 -
1691679151.2865267-CDS-H-elongata_contig129715:225..6031691679151.2865267-CDS-H-elongata_contig129715:225..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129715 226..603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129715.2168.1prot_H-elongata_contig129715.2168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129715 226..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129715.2168.1

>prot_H-elongata_contig129715.2168.1 ID=prot_H-elongata_contig129715.2168.1|Name=mRNA_H-elongata_contig129715.2168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
TVLSLAQGLGLEFVPLGALHFLDGPDIARCGSVNRFLYKAAVNEGVWQAA
RDRLWEGKVHVPPSAKMMTPKAGYIASLQDSKRTWLGLDELTSFSWWFRF
KQQAGEAWTAQDPWYRNEKVRQCRNH
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mRNA from alignment at H-elongata_contig129715:226..603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129715.2168.1 ID=mRNA_H-elongata_contig129715.2168.1|Name=mRNA_H-elongata_contig129715.2168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig129715:226..603- (Himanthalia elongata Himel1 dioecious)
ACCGTGCTTTCCCTTGCCCAGGGGCTCGGACTCGAATTTGTGCCTCTAGG
AGCTCTGCATTTCCTTGACGGGCCGGATATAGCTCGTTGCGGCAGCGTAA
ATCGGTTTCTCTACAAGGCAGCCGTAAATGAGGGCGTATGGCAGGCGGCA
AGAGACCGTCTTTGGGAGGGAAAAGTCCACGTGCCACCAAGTGCTAAGAT
GATGACCCCAAAAGCGGGCTACATCGCTAGCTTGCAAGACTCAAAACGGA
CATGGCTCGGCCTAGACGAGCTAACGTCTTTTAGCTGGTGGTTTCGTTTC
AAGCAGCAAGCGGGGGAAGCTTGGACGGCCCAGGACCCATGGTACAGAAA
CGAGAAGGTGAGACAATGCCGCAACCAC
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Coding sequence (CDS) from alignment at H-elongata_contig129715:226..603-

>mRNA_H-elongata_contig129715.2168.1 ID=mRNA_H-elongata_contig129715.2168.1|Name=mRNA_H-elongata_contig129715.2168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig129715:226..603- (Himanthalia elongata Himel1 dioecious)
ACCGTGCTTTCCCTTGCCCAGGGGCTCGGACTCGAATTTGTGCCTCTAGG
AGCTCTGCATTTCCTTGACGGGCCGGATATAGCTCGTTGCGGCAGCGTAA
ATCGGTTTCTCTACAAGGCAGCCGTAAATGAGGGCGTATGGCAGGCGGCA
AGAGACCGTCTTTGGGAGGGAAAAGTCCACGTGCCACCAAGTGCTAAGAT
GATGACCCCAAAAGCGGGCTACATCGCTAGCTTGCAAGACTCAAAACGGA
CATGGCTCGGCCTAGACGAGCTAACGTCTTTTAGCTGGTGGTTTCGTTTC
AAGCAGCAAGCGGGGGAAGCTTGGACGGCCCAGGACCCATGGTACAGAAA
CGAGAAGGTGAGACAATGCCGCAACCACACCGTGCTTTCCCTTGCCCAGG
GGCTCGGACTCGAATTTGTGCCTCTAGGAGCTCTGCATTTCCTTGACGGG
CCGGATATAGCTCGTTGCGGCAGCGTAAATCGGTTTCTCTACAAGGCAGC
CGTAAATGAGGGCGTATGGCAGGCGGCAAGAGACCGTCTTTGGGAGGGAA
AAGTCCACGTGCCACCAAGTGCTAAGATGATGACCCCAAAAGCGGGCTAC
ATCGCTAGCTTGCAAGACTCAAAACGGACATGGCTCGGCCTAGACGAGCT
AACGTCTTTTAGCTGGTGGTTTCGTTTCAAGCAGCAAGCGGGGGAAGCTT
GGACGGCCCAGGACCCATGGTACAGAAACGAGAAGGTGAGACAATGCCGC
AACCAC
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