mRNA_H-elongata_contig129680.2166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129680.2166.1
Unique NamemRNA_H-elongata_contig129680.2166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: D7G278_ECTSI (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G278_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.600e-42
Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = 1
Query:   97 ITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFFGTGK 387
            +T + V+S+AVLFGLNNTR+VKDERHARLV LVRDRP GEPLLTVANHASTLDDP++ AV++PWD+V+R +LMRW+ CSQEIC     +++FFG GK
Sbjct:    1 MTPVAVLSRAVLFGLNNTRLVKDERHARLVDLVRDRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPRLMRWSVCSQEICFETRAIASFFGAGK 97          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A7S2S0C2_9STRA (Tafazzin family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0C2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.830e-19
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   46 DALEADPLLLQGARGALITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFFGTGK 387
            D     P+LL   R  + T IG +SK  L  +N   V  +     LV  V  RP   PL+TVANHAS LDDP+L A M+PW +VL+    RW  C+QE+C     ++AF G GK
Sbjct:   66 DVASPPPVLLAATRAVVTTAIGALSKIWLTWMNRMSV--EGELGTLVEAVEGRPEDTPLITVANHASVLDDPALLAAMLPWRIVLQPSKHRWAICTQEVCFKDDLIAAFVGCGK 177          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A7S2NY36_9STRA (Tafazzin family protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY36_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.340e-15
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   79 GARGALITTIGVISKAVLFGLN--NT-RVVKDERHARLVGLVRDRP----LGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFFGTGK 387
            G R + +  + VI+  +  G+N  NT  ++KD+ +  L+  +R         + ++TV+NH ST+DDP LF +++PWD+ LR   +RWT CSQEIC     ++A FG GK
Sbjct:  100 GFRISQMIALNVINFVIHVGMNYYNTFTLLKDDHYDFLIQTIRQETNNPGSNKAVITVSNHNSTIDDPVLFGLLLPWDLKLRPMKIRWTLCSQEICFKNPAIAAMFGAGK 209          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A7S0F2K9_9CRYP (Tafazzin family protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F2K9_9CRYP)

HSP 1 Score: 77.8 bits (190), Expect = 2.840e-14
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   37 LSDDALEADPLLLQGARGALITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGV-SAFFGTGK 387
            L D   E  P  L  ARG +   +  I K ++   N   VV+DE +A L+  +R R  G  LLT +NHAS+LDDP L + ++P+DV L  K MRW+  +QEI      V  AF G G+
Sbjct:   60 LRDLPAEYVPFGLLVARGIIQFLVVSIFKFIVGFRNTVEVVQDENYAYLLRQMRSREDGVSLLTASNHASSLDDPGLISCLIPYDVALSPKRMRWSLATQEIAFPNIPVVQAFMGAGQ 177          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: L1IP40_GUITC (Tafazzin family protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IP40_GUITC)

HSP 1 Score: 77.0 bits (188), Expect = 3.360e-14
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   64 PLLLQGARGALITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAG-VSAFFGTGK 387
            PL L  ARG +   +  I K ++   N   VVKDE ++ L+  +R R  G  LLT +NHAS+LDDP L + ++P DV +  K MRW+  +QEI       V AF G G+
Sbjct:   17 PLGLLVARGIIQFLVVSIFKFIVGVRNTVEVVKDENYSYLMQQMRSRQEGVSLLTASNHASSLDDPGLLSCLIPMDVAMSPKRMRWSLATQEIAFPNIPLVQAFMGAGQ 125          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A7S4NET4_GUITH (Tafazzin family protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NET4_GUITH)

HSP 1 Score: 77.0 bits (188), Expect = 5.520e-14
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   64 PLLLQGARGALITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAG-VSAFFGTGK 387
            PL L  ARG +   +  I K ++   N   VVKDE ++ L+  +R R  G  LLT +NHAS+LDDP L + ++P DV +  K MRW+  +QEI       V AF G G+
Sbjct:   69 PLGLLVARGIIQFLVVSIFKFIVGVRNTVEVVKDENYSYLMQQMRSRQEGVSLLTASNHASSLDDPGLLSCLIPMDVAMSPKRMRWSLATQEIAFPNIPLVQAFMGAGQ 177          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A0G4IJ85_PLABS (Tafazzin family protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJ85_PLABS)

HSP 1 Score: 75.9 bits (185), Expect = 6.950e-14
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   55 EADPLLLQGA-RGALITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFFGTGK 387
            + D  LLQ   +      +G +S+A+LFGLN+TRV   ++  R +    +R + +P++TV NH ST+DDP L A + P  V+       W+ C+ EIC   +  SAFFG  K
Sbjct:   23 DVDRSLLQDLFQSIFFVGVGAVSRALLFGLNDTRVYNGDQFVRHI---TERSVRQPMITVMNHNSTIDDPVLLAAIAPVAVLRDPDRCNWSWCASEICFKNSLCSAFFGNCK 131          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A4P1QU99_LUPAN (Tafazzin family protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A4P1QU99_LUPAN)

HSP 1 Score: 74.7 bits (182), Expect = 4.190e-13
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   25 RQQNLSDDALEADPLLLQGARGALITTIGVISKAVLFGLNNTRVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFF 375
            R++   D + E D  LL+  +   +  IG +    + GLN  +V   E+   L   + +RP G+PLLTV+NH +++DDP + A ++P  V++  K +RWT C+ + C      SAFF
Sbjct:   75 RKRVTKDFSSEEDSTLLRMMQAVAVPVIGNVCHVFMNGLNRVQVYGLEK---LQSALLERPKGKPLLTVSNHVASMDDPLVIASLLPPQVLMDAKNLRWTLCATDRCFKNPVTSAFF 188          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A6A5P9A6_LUPAL (PlsC domain-containing protein n=3 Tax=Lupinus TaxID=3869 RepID=A0A6A5P9A6_LUPAL)

HSP 1 Score: 74.7 bits (182), Expect = 4.390e-13
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   25 RQQNLSDDALEADPLLLQGARGALITTIGVISKAVLFGLNNTRVVKDER-HARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFF 375
            R++   D + E D  LL+  +   +  IG +    + GLN  +V   E+ H+ L+    +RP G+PLLTV+NH +++DDP + A ++P  V++  K +RWT C+ + C      SAFF
Sbjct:   78 RKRVTKDFSSEEDSTLLRMMQAVAVPVIGNVCHVFMNGLNRVQVYGLEKLHSALL----ERPRGKPLLTVSNHVASMDDPLVIASLLPPQVLMDAKNLRWTICATDRCFKNPVTSAFF 191          
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Match: A0A1S2XU80_CICAR (Tafazzin family protein n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XU80_CICAR)

HSP 1 Score: 70.1 bits (170), Expect = 1.750e-11
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   25 RQQNLSDDALEADPLLLQGARGALITTIGVISKAVLFGLNNTRVVKDER-HARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVLRQKLMRWTACSQEICSGRAGVSAFF 375
            R++   D + E +  +L+  +   +  +G +    + GLN  +V   E+ H+ L+     RP G+PLLTV+NH +++DDP + A ++P  V+L  + +RWT C+ + C      SAFF
Sbjct:   76 RKRVTRDFSSEEESTILRMMQAVAVPIVGNVCHVFMNGLNRVQVYGLEKLHSALL----QRPKGKPLLTVSNHVASMDDPLVIASLLPPQVLLDARNLRWTLCATDRCFKNPVTSAFF 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129680.2166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G278_ECTSI1.600e-4270.10Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S0C2_9STRA1.830e-1942.98Tafazzin family protein n=1 Tax=Rhizochromulina ma... [more]
A0A7S2NY36_9STRA4.340e-1538.18Tafazzin family protein n=1 Tax=Leptocylindrus dan... [more]
A0A7S0F2K9_9CRYP2.840e-1440.68Tafazzin family protein (Fragment) n=1 Tax=Hanusia... [more]
L1IP40_GUITC3.360e-1441.28Tafazzin family protein n=1 Tax=Guillardia theta (... [more]
A0A7S4NET4_GUITH5.520e-1441.28Tafazzin family protein n=1 Tax=Guillardia theta T... [more]
A0A0G4IJ85_PLABS6.950e-1437.50Tafazzin family protein n=1 Tax=Plasmodiophora bra... [more]
A0A4P1QU99_LUPAN4.190e-1334.19Tafazzin family protein n=2 Tax=Lupinus TaxID=3869... [more]
A0A6A5P9A6_LUPAL4.390e-1334.75PlsC domain-containing protein n=3 Tax=Lupinus Tax... [more]
A0A1S2XU80_CICAR1.750e-1132.20Tafazzin family protein n=1 Tax=Cicer arietinum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129680contigH-elongata_contig129680:348..1353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.7e-34
Seed eggNOG ortholog2880.D7G278
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.6970263-CDS-H-elongata_contig129680:347..5311622929770.6970263-CDS-H-elongata_contig129680:347..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129680 348..531 -
1691679151.2400374-CDS-H-elongata_contig129680:347..5311691679151.2400374-CDS-H-elongata_contig129680:347..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129680 348..531 -
1622929770.712703-CDS-H-elongata_contig129680:1150..13531622929770.712703-CDS-H-elongata_contig129680:1150..1353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129680 1151..1353 -
1691679151.2514307-CDS-H-elongata_contig129680:1150..13531691679151.2514307-CDS-H-elongata_contig129680:1150..1353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129680 1151..1353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129680.2166.1prot_H-elongata_contig129680.2166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129680 348..1353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129680.2166.1

>prot_H-elongata_contig129680.2166.1 ID=prot_H-elongata_contig129680.2166.1|Name=mRNA_H-elongata_contig129680.2166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MTLFFARARQQNLSDDALEADPLLLQGARGALITTIGVISKAVLFGLNNT
RVVKDERHARLVGLVRDRPLGEPLLTVANHASTLDDPSLFAVMMPWDVVL
RQKLMRWTACSQEICSGRAGVSAFFGTGK
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mRNA from alignment at H-elongata_contig129680:348..1353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129680.2166.1 ID=mRNA_H-elongata_contig129680.2166.1|Name=mRNA_H-elongata_contig129680.2166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1006bp|location=Sequence derived from alignment at H-elongata_contig129680:348..1353- (Himanthalia elongata Himel1 dioecious)
ATGACACTTTTTTTTGCGCGTGCGCGGCAGCAGAATCTGTCTGATGACGC TCTCGAGGCAGATCCATTGCTGCTGCAGGGTGCGAGGGGCGCGTTGATCA CGACGATAGGGGTCATCAGCAAGGCTGTGCTCTTTGGCCTGAACAACACG CGCGTGGTGAAGGACGAGAGGCACGCGAGGCTTGTGGGGCTTGTCCGCGA TAGGTTTGTGATTATGTATGTGTGTGTGTTTGTGTGCAGTTGGGCGCCGA CGGGGCTAGTGGTCGTTCACTCGGGACGCGGCTTAGGTGTCCTAGATAAT TATATAGCACCGTCGTTTCATAGCTTCAGCATGCCACTACACTGTGGCTG CTGGTGTTGCTGCTGCTGTTCCTACTTCTGTTCTTGTGGTTATGATGGCA TGTTTTATAAAAAGGCGGCAGCGTAGGGCATGGCATCGTGTCTCTTCGGT GCCACACACGTCGTTGCGGAGAGAGACAGGCCGTCAGTCGGCGATTGGTT CCAATCCTTTCTGTGCGATCAAATCCAAAATAGCAACATAGATAACCTAA AATAAATAAAAACAGAGCGATCGCTTTTTTTGCAAGCAATCGGCTCGCGC TCCCGCGCGCTTTCACCATGATCTTGGCGGCCTTCGCGGCATCTGGCCCG AAAAAATCGCCTTTACGCTATGCGCGCTTAAATAAATTCGTTATTAATCC ACGATAAAATCATCCTCCGTCCCCCCATCCCATCCCATCCCTAGATTACA CGATACCCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCATTTCTCCCTCAC ACTCAAAAACCGCCTGCTACAGGCCGCTAGGTGAGCCACTCCTGACCGTC GCGAACCACGCCAGCACGCTCGACGACCCCTCGCTGTTCGCGGTGATGAT GCCCTGGGACGTGGTGTTGCGTCAGAAACTCATGCGGTGGACGGCCTGCA GCCAGGAGATCTGCTCCGGGAGGGCGGGGGTTTCCGCCTTCTTCGGAACG GGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig129680:348..1353-

>mRNA_H-elongata_contig129680.2166.1 ID=mRNA_H-elongata_contig129680.2166.1|Name=mRNA_H-elongata_contig129680.2166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig129680:348..1353- (Himanthalia elongata Himel1 dioecious)
ATGACACTTTTTTTTGCGCGTGCGCGGCAGCAGAATCTGTCTGATGACGC
TCTCGAGGCAGATCCATTGCTGCTGCAGGGTGCGAGGGGCGCGTTGATCA
CGACGATAGGGGTCATCAGCAAGGCTGTGCTCTTTGGCCTGAACAACACG
CGCGTGGTGAAGGACGAGAGGCACGCGAGGCTTGTGGGGCTTGTCCGCGA
TAGATGACACTTTTTTTTGCGCGTGCGCGGCAGCAGAATCTGTCTGATGA
CGCTCTCGAGGCAGATCCATTGCTGCTGCAGGGTGCGAGGGGCGCGTTGA
TCACGACGATAGGGGTCATCAGCAAGGCTGTGCTCTTTGGCCTGAACAAC
ACGCGCGTGGTGAAGGACGAGAGGCACGCGAGGCTTGTGGGGCTTGTCCG
CGATAGGCCGCTAGGTGAGCCACTCCTGACCGTCGCGAACCACGCCAGCA
CGCTCGACGACCCCTCGCTGTTCGCGGTGATGATGCCCTGGGACGTGGTG
TTGCGTCAGAAACTCATGCGGTGGACGGCCTGCAGCCAGGAGATCTGCTC
CGGGAGGGCGGGGGTTTCCGCCTTCTTCGGAACGGGAAAAGCCGCTAGGT
GAGCCACTCCTGACCGTCGCGAACCACGCCAGCACGCTCGACGACCCCTC
GCTGTTCGCGGTGATGATGCCCTGGGACGTGGTGTTGCGTCAGAAACTCA
TGCGGTGGACGGCCTGCAGCCAGGAGATCTGCTCCGGGAGGGCGGGGGTT
TCCGCCTTCTTCGGAACGGGAAAA
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