mRNA_H-elongata_contig129635.2165.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129635.2165.1
Unique NamemRNA_H-elongata_contig129635.2165.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 4.590e-45
Identity = 78/88 (88.64%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR 264
            +VDLG+K+ALYDTPGLL+PHTLTSRLNA+ELRAAIPKKKVDHVTFR+GEGKVVL+GGLARVEV+ GRPFLLTFFVSNDVRLHPTDA R
Sbjct:  539 KVDLGDKRALYDTPGLLLPHTLTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARR 626          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 9.570e-31
Identity = 54/88 (61.36%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR 264
            +VDLG+K +LYDTPGL++PH +T+ LN +EL+A IP+K+++HVT RL EGK VLLGGL R+++L+GRPFL TF+VSN+V+LH T   R
Sbjct:  664 EVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDR 751          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.230e-30
Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR 264
            +V++G    LYDTPGL++PH LTSRL  +EL++ IP K V+HVT RL EGK VL+GGLAR+E++ G+PFL TFFVSN+V+LH TDA+R
Sbjct:  328 RVNMGGDVCLYDTPGLILPHQLTSRLTPEELKSVIPAKAVEHVTLRLTEGKAVLVGGLARIELVSGKPFLFTFFVSNEVKLHMTDAAR 415          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A1E7F2J8_9STRA (G domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2J8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.410e-29
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
            ++DLG+ + +YDTPGLL+P T+T  L  +ELR   PKKKV+ +TFR+  GK VL+GGLA++EV+   +PFLLTFFV+ND++LHPTD+SR
Sbjct:  101 KIDLGDGQNIYDTPGLLVPGTITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSR 189          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.210e-28
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQ-GRPFLLTFFVSNDVRLHPTDASR 264
            +VDLG  + +YDTPGL++P TLTSRL   EL+  +PKK V+ V+FR+G GK VL+GGLAR+EV    +PFL TFFVSND++LHPTDAS+
Sbjct:  428 KVDLGNGRKMYDTPGLIVPGTLTSRLTPAELKMVVPKKPVEAVSFRVGPGKCVLIGGLARIEVASDSKPFLFTFFVSNDIKLHPTDASK 516          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S2W145_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W145_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.810e-28
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQ-GRPFLLTFFVSNDVRLHPTDASR 264
            + DLG+ ++LYDTPGLL+P TLT  L   EL+  +PK+KV+ +TFR+G GK VL+GGLAR+EV +  +PFL TFFVSN+++LHPT   +
Sbjct:    1 KADLGDGRSLYDTPGLLVPGTLTQLLTPAELKMVVPKRKVEPITFRVGPGKCVLIGGLARIEVSEDSKPFLFTFFVSNEIKLHPTKTDK 89          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7R9WQ60_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ60_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.160e-27
Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQG-RPFLLTFFVSNDVRLHPTDASR 264
            ++DLG+ + LYDTPGLL+P T+T  L  +EL+   PKK+V+ +TFR+  GK +++GGLARVEV    +PFLLTFFV+ND++LHPT + +
Sbjct:   31 KIDLGDGRTLYDTPGLLVPGTITQLLTGEELKVVCPKKQVEPITFRVSSGKCIMIGGLARVEVFGDCKPFLLTFFVANDIKLHPTASDK 119          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.890e-27
Identity = 49/89 (55.06%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
            +++LG+ +AL+DTPGLL+P  LT RL  +EL+  +PKK+V+ +TFR+  GK VL+GGLA+VE++   +PFL TFFV+ND++LHPTD+ R
Sbjct:  236 RIELGKGRALFDTPGLLVPGCLTERLTPEELKIVVPKKRVEPITFRVASGKCVLVGGLAKVELIGDSKPFLFTFFVANDIKLHPTDSER 324          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S4R4B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4B4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.070e-26
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
            QVDLG  + LYDTPGLL+P TLT  L   EL+  +PKK+V+ +T R+  GK V +GGLAR+EV+   +PFL TFFVSND++LHPTD SR
Sbjct:  583 QVDLGNGQKLYDTPGLLVPGTLTQLLTPAELKMVVPKKEVEPITLRIASGKCVQVGGLARIEVIGDSKPFLFTFFVSNDIKLHPTDTSR 671          
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.630e-26
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
            +VDLG    LYDTPGLL+P T+T RL   EL+  +PKK+V+ VTFR+  GK VL+GGLAR+EV    +PFL TFFV+ND++LHPTD  +
Sbjct:  469 KVDLGNGVKLYDTPGLLVPGTMTQRLTPAELKIVVPKKEVEPVTFRVASGKCVLVGGLARIEVTGNSKPFLFTFFVANDIKLHPTDVKK 557          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR2_ECTSI4.590e-4588.64Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ec... [more]
A0A4D9D9J5_9STRA9.570e-3161.36G domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A835YJZ8_9STRA2.230e-3062.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1E7F2J8_9STRA1.410e-2958.43G domain-containing protein n=1 Tax=Fragilariopsis... [more]
A0A7S2LG86_9STRA1.210e-2861.80Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2W145_9STRA3.810e-2856.18Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9WQ60_9STRA3.160e-2753.93Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2LA52_9STRA3.890e-2755.06Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4R4B4_9STRA1.070e-2659.55Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4NA62_9STRA2.630e-2658.43Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129635contigH-elongata_contig129635:101..696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue3.9e-38
Seed eggNOG ortholog2880.D8LQR2
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG1249@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.6316042-CDS-H-elongata_contig129635:100..2471622929770.6316042-CDS-H-elongata_contig129635:100..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129635 101..247 -
1691679151.215245-CDS-H-elongata_contig129635:100..2471691679151.215245-CDS-H-elongata_contig129635:100..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129635 101..247 -
1622929770.6473641-CDS-H-elongata_contig129635:579..6961622929770.6473641-CDS-H-elongata_contig129635:579..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129635 580..696 -
1691679151.224471-CDS-H-elongata_contig129635:579..6961691679151.224471-CDS-H-elongata_contig129635:579..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129635 580..696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129635.2165.1prot_H-elongata_contig129635.2165.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129635 101..696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129635.2165.1

>prot_H-elongata_contig129635.2165.1 ID=prot_H-elongata_contig129635.2165.1|Name=mRNA_H-elongata_contig129635.2165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEG
KVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR
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mRNA from alignment at H-elongata_contig129635:101..696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129635.2165.1 ID=mRNA_H-elongata_contig129635.2165.1|Name=mRNA_H-elongata_contig129635.2165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at H-elongata_contig129635:101..696- (Himanthalia elongata Himel1 dioecious)
CAGGTGGATCTTGGCGAGAAAAAGGCGCTGTACGATACACCGGGACTCCT GATGCCACACACGCTGACGTCACGCCTCAACGCCGACGAGCTAAGGGCCG CGATACCGAAAAAAAAAGTAAGACCAAATATAAATATAAATATATTACTG TAACAGCCTAGAGCCTATAGACTAAAGCTTCTCACTTTCCAAGGAAACCC CTACCTCACGGGACGTCACCAAAACATGCAGAAGATATAATAAAACCCCT TCTGGTAGTTAGCCCCCCCCCCTCCCCCCCTCATATCTATATGTTCATTT AAATATGGTATATTTAAAATAGCAAGGTATGGTTGAGCATAGTAGAGTAG AGTAGAGTACAATCACACGAAGATAGACTAAGGCCGACGCTTGCACGCTC GGCTGGTGTGTCTTTGACTGGCCGTGGTTCGGCAACCATCGACAACCAGG TGGACCATGTGACGTTCCGCCTCGGGGAGGGAAAGGTAGTGCTCCTGGGA GGGCTGGCGAGGGTGGAGGTGCTCCAAGGCCGGCCTTTCTTGCTGACATT TTTCGTGTCCAACGACGTCCGCCTCCACCCCACGGATGCCAGCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig129635:101..696-

>mRNA_H-elongata_contig129635.2165.1 ID=mRNA_H-elongata_contig129635.2165.1|Name=mRNA_H-elongata_contig129635.2165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig129635:101..696- (Himanthalia elongata Himel1 dioecious)
CAGGTGGATCTTGGCGAGAAAAAGGCGCTGTACGATACACCGGGACTCCT
GATGCCACACACGCTGACGTCACGCCTCAACGCCGACGAGCTAAGGGCCG
CGATACCGAAAAAAAAACAGGTGGATCTTGGCGAGAAAAAGGCGCTGTAC
GATACACCGGGACTCCTGATGCCACACACGCTGACGTCACGCCTCAACGC
CGACGAGCTAAGGGCCGCGATACCGAAAAAAAAAGTGGACCATGTGACGT
TCCGCCTCGGGGAGGGAAAGGTAGTGCTCCTGGGAGGGCTGGCGAGGGTG
GAGGTGCTCCAAGGCCGGCCTTTCTTGCTGACATTTTTCGTGTCCAACGA
CGTCCGCCTCCACCCCACGGATGCCAGCAGGGTGGACCATGTGACGTTCC
GCCTCGGGGAGGGAAAGGTAGTGCTCCTGGGAGGGCTGGCGAGGGTGGAG
GTGCTCCAAGGCCGGCCTTTCTTGCTGACATTTTTCGTGTCCAACGACGT
CCGCCTCCACCCCACGGATGCCAGCAGG
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