mRNA_H-elongata_contig129625.2164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129625.2164.1
Unique NamemRNA_H-elongata_contig129625.2164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig129625.2164.1 vs. uniprot
Match: D8LGL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.760e-21
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 FTLLDKEVSLDSVESTLWSLENDTETEDEIMEGDPLDLGEIAAQAVALCIDPFAKRPKAAGGADEG-GTGEG 213
            F+   +EVSLDSV+STLW+LE DTET+DEIMEGDPLDLGE+AAQ +ALCIDP+AK P     +D G G GEG
Sbjct:  217 FSTAIQEVSLDSVQSTLWALEEDTETDDEIMEGDPLDLGEVAAQGLALCIDPYAKHPDFVASSDAGSGNGEG 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129625.2164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGL4_ECTSI2.760e-2168.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129625contigH-elongata_contig129625:1614..1826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF177
Ec32 orthologEc-10_002650.1
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.5860038-CDS-H-elongata_contig129625:1613..18261622929770.5860038-CDS-H-elongata_contig129625:1613..1826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129625 1614..1826 -
1691679151.2045598-CDS-H-elongata_contig129625:1613..18261691679151.2045598-CDS-H-elongata_contig129625:1613..1826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129625 1614..1826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129625.2164.1prot_H-elongata_contig129625.2164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129625 1614..1826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129625.2164.1

>prot_H-elongata_contig129625.2164.1 ID=prot_H-elongata_contig129625.2164.1|Name=mRNA_H-elongata_contig129625.2164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
FTLLDKEVSLDSVESTLWSLENDTETEDEIMEGDPLDLGEIAAQAVALCI
DPFAKRPKAAGGADEGGTGEG
back to top

mRNA from alignment at H-elongata_contig129625:1614..1826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129625.2164.1 ID=mRNA_H-elongata_contig129625.2164.1|Name=mRNA_H-elongata_contig129625.2164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig129625:1614..1826- (Himanthalia elongata Himel1 dioecious)
TTTACTCTCCTTGATAAGGAGGTCAGCCTAGATAGCGTGGAGTCGACCCT
GTGGTCACTGGAGAATGACACGGAGACGGAGGACGAGATCATGGAGGGGG
ATCCTCTGGACCTAGGAGAGATCGCGGCTCAGGCGGTTGCGCTCTGCATC
GACCCCTTCGCAAAGCGCCCGAAGGCTGCAGGGGGCGCTGACGAGGGAGG
CACGGGCGAAGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig129625:1614..1826-

>mRNA_H-elongata_contig129625.2164.1 ID=mRNA_H-elongata_contig129625.2164.1|Name=mRNA_H-elongata_contig129625.2164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig129625:1614..1826- (Himanthalia elongata Himel1 dioecious)
TTTACTCTCCTTGATAAGGAGGTCAGCCTAGATAGCGTGGAGTCGACCCT
GTGGTCACTGGAGAATGACACGGAGACGGAGGACGAGATCATGGAGGGGG
ATCCTCTGGACCTAGGAGAGATCGCGGCTCAGGCGGTTGCGCTCTGCATC
GACCCCTTCGCAAAGCGCCCGAAGGCTGCAGGGGGCGCTGACGAGGGAGG
CACGGGCGAAGGATTTACTCTCCTTGATAAGGAGGTCAGCCTAGATAGCG
TGGAGTCGACCCTGTGGTCACTGGAGAATGACACGGAGACGGAGGACGAG
ATCATGGAGGGGGATCCTCTGGACCTAGGAGAGATCGCGGCTCAGGCGGT
TGCGCTCTGCATCGACCCCTTCGCAAAGCGCCCGAAGGCTGCAGGGGGCG
CTGACGAGGGAGGCACGGGCGAAGGA
back to top