mRNA_H-elongata_contig129407.2153.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129407.2153.1
Unique NamemRNA_H-elongata_contig129407.2153.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129407.2153.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.120e-19
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    4 VMSAVFASKRSDATTIIGDSGASRHTFCDGTHVRNKRSPGPGEAYLVIGDGTQIPVKCYGDLDMVLRCEKDGKPWSNVEVTLKNIAVVPNLWFDLISFNQI 306
            ++S++F  +R  +T  IGDS ++ H   DGTHV N R P   E +L IGDG ++  +C+G LD+V  C +D      V VT+K+IAVVP+L FDL+S N I
Sbjct:    1 MLSSIFPRRRPGSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCRED------VLVTMKDIAVVPDLAFDLVSLNVI 95
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BLAST of mRNA_H-elongata_contig129407.2153.1 vs. uniprot
Match: A0A6H5LQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQP2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.820e-10
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   31 RSDATTIIGDSGASRHTFCDGTHVRNKRSPGPGEAYLVIGDGTQIPVKCYGDLDMVLRCEKDGKPWSNVEVTLKNIAVVPNLWF-----------DLISFNQI 306
            R  AT  +G + A  H       V N+R P P E  L++ DG ++PVK +GDLD+V  C++D      V VTL  ++VVP L             DL+SF++I
Sbjct:    8 RPGATVFLGHTSAKIHVARSEDKVDNRRLPRPQEQLLMLSDGRRVPVKLFGDLDVVFHCQRD------VCVTLTGVSVVPGLVLMGVGALPGLALDLLSFSRI 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129407.2153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE5.120e-1945.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LQP2_9PHAE7.820e-1036.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129407contigH-elongata_contig129407:292..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.287121-CDS-H-elongata_contig129407:291..5911622929769.287121-CDS-H-elongata_contig129407:291..591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129407 292..591 -
1691679150.7323265-CDS-H-elongata_contig129407:291..5911691679150.7323265-CDS-H-elongata_contig129407:291..591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129407 292..591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.3080506-UTR-H-elongata_contig129407:591..5971622929769.3080506-UTR-H-elongata_contig129407:591..597Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129407 592..597 -
1691679150.7396188-UTR-H-elongata_contig129407:591..5971691679150.7396188-UTR-H-elongata_contig129407:591..597Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129407 592..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129407.2153.1prot_H-elongata_contig129407.2153.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129407 292..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129407.2153.1

>prot_H-elongata_contig129407.2153.1 ID=prot_H-elongata_contig129407.2153.1|Name=mRNA_H-elongata_contig129407.2153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MSAVFASKRSDATTIIGDSGASRHTFCDGTHVRNKRSPGPGEAYLVIGDG
TQIPVKCYGDLDMVLRCEKDGKPWSNVEVTLKNIAVVPNLWFDLISFNQI
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mRNA from alignment at H-elongata_contig129407:292..597-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129407.2153.1 ID=mRNA_H-elongata_contig129407.2153.1|Name=mRNA_H-elongata_contig129407.2153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig129407:292..597- (Himanthalia elongata Himel1 dioecious)
CACGTCATGTCTGCAGTTTTCGCGTCAAAACGTTCTGACGCTACAACCAT
AATCGGGGACAGTGGTGCCTCGAGGCACACGTTTTGTGACGGCACCCATG
TGCGCAACAAGCGCTCACCAGGCCCGGGAGAAGCGTACCTAGTCATCGGC
GACGGGACCCAGATACCGGTGAAGTGCTATGGAGATCTCGACATGGTTCT
CCGCTGCGAGAAAGACGGAAAACCATGGAGCAACGTTGAGGTGACGTTGA
AAAATATTGCCGTGGTACCTAACCTCTGGTTCGACCTCATATCTTTCAAT
CAGATC
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Coding sequence (CDS) from alignment at H-elongata_contig129407:292..597-

>mRNA_H-elongata_contig129407.2153.1 ID=mRNA_H-elongata_contig129407.2153.1|Name=mRNA_H-elongata_contig129407.2153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig129407:292..597- (Himanthalia elongata Himel1 dioecious)
ATGTCTGCAGTTTTCGCGTCAAAACGTTCTGACGCTACAACCATAATCGG
GGACAGTGGTGCCTCGAGGCACACGTTTTGTGACGGCACCCATGTGCGCA
ACAAGCGCTCACCAGGCCCGGGAGAAGCGTACCTAGTCATCGGCGACGGG
ACCCAGATACCGGTGAAGTGCTATGGAGATCTCGACATGGTTCTCCGCTG
CGAGAAAGACGGAAAACCATGGAGCAACGTTGAGGTGACGTTGAAAAATA
TTGCCGTGGTACCTAACCTCTGGTTCGACCTCATATCTTTCAATCAGATC
ATGTCTGCAGTTTTCGCGTCAAAACGTTCTGACGCTACAACCATAATCGG
GGACAGTGGTGCCTCGAGGCACACGTTTTGTGACGGCACCCATGTGCGCA
ACAAGCGCTCACCAGGCCCGGGAGAAGCGTACCTAGTCATCGGCGACGGG
ACCCAGATACCGGTGAAGTGCTATGGAGATCTCGACATGGTTCTCCGCTG
CGAGAAAGACGGAAAACCATGGAGCAACGTTGAGGTGACGTTGAAAAATA
TTGCCGTGGTACCTAACCTCTGGTTCGACCTCATATCTTTCAATCAGATC
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