mRNA_H-elongata_contig129373.2150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129373.2150.1
Unique NamemRNA_H-elongata_contig129373.2150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A6H5JIC4_9PHAE (Ribos_L4_asso_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIC4_9PHAE)

HSP 1 Score: 578 bits (1489), Expect = 8.540e-206
Identity = 290/355 (81.69%), Postives = 319/355 (89.86%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLNLHHEARLKTQADYQDAQRAVRKAILKERRARKSEGKKFYLKANLEGDVKF 1065
            VFTVPIRPD+VNFVHTN+AKNHR PYAVSKRAGHQTSAESWGTGRAVS IPRVQGGGTQRAGQGAFGNMCRGGRMF+PTKIWRRWHRHVNVNQKRYAVASALAATAVP LVMARGHRVEEVPELPLVVD SLE+C+K  +ALA L ALGA AEVEKVKDSKKIR GKGKMRNRRYVMRRGPLVIY+KSEGI +AFRNLPGVET CVD LNLLTLAPGGH+GRFC+WT+AAFDKLDSI+G YT+KS +K+ +QLPRHCMTNTDLNRIINSDEIQSVV  PKP+ Q R+VARKVN L+NR VM+ LN +H+AR+  Q   Q+A +A RKA+LKERR RK+  + F+ KANLEGDVKF
Sbjct:   25 VFTVPIRPDVVNFVHTNMAKNHRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVQGGGTQRAGQGAFGNMCRGGRMFSPTKIWRRWHRHVNVNQKRYAVASALAATAVPALVMARGHRVEEVPELPLVVDTSLETCSKTAAALATLTALGAAAEVEKVKDSKKIRAGKGKMRNRRYVMRRGPLVIYDKSEGISRAFRNLPGVETACVDRLNLLTLAPGGHMGRFCVWTQAAFDKLDSIYGTYTEKSDVKSNFQLPRHCMTNTDLNRIINSDEIQSVVNDPKPEAQVRRVARKVNPLKNRGVMLSLNPYHDARIAAQQAQQEANKAGRKAVLKERRGRKTARRAFHAKANLEGDVKF 379
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A836CFT4_9STRA (Ribosomal protein L4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT4_9STRA)

HSP 1 Score: 459 bits (1180), Expect = 1.260e-158
Identity = 239/366 (65.30%), Postives = 284/366 (77.60%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLNLH-----------HEARLKTQADYQDAQRAVRKAILKERRARKSEGKKFYLKANLEGDVKF 1065
            V T PIRPDIVNFVHTN+AKN R  YAVSK+AGHQTSAESWGTGRAVS IPRV GGGTQR+GQGAFGNMCRGGRMFAPTKIWRRWHR +NVNQKRYAVASALAA+AVP LVMARGH+V EVPELPLVVDNSL+S  K   A+  L  LGA A+V+K K+SKKIR GKGKMRNRRYV+RRGPLVIY +S+G+ KAFRNL GVET CVD LNLL LAPGGH+GRFC+WT+AAF++LD+++G Y +K   K+GY LPR  MTN D+ RIINS E+QSV+R  +P+ Q+  + RK N+L+N  V+ RL+ +            E R   +A+    +RA  KA    ++A K++G+ FY  AN EG VKF
Sbjct:   26 VMTAPIRPDIVNFVHTNMAKNSRQAYAVSKKAGHQTSAESWGTGRAVSRIPRVGGGGTQRSGQGAFGNMCRGGRMFAPTKIWRRWHRRINVNQKRYAVASALAASAVPALVMARGHKVHEVPELPLVVDNSLQSLKKTSDAIKALAKLGAAADVDKAKNSKKIRAGKGKMRNRRYVLRRGPLVIYAESDGLQKAFRNLAGVETACVDRLNLLQLAPGGHMGRFCVWTQAAFERLDAVYGTYAEKGA-KSGYTLPRQQMTNADVARIINSTEVQSVLRAARPEAQRHMLPRKKNALKNLGVLERLSPYAAHARKAATKAQEERKGKRAELLATKRAAAKAQRPAKKALKAQGRAFYEAANQEGSVKF 390
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A7S2UWI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWI4_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 3.600e-152
Identity = 237/366 (64.75%), Postives = 284/366 (77.60%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSE--GIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLNLHHEARLKTQADYQDAQR--------AVRKAILKER---RARKSEGKKFYLKANLEGDV 1059
            V T PIRPDIV FVHTN+AKN+R PYAVSK+AGHQTSAESWGTGRAVS IPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHR+VNVNQ+RYAVASALAA+A+P LVMARGH+++EVPELPLVVD   ++  K   A  +L  LGA A+++K+K +KK+R GKGK+RNRR+V RRGPLV+Y+ SE   I  A RNLPGVE   VD LNLLTLAPGGH+GRF +WT+AAFDKLD+++G Y  KS +K GY LPRH M N DL+R+INSDEIQSVVR P   + KR V RK N L+N  VM R+N +  A  +++   Q+A++        A R+  LK++   +A K+E K FY KAN EGDV
Sbjct:   30 VMTAPIRPDIVQFVHTNLAKNNRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRNVNVNQRRYAVASALAASALPALVMARGHKIDEVPELPLVVDTDAQALKKTAKARKLLETLGAKADLDKIKATKKLRAGKGKLRNRRFVQRRGPLVVYDASEEGSIALAVRNLPGVECARVDSLNLLTLAPGGHMGRFIVWTQAAFDKLDALYGTYDAKSSMKKGYSLPRHVMANADLSRLINSDEIQSVVR-PAEAKSKRTVPRKKNPLKNLGVMARINPYAVAARRSEYRAQEARKTAKAEQIAAKRQMALKKKAASKAGKAERKAFYEKANKEGDV 394
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: B4FI22_MAIZE (Ribos_L4_asso_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=B4FI22_MAIZE)

HSP 1 Score: 414 bits (1063), Expect = 6.380e-141
Identity = 206/305 (67.54%), Postives = 246/305 (80.66%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLN 915
            VFT PIRPD+VNFVHTNIAKN+R  Y VS+RAGHQ SAESWGTGRAV+ IPR+ GGGT RAGQGAFGNMCRGGRMFAPT+IWRRWHR VNVNQ+R+AVASALAA+A+P LV ARGHR+E+VPE+PLV+D+++ES  K   A+ +L  +GA A+VEKVKDSKK+  G+GK RNRRY  RRGPLV+Y  + G+ KAFRN+PGVE   V+ LNLL LAPGGHLGRF IWTK+AF+KLD+I+G Y+ KS  KTGY LPRH M N +L R+INSDEIQSV+R  K    +R    K N L+N   M++LN
Sbjct:   32 VFTAPIRPDVVNFVHTNIAKNNRQAYGVSRRAGHQHSAESWGTGRAVARIPRISGGGTSRAGQGAFGNMCRGGRMFAPTRIWRRWHRKVNVNQRRFAVASALAASALPALVTARGHRIEKVPEVPLVLDDAVESVLKTAQAVKVLAKIGADADVEKVKDSKKVTTGRGKSRNRRYTTRRGPLVVYANANGLEKAFRNIPGVELANVERLNLLQLAPGGHLGRFVIWTKSAFEKLDAIYGTYSKKSTEKTGYSLPRHIMNNANLGRLINSDEIQSVIRPGKYSSFRRH--HKKNPLKNLGAMVKLN 334
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A4D9D8J9_9STRA (Ribos_L4_asso_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8J9_9STRA)

HSP 1 Score: 412 bits (1059), Expect = 2.180e-140
Identity = 224/360 (62.22%), Postives = 265/360 (73.61%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSE-GIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLN----LHHEARLKTQADYQDAQRAVRKAILKERRARKSEGKKFYLKANLEGDVKF 1065
            V T PIRPD+VNFV T + KNHR PYAVS++AGHQTSAESWGTGRAV+ IPRV GGGTQR+GQGAFGNMCR GRMFAPTKIWRRWHR +N+ QKRYAVASALAA+AVP LVMARGHRV+ V E+P V+D S     K   A+ +L ALG   E++K KDSKKIR GKGKMRNRRYV+RRGPLVIY   E G+ KA RN+ GVE   VD LNLL LAPGGHLGRFCIWT+ AF++LD++FG  T+KS++K  Y LPR  M N DL RIINS+E+QSVVR P   E  R + RK N L+N   M+R+N    +H    LK  A    A+        K  +ARK+ G+ FY +A+ EGD+KF
Sbjct:   26 VLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVR-PAVTETVR-LPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKXXXXXXXXK--KARKAAGRAFYEQASKEGDIKF 381
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A250XAY6_9CHLO (Ribos_L4_asso_C domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAY6_9CHLO)

HSP 1 Score: 412 bits (1060), Expect = 6.830e-140
Identity = 212/342 (61.99%), Postives = 260/342 (76.02%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLNLHHEARLKTQADYQDAQRAVRKAILKERRARKSEGKK 1026
            VFT PIRPD+V  +HTN+ KN R  Y+V  +AGHQT+AESWGTGRAVS IPRV GGGT RAGQGAFGNMCRGGRMFAPTK+WR+WHR VN+ QKR+AVASALAA+A+P+LV+ARGHR+E+VPE+PLV+ ++ ES  K   AL +L  +GA  +VEK +DSK +R GKGKMRNRRYV+R+GPLV++ +  GI KAFRNLPGVE   VD LNLL LAPGGH+GRFCIWTK+AF+KLD +FG YT  S +K GY+LPR  M+N+DL RIINSDEIQS VR  K    K K  +K N L+N   M++LN + +A L+ +    + + A R   L   RA KS G K
Sbjct:   47 VFTAPIRPDVVRIIHTNMNKNKRQAYSVFMKAGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRKWHRKVNLTQKRHAVASALAASALPSLVLARGHRIEQVPEVPLVLSDAAESVKKTSKALEVLKKIGAIPDVEKARDSKNLRRGKGKMRNRRYVLRKGPLVVFGEDSGISKAFRNLPGVEVTSVDRLNLLQLAPGGHVGRFCIWTKSAFEKLDKVFGTYTTASAVKKGYKLPRSIMSNSDLTRIINSDEIQSAVRPQKAAAPKHKPLKK-NPLKNLGAMLKLNPYAKAALRREVVVSEKRAAARAEKLAALRAGKSVGPK 387
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A024GHW7_9STRA (Ribos_L4_asso_C domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GHW7_9STRA)

HSP 1 Score: 411 bits (1056), Expect = 7.880e-140
Identity = 210/338 (62.13%), Postives = 260/338 (76.92%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLNLHHEARLKTQADYQDAQRAVRKAILKERRARKS 1014
            VFT PIRPD+VNFVHTN+AKN R  YAVS+ AGHQ SAESWGTGRAVS IPRVQGGGTQRAGQGAFGNMCR GRMFAPT+IWR+WHR +NVNQ+RYAVASALAA+A+P+LV ARGHR+E++ E+P V+D+ +ES  K   A+ +L  +GA  ++EKVKDSKKIR G+GK RNRRYVMRRGPL++Y    G+ KAFRN+PGVE   V+ LNLL LAPGGHLGRF IWTK AF+KLD+++G Y+ KS +K  Y LPRH M N +L RIINSDEIQS+VR     + +R   +K N L+N  VM++LN +     +T+   Q  ++  +  IL  +R +KS
Sbjct:   32 VFTAPIRPDVVNFVHTNMAKNKRQAYAVSRGAGHQHSAESWGTGRAVSRIPRVQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVASALAASALPSLVTARGHRIEKLSEIPCVLDDMVESLQKTSQAVKLLAKIGADEDIEKVKDSKKIRTGRGKSRNRRYVMRRGPLIVYASPNGLEKAFRNIPGVEVAHVERLNLLQLAPGGHLGRFVIWTKTAFEKLDTLYGTYSKKSNMKVDYTLPRHLMNNANLGRIINSDEIQSIVRPGIYHKHRR--CQKKNPLKNLGVMVKLNPYTLVARRTELRAQALRKEKKAEILAAKRNKKS 367
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A7J7Q3B7_9CHLO (Component of cytosolic 80S ribosome and 60S large subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q3B7_9CHLO)

HSP 1 Score: 411 bits (1057), Expect = 9.910e-140
Identity = 209/305 (68.52%), Postives = 241/305 (79.02%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLN 915
            VF+ PIRPDIV  VHTN+ KNHR PYAVS +AGH T+AESWGTGRAVS IPRV GGGT RAGQGAFGNMCRGG MFAPTK WRRWHR +N+NQKRYAVASALAA+ +P LVMARGHR+E+V E+PLVV ++ ES TK   AL +L A+GA A+ EK +DSK IR GKGKMRNRRYV+R+GPLV+Y    GI KAFRNLPGVE   VD LNLL LAPGGHLGRF I+TK+AFD+LD IFG  T  S++K GY+LPR CMTN D+ R+INSDE+QSVV  PK    K   A K N L+N   M++LN
Sbjct:   26 VFSAPIRPDIVRTVHTNMNKNHRQPYAVSMKAGHNTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGHMFAPTKTWRRWHRKININQKRYAVASALAASGLPALVMARGHRIEQVAEVPLVVSDAAESITKTSKALELLKAVGADADTEKARDSKAIRRGKGKMRNRRYVLRKGPLVVYGADNGISKAFRNLPGVEVASVDALNLLQLAPGGHLGRFVIFTKSAFDRLDKIFGSTTTASEVKKGYKLPRACMTNADVTRLINSDEVQSVVNAPKESGAKH-YALKKNPLKNLGAMVKLN 329
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A2R6WB18_MARPO (Ribos_L4_asso_C domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WB18_MARPO)

HSP 1 Score: 408 bits (1049), Expect = 1.570e-138
Identity = 217/338 (64.20%), Postives = 260/338 (76.92%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEG--IHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLN-----------LHHEARLKTQADYQDAQRAV 975
            V   PIR DIV FVH NIAKN R PYAVSK+AGHQTSAESWGTGRAVS IPRV GGGT RAGQGAFGNMCRGGRMFAPTKIWR+WHR VN+NQKRYAV SALAA+A+P L++ARGH++E+VPE+PLV+ +++ES  K  +A+ IL  +GA  ++EKVK S  IR GKGKMRNRRY+ RRGPLV+Y  +EG  + KAFRN+PGVE   VD LN+L LAPGGHLGRF IWTK+AF+KLDSIFG + +KS +K GY+LPR  M N+DL RIINSDEIQS+VR PK  E KR+V +K N L+N   M++LN           +  E R+K +AD    +RA 
Sbjct:   28 VLLAPIRKDIVEFVHANIAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKVNINQKRYAVCSALAASAIPALLLARGHKIEKVPEVPLVLSDTVESIEKTSAAVKILKKIGAMDDIEKVKKSHNIRAGKGKMRNRRYISRRGPLVVYG-TEGAKLVKAFRNIPGVEVASVDRLNILQLAPGGHLGRFIIWTKSAFEKLDSIFGSFEEKSAVKKGYRLPRSMMGNSDLARIINSDEIQSIVR-PKKTEMKRRVLKK-NPLKNLGAMLKLNPYAKTARRMELIAQEQRVKAKADKLKVKRAT 362
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BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Match: A0A7S0RBK1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RBK1_9CHLO)

HSP 1 Score: 408 bits (1048), Expect = 2.220e-138
Identity = 207/305 (67.87%), Postives = 241/305 (79.02%), Query Frame = 1 
Query:    1 VFTVPIRPDIVNFVHTNIAKNHR*PYAVSKRAGHQTSAESWGTGRAVSHIPRVQGGGTQRAGQGAFGNMCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRVEEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKGKMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGGHLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIINSDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLN 915
            VF+ PIRPDIV  +HT++AKN R  Y+V  +AGHQT+AESWGTGRAVS IPRV GGGT RAGQGAFGNMCRGGRMFAPTK+WRRWHR +N+NQKRYAV SALAA+A+P LVMARGHRVE+VPE+PLV+ ++ ES TK   A+ +L  +GA  +VEK KDSK IR GKGKMRNRRY +R+GPLV+Y  + GI KAFRNLPGVE   VD LNLL LAPGGHLGRF IWTKAAF+KLD+IFG  T +S +K GY+LPR  M N DL R+INSDEIQSVVR PK    K     K N L+N   M++LN
Sbjct:   25 VFSAPIRPDIVRTIHTHMAKNKRQAYSVFYKAGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKININQKRYAVVSALAASALPALVMARGHRVEQVPEVPLVLSDAAESITKTSKAVEVLKKIGAYPDVEKSKDSKAIRAGKGKMRNRRYTLRKGPLVVYANNNGIAKAFRNLPGVEVASVDTLNLLQLAPGGHLGRFVIWTKAAFEKLDAIFGTATKESAVKKGYKLPRAIMANADLTRLINSDEIQSVVRAPKAGP-KTHAPLKKNPLKNLGAMLKLN 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129373.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIC4_9PHAE8.540e-20681.69Ribos_L4_asso_C domain-containing protein n=2 Tax=... [more]
A0A836CFT4_9STRA1.260e-15865.30Ribosomal protein L4 domain-containing protein n=1... [more]
A0A7S2UWI4_9STRA3.600e-15264.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B4FI22_MAIZE6.380e-14167.54Ribos_L4_asso_C domain-containing protein n=3 Tax=... [more]
A0A4D9D8J9_9STRA2.180e-14062.22Ribos_L4_asso_C domain-containing protein n=2 Tax=... [more]
A0A250XAY6_9CHLO6.830e-14061.99Ribos_L4_asso_C domain-containing protein n=1 Tax=... [more]
A0A024GHW7_9STRA7.880e-14062.13Ribos_L4_asso_C domain-containing protein n=2 Tax=... [more]
A0A7J7Q3B7_9CHLO9.910e-14068.52Component of cytosolic 80S ribosome and 60S large ... [more]
A0A2R6WB18_MARPO1.570e-13864.20Ribos_L4_asso_C domain-containing protein n=2 Tax=... [more]
A0A7S0RBK1_9CHLO2.220e-13867.87Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129373contigH-elongata_contig129373:434..1501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.9
Seed ortholog evalue2.9e-122
Seed eggNOG ortholog2880.D7G1N6
Preferred nameRPL4
KEGG koko:K02930
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0001558,GO:0002181,GO:0003360,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0008361,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022008,GO:0022603,GO:0022604,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030054,GO:0030154,GO:0030307,GO:0030312,GO:0030516,GO:0031090,GO:0031344,GO:0031346,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0040008,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055044,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090066,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0120035,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1990904,GO:2000026
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0088@1,KOG1475@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosomal protein L4 domain
Ec32 orthologEc-10_000420.1
Exons1
Model size1068
Cds size864
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.0365336-UTR-H-elongata_contig129373:433..6371622929769.0365336-UTR-H-elongata_contig129373:433..637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129373 434..637 +
1691679150.5853534-UTR-H-elongata_contig129373:433..6371691679150.5853534-UTR-H-elongata_contig129373:433..637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129373 434..637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.0556192-CDS-H-elongata_contig129373:637..15011622929769.0556192-CDS-H-elongata_contig129373:637..1501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129373 638..1501 +
1691679150.6022832-CDS-H-elongata_contig129373:637..15011691679150.6022832-CDS-H-elongata_contig129373:637..1501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129373 638..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129373.2150.1prot_H-elongata_contig129373.2150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129373 638..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129373.2150.1

>prot_H-elongata_contig129373.2150.1 ID=prot_H-elongata_contig129373.2150.1|Name=mRNA_H-elongata_contig129373.2150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MCRGGRMFAPTKIWRRWHRHVNVNQKRYAVASALAATAVPTLVMARGHRV
EEVPELPLVVDNSLESCTKIQSALAILVALGATAEVEKVKDSKKIRVGKG
KMRNRRYVMRRGPLVIYEKSEGIHKAFRNLPGVETVCVDHLNLLTLAPGG
HLGRFCIWTKAAFDKLDSIFGIYTDKSKIKTGYQLPRHCMTNTDLNRIIN
SDEIQSVVRVPKPDEQKRKVARKVNSLRNRDVMMRLNLHHEARLKTQADY
QDAQRAVRKAILKERRARKSEGKKFYLKANLEGDVKF*
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mRNA from alignment at H-elongata_contig129373:434..1501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129373.2150.1 ID=mRNA_H-elongata_contig129373.2150.1|Name=mRNA_H-elongata_contig129373.2150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-elongata_contig129373:434..1501+ (Himanthalia elongata Himel1 dioecious)
GTCTTCACGGTGCCCATTCGCCCGGACATCGTGAACTTCGTTCACACGAA
CATTGCCAAGAACCACCGCTAGCCTTACGCTGTGTCCAAGCGCGCAGGTC
ACCAGACCTCTGCCGAGTCTTGGGGTACCGGGCGTGCAGTCTCGCATATC
CCCCGTGTCCAGGGCGGTGGAACCCAGCGTGCTGGGCAGGGTGCTTTCGG
CAACATGTGCCGAGGCGGACGCATGTTTGCCCCGACCAAGATCTGGCGCC
GCTGGCACCGCCACGTTAACGTGAACCAGAAGCGCTACGCCGTCGCGTCT
GCCCTGGCTGCCACCGCCGTCCCCACCCTCGTCATGGCCCGCGGACATCG
GGTCGAGGAGGTTCCCGAGCTACCGCTCGTAGTGGACAACTCCTTGGAGT
CCTGTACTAAGATTCAGTCCGCCCTGGCCATTCTCGTGGCCCTTGGCGCC
ACCGCGGAGGTCGAGAAGGTCAAGGACTCGAAAAAGATCCGCGTCGGCAA
GGGAAAGATGAGGAACCGTCGCTACGTGATGCGCCGCGGTCCCCTCGTGA
TCTACGAGAAGTCCGAGGGGATCCACAAGGCCTTCCGCAACCTTCCCGGG
GTGGAGACGGTGTGCGTGGACCACCTCAATCTTCTTACGCTTGCTCCCGG
TGGTCACCTCGGCCGATTCTGTATCTGGACCAAGGCGGCGTTTGACAAGC
TGGACTCGATCTTCGGCATCTACACAGACAAGTCGAAGATCAAAACGGGT
TACCAGTTGCCCCGCCACTGCATGACTAACACCGATCTCAACCGGATCAT
TAACTCCGACGAGATCCAGAGCGTCGTGCGCGTTCCCAAGCCGGACGAGC
AGAAGCGTAAGGTGGCTCGCAAAGTGAACTCCCTCAGGAACCGCGACGTG
ATGATGCGTCTGAACCTTCATCACGAGGCCCGCCTCAAGACACAGGCCGA
CTACCAGGATGCGCAGAGGGCTGTCCGCAAGGCGATCCTGAAGGAGCGCC
GCGCTCGCAAGAGTGAGGGGAAGAAGTTCTACCTGAAGGCCAACCTCGAG
GGCGACGTGAAGTTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig129373:434..1501+

>mRNA_H-elongata_contig129373.2150.1 ID=mRNA_H-elongata_contig129373.2150.1|Name=mRNA_H-elongata_contig129373.2150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig129373:434..1501+ (Himanthalia elongata Himel1 dioecious)
ATGTGCCGAGGCGGACGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTG
GCACCGCCACGTTAACGTGAACCAGAAGCGCTACGCCGTCGCGTCTGCCC
TGGCTGCCACCGCCGTCCCCACCCTCGTCATGGCCCGCGGACATCGGGTC
GAGGAGGTTCCCGAGCTACCGCTCGTAGTGGACAACTCCTTGGAGTCCTG
TACTAAGATTCAGTCCGCCCTGGCCATTCTCGTGGCCCTTGGCGCCACCG
CGGAGGTCGAGAAGGTCAAGGACTCGAAAAAGATCCGCGTCGGCAAGGGA
AAGATGAGGAACCGTCGCTACGTGATGCGCCGCGGTCCCCTCGTGATCTA
CGAGAAGTCCGAGGGGATCCACAAGGCCTTCCGCAACCTTCCCGGGGTGG
AGACGGTGTGCGTGGACCACCTCAATCTTCTTACGCTTGCTCCCGGTGGT
CACCTCGGCCGATTCTGTATCTGGACCAAGGCGGCGTTTGACAAGCTGGA
CTCGATCTTCGGCATCTACACAGACAAGTCGAAGATCAAAACGGGTTACC
AGTTGCCCCGCCACTGCATGACTAACACCGATCTCAACCGGATCATTAAC
TCCGACGAGATCCAGAGCGTCGTGCGCGTTCCCAAGCCGGACGAGCAGAA
GCGTAAGGTGGCTCGCAAAGTGAACTCCCTCAGGAACCGCGACGTGATGA
TGCGTCTGAACCTTCATCACGAGGCCCGCCTCAAGACACAGGCCGACTAC
CAGGATGCGCAGAGGGCTGTCCGCAAGGCGATCCTGAAGGAGCGCCGCGC
TCGCAAGAGTGAGGGGAAGAAGTTCTACCTGAAGGCCAACCTCGAGGGCG
ACGTGAAGTTCTAGATGTGCCGAGGCGGACGCATGTTTGCCCCGACCAAG
ATCTGGCGCCGCTGGCACCGCCACGTTAACGTGAACCAGAAGCGCTACGC
CGTCGCGTCTGCCCTGGCTGCCACCGCCGTCCCCACCCTCGTCATGGCCC
GCGGACATCGGGTCGAGGAGGTTCCCGAGCTACCGCTCGTAGTGGACAAC
TCCTTGGAGTCCTGTACTAAGATTCAGTCCGCCCTGGCCATTCTCGTGGC
CCTTGGCGCCACCGCGGAGGTCGAGAAGGTCAAGGACTCGAAAAAGATCC
GCGTCGGCAAGGGAAAGATGAGGAACCGTCGCTACGTGATGCGCCGCGGT
CCCCTCGTGATCTACGAGAAGTCCGAGGGGATCCACAAGGCCTTCCGCAA
CCTTCCCGGGGTGGAGACGGTGTGCGTGGACCACCTCAATCTTCTTACGC
TTGCTCCCGGTGGTCACCTCGGCCGATTCTGTATCTGGACCAAGGCGGCG
TTTGACAAGCTGGACTCGATCTTCGGCATCTACACAGACAAGTCGAAGAT
CAAAACGGGTTACCAGTTGCCCCGCCACTGCATGACTAACACCGATCTCA
ACCGGATCATTAACTCCGACGAGATCCAGAGCGTCGTGCGCGTTCCCAAG
CCGGACGAGCAGAAGCGTAAGGTGGCTCGCAAAGTGAACTCCCTCAGGAA
CCGCGACGTGATGATGCGTCTGAACCTTCATCACGAGGCCCGCCTCAAGA
CACAGGCCGACTACCAGGATGCGCAGAGGGCTGTCCGCAAGGCGATCCTG
AAGGAGCGCCGCGCTCGCAAGAGTGAGGGGAAGAAGTTCTACCTGAAGGC
CAACCTCGAGGGCGACGTGAAGTTCTAG
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