mRNA_H-elongata_contig129190.2143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129190.2143.1
Unique NamemRNA_H-elongata_contig129190.2143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot
Match: D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 6.790e-53
Identity = 115/239 (48.12%), Postives = 142/239 (59.41%), Query Frame = 1 
Query:    1 LLCLLESVPREPVYVAWPF------STPGTESVGDAGGTDYDSGSVARSVLISPNRQPMPPLLKGFAALLRSLAVTEWLAGSLTLLMRWAHSRETRSGGGQQNPSSWWGKMLLTGSGRSVVERLMKLHRHVLMEVSRARADHQHWVESLEAAD------VEGDENSPVQHHRPS--------------PCMPWPEPDFYKLLIVAHNGAAVGSGLDMEGSVPAHTLEFGTVVVAYERLA 639
            +L LLE +PREPVYVAWP        T                     S    PN   +PPLLK  + LLR LA TEWLAG+LTLL RWAHSR  ++  GQQ  +S WG +L++GSGR V+ERLM+LHR+V ME SRA+A+HQ W+ +LEAA+       EG E +                      P MPWPEPDF+++ +VA +GA VGSGLD +GSV  HT+E GTVVVAYER A
Sbjct:    1 MLGLLECIPREPVYVAWPVLPAEEDGTXXXXXXXXXXXXXXXXXXXXGSRSAPPNE--LPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQ-AASRWGAILVSGSGRRVLERLMRLHRNVFMEFSRAKAEHQTWLRTLEAANQTAPPSAEGKEQTTDXXXXXXXXXXXXXXXXXXCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAA 236
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BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot
Match: A0A6H5LD86_9PHAE (DUF913 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.620e-25
Identity = 66/138 (47.83%), Postives = 86/138 (62.32%), Query Frame = 1 
Query:    1 LLCLLESVPREPVYVAWPFSTPGTESVGDAGGTDY---------DSGSVARSVLISPNRQPMPPLLKGFAALLRSLAVTEWLAGSLTLLMRWAHSRETRSGGGQQNPSSWWGKMLLTGSGRSVVERLMKLHRHVLMEV 387
            +L +LE +PREPVYVAWP      +   D+               S S  RS   +P    +PPLLK  + LLR L  TEWLAG+LTLL RWAHSR  ++  GQQ  +S WG +L++GSGR V+ERLM+LHR+VL+E+
Sbjct:  670 MLGVLECIPREPVYVAWPVLPAEEDETADSXXXXXXXXXXKGHSSSSSGPRSA--APTE--LPPLLKAMSGLLRCLTATEWLAGALTLLTRWAHSRGAQTAAGQQ-AASRWGAILVSGSGRRVLERLMRLHRNVLVEI 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2U2_ECTSI6.790e-5348.12UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LD86_9PHAE3.620e-2547.83DUF913 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129190contigH-elongata_contig129190:395..1436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue2.5e-46
Seed eggNOG ortholog2880.D7G2U2
EggNOG free text desc.Ubiquitin associated domain
EggNOG OGs2D4WP@1,2SWJ7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-16_001500.1
Exons2
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.3537695-CDS-H-elongata_contig129190:394..6491622929768.3537695-CDS-H-elongata_contig129190:394..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129190 395..649 -
1691679150.3205755-CDS-H-elongata_contig129190:394..6491691679150.3205755-CDS-H-elongata_contig129190:394..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129190 395..649 -
1622929768.3892763-CDS-H-elongata_contig129190:1052..14361622929768.3892763-CDS-H-elongata_contig129190:1052..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129190 1053..1436 -
1691679150.3319745-CDS-H-elongata_contig129190:1052..14361691679150.3319745-CDS-H-elongata_contig129190:1052..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129190 1053..1436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129190.2143.1prot_H-elongata_contig129190.2143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129190 395..1436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129190.2143.1

>prot_H-elongata_contig129190.2143.1 ID=prot_H-elongata_contig129190.2143.1|Name=mRNA_H-elongata_contig129190.2143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
LLCLLESVPREPVYVAWPFSTPGTESVGDAGGTDYDSGSVARSVLISPNR
QPMPPLLKGFAALLRSLAVTEWLAGSLTLLMRWAHSRETRSGGGQQNPSS
WWGKMLLTGSGRSVVERLMKLHRHVLMEVSRARADHQHWVESLEAADVEG
DENSPVQHHRPSPCMPWPEPDFYKLLIVAHNGAAVGSGLDMEGSVPAHTL
EFGTVVVAYERLA
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mRNA from alignment at H-elongata_contig129190:395..1436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129190.2143.1 ID=mRNA_H-elongata_contig129190.2143.1|Name=mRNA_H-elongata_contig129190.2143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig129190:395..1436- (Himanthalia elongata Himel1 dioecious)
CTGCTTTGTTTGTTGGAGAGCGTGCCCCGGGAACCGGTGTACGTTGCCTG
GCCGTTCTCTACACCCGGGACGGAATCTGTAGGGGACGCCGGTGGCACGG
ACTATGACTCTGGCTCTGTGGCGAGGTCTGTCCTCATCTCCCCCAATCGG
CAGCCGATGCCCCCGCTGCTGAAGGGTTTCGCGGCTCTGCTCCGGAGCCT
GGCGGTGACGGAGTGGCTCGCCGGATCCTTGACCCTGCTGATGCGTTGGG
CGCATTCGAGGGAAACGCGATCGGGTGGCGGGCAGCAGAACCCCAGCAGC
TGGTGGGGGAAAATGCTACTGACCGGGAGCGGGCGCAGTGTTGTCGAGAG
GCTCATGAAGCTTCACCGCCACGTGCTGATGGAGGTATTGTATAATATGG
TATAGCAGGGTTGGTTAGGGGAGGCGGGAGCGGGGGTTGTGGCCAGCGGT
TGTTTGTTGTCTCGAAAATTCGTTCCGATTTTGTTGTTGTAATATTGCTC
TAGTACAGAAATGCATATAAACAGTGCTCGATAGAAATATATAGTAATAG
TGTAATCATTAGAAAATACAGTAATTATTAACGTGTAATTATAGTATATG
TGAGGTCTTCACATATACAGCAGAGAAAAATGCGTTACTTGGCGCATGTG
TTTTTTCTTAAAAGAACGCGACGGGACTGTCCACTCCTCGCGTCTTTAAG
GTGACGGCGATGTGCTGACCTAAGAGTAGCGCAAGCAATGCCTATAGTGA
TGCAATGCCTATAGTAATATATTTGTGTTTTCCCCAGGTTTCTCGCGCGA
GGGCCGACCATCAGCACTGGGTGGAAAGCCTCGAAGCCGCTGATGTCGAG
GGAGACGAAAACAGCCCCGTCCAGCATCATAGACCGTCGCCATGCATGCC
GTGGCCAGAGCCCGACTTCTACAAGCTGCTGATCGTGGCGCACAATGGGG
CGGCGGTGGGGTCTGGTCTAGATATGGAGGGGAGCGTTCCGGCGCACACG
CTGGAGTTCGGTACCGTCGTCGTTGCTTATGAGAGGTTAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig129190:395..1436-

>mRNA_H-elongata_contig129190.2143.1 ID=mRNA_H-elongata_contig129190.2143.1|Name=mRNA_H-elongata_contig129190.2143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig129190:395..1436- (Himanthalia elongata Himel1 dioecious)
CTGCTTTGTTTGTTGGAGAGCGTGCCCCGGGAACCGGTGTACGTTGCCTG
GCCGTTCTCTACACCCGGGACGGAATCTGTAGGGGACGCCGGTGGCACGG
ACTATGACTCTGGCTCTGTGGCGAGGTCTGTCCTCATCTCCCCCAATCGG
CAGCCGATGCCCCCGCTGCTGAAGGGTTTCGCGGCTCTGCTCCGGAGCCT
GGCGGTGACGGAGTGGCTCGCCGGATCCTTGACCCTGCTGATGCGTTGGG
CGCATTCGAGGGAAACGCGATCGGGTGGCGGGCAGCAGAACCCCAGCAGC
TGGTGGGGGAAAATGCTACTGACCGGGAGCGGGCGCAGTGTTGTCGAGAG
GCTCATGAAGCTTCACCGCCACGTGCTGATGGAGCTGCTTTGTTTGTTGG
AGAGCGTGCCCCGGGAACCGGTGTACGTTGCCTGGCCGTTCTCTACACCC
GGGACGGAATCTGTAGGGGACGCCGGTGGCACGGACTATGACTCTGGCTC
TGTGGCGAGGTCTGTCCTCATCTCCCCCAATCGGCAGCCGATGCCCCCGC
TGCTGAAGGGTTTCGCGGCTCTGCTCCGGAGCCTGGCGGTGACGGAGTGG
CTCGCCGGATCCTTGACCCTGCTGATGCGTTGGGCGCATTCGAGGGAAAC
GCGATCGGGTGGCGGGCAGCAGAACCCCAGCAGCTGGTGGGGGAAAATGC
TACTGACCGGGAGCGGGCGCAGTGTTGTCGAGAGGCTCATGAAGCTTCAC
CGCCACGTGCTGATGGAGGTTTCTCGCGCGAGGGCCGACCATCAGCACTG
GGTGGAAAGCCTCGAAGCCGCTGATGTCGAGGGAGACGAAAACAGCCCCG
TCCAGCATCATAGACCGTCGCCATGCATGCCGTGGCCAGAGCCCGACTTC
TACAAGCTGCTGATCGTGGCGCACAATGGGGCGGCGGTGGGGTCTGGTCT
AGATATGGAGGGGAGCGTTCCGGCGCACACGCTGGAGTTCGGTACCGTCG
TCGTTGCTTATGAGAGGTTAGCGGTTTCTCGCGCGAGGGCCGACCATCAG
CACTGGGTGGAAAGCCTCGAAGCCGCTGATGTCGAGGGAGACGAAAACAG
CCCCGTCCAGCATCATAGACCGTCGCCATGCATGCCGTGGCCAGAGCCCG
ACTTCTACAAGCTGCTGATCGTGGCGCACAATGGGGCGGCGGTGGGGTCT
GGTCTAGATATGGAGGGGAGCGTTCCGGCGCACACGCTGGAGTTCGGTAC
CGTCGTCGTTGCTTATGAGAGGTTAGCG
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