mRNA_H-elongata_contig129159.2141.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129159.2141.1
Unique NamemRNA_H-elongata_contig129159.2141.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.870e-15
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            L+EHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ
Sbjct:  107 LEEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 142
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A835YX04_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX04_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.180e-11
Identity = 25/37 (67.57%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 SLKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            + K+H +++ RSDLLDC++D+CSPEVLVQ+SDNFDYQ
Sbjct:  206 AFKDHAQIEFRSDLLDCYIDICSPEVLVQISDNFDYQ 242
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A4U0U5X2_9PEZI (W2 domain-containing protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0U5X2_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 2.370e-9
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQV 114
            LK+H E+++RSDL+DC +D+C+PEVL Q SDNFD+Q+
Sbjct:  213 LKDHPEMEIRSDLIDCGIDICTPEVLAQWSDNFDWQM 249
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A6G0WSE0_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-9
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 SLKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            + ++H +L LR DL+D H+D+CSP+VLVQ SDNFDYQ
Sbjct:  201 AFEDHSQLSLRYDLMDAHIDICSPDVLVQFSDNFDYQ 237
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A482RZP5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZP5_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 6.660e-9
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQV 114
            L +  +L   SDLLDCHVD+CSPE+++Q SDNFDYQV
Sbjct:  134 LDDCADLAFYSDLLDCHVDICSPELILQFSDNFDYQV 170
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A8H3F5R6_9LECA (Mannose-1-phosphate guanyltransferase n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3F5R6_9LECA)

HSP 1 Score: 58.2 bits (139), Expect = 8.270e-9
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            LKEHGEL++R DL+DC +D+C+P+VL   SDNFDY+
Sbjct:  215 LKEHGELEIRGDLVDCFIDICTPDVLGLWSDNFDYR 250
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A1Z5TIV3_HORWE (Uncharacterized protein n=4 Tax=Hortaea werneckii TaxID=91943 RepID=A0A1Z5TIV3_HORWE)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQV 114
            LKEH E+ +R DL+DC +D+C+PEVL Q SDNFD+Q+
Sbjct:  803 LKEHVEIDVREDLIDCGIDICTPEVLAQWSDNFDWQM 839
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A3M6VHR1_9STRA (W2 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHR1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 22/36 (61.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            L++H ++ LRSDLLDC++DVCSPEVL++ +++FDYQ
Sbjct:  210 LEDHAQIALRSDLLDCYIDVCSPEVLLKFAEDFDYQ 245
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: H3GKU1_PHYRM (W2 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKU1_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 22/36 (61.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            L++H ++ LRSDLLDC++DVCSPEVL++ +++FDYQ
Sbjct:  204 LEDHAQIALRSDLLDCYIDVCSPEVLLKFAEDFDYQ 239
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BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Match: A0A3R7J8W0_9STRA (W2 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8W0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 22/36 (61.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 LKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQ 111
            L++H ++ LRSDLLDC++DVCSPEVL++ +++FDYQ
Sbjct:  211 LEDHAQIALRSDLLDCYIDVCSPEVLLKFAEDFDYQ 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129159.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKA1_ECTSI1.870e-1597.22eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A835YX04_9STRA2.180e-1167.57eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A4U0U5X2_9PEZI2.370e-962.16W2 domain-containing protein n=1 Tax=Salinomyces t... [more]
A0A6G0WSE0_9STRA3.240e-962.16eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A482RZP5_9ARCH6.660e-964.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8H3F5R6_9LECA8.270e-963.89Mannose-1-phosphate guanyltransferase n=1 Tax=Hete... [more]
A0A1Z5TIV3_HORWE1.130e-862.16Uncharacterized protein n=4 Tax=Hortaea werneckii ... [more]
A0A3M6VHR1_9STRA1.130e-861.11W2 domain-containing protein n=2 Tax=Peronospora e... [more]
H3GKU1_PHYRM1.130e-861.11W2 domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A3R7J8W0_9STRA1.130e-861.11W2 domain-containing protein n=4 Tax=Phytophthora ... [more]

Pages

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129159contigH-elongata_contig129159:330..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue9.3e-13
Seed eggNOG ortholog2880.D8LKA1
Preferred nameEIF2B5
KEGG koko:K03240,ko:K03859
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
GOsGO:0000003,GO:0001541,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0014002,GO:0014003,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0030900,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032045,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034284,GO:0034641,GO:0034645,GO:0034976,GO:0042063,GO:0042221,GO:0042552,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045727,GO:0045948,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048708,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060322,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1461@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.20728-CDS-H-elongata_contig129159:329..4431622929768.20728-CDS-H-elongata_contig129159:329..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129159 330..443 -
1691679150.2838178-CDS-H-elongata_contig129159:329..4431691679150.2838178-CDS-H-elongata_contig129159:329..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129159 330..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129159.2141.1prot_H-elongata_contig129159.2141.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129159 330..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129159.2141.1

>prot_H-elongata_contig129159.2141.1 ID=prot_H-elongata_contig129159.2141.1|Name=mRNA_H-elongata_contig129159.2141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
SLKEHGELQLRSDLLDCHVDVCSPEVLVQLSDNFDYQV
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mRNA from alignment at H-elongata_contig129159:330..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129159.2141.1 ID=mRNA_H-elongata_contig129159.2141.1|Name=mRNA_H-elongata_contig129159.2141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig129159:330..443- (Himanthalia elongata Himel1 dioecious)
TCTCTCAAGGAACACGGAGAGCTGCAGCTGCGAAGTGATCTCCTGGATTG
TCATGTTGACGTTTGTTCGCCGGAGGTCTTGGTGCAGCTGTCCGATAATT
TTGACTACCAAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig129159:330..443-

>mRNA_H-elongata_contig129159.2141.1 ID=mRNA_H-elongata_contig129159.2141.1|Name=mRNA_H-elongata_contig129159.2141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig129159:330..443- (Himanthalia elongata Himel1 dioecious)
TCTCTCAAGGAACACGGAGAGCTGCAGCTGCGAAGTGATCTCCTGGATTG
TCATGTTGACGTTTGTTCGCCGGAGGTCTTGGTGCAGCTGTCCGATAATT
TTGACTACCAAGTGTCTCTCAAGGAACACGGAGAGCTGCAGCTGCGAAGT
GATCTCCTGGATTGTCATGTTGACGTTTGTTCGCCGGAGGTCTTGGTGCA
GCTGTCCGATAATTTTGACTACCAAGTG
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