mRNA_H-elongata_contig12914.2140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12914.2140.1
Unique NamemRNA_H-elongata_contig12914.2140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A6H5KKY5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKY5_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.050e-53
Identity = 114/303 (37.62%), Postives = 152/303 (50.17%), Query Frame = 1 
Query:    1 KCLEMLYRCGGDYYQARLKLLHMLRLWNAQFPNAMTGTKNLASARATAEKESARRIAEWRAIAGPKAEALPDLSKESPEDPEPEYLTRVTHWSKGEMMVSSKTAAIVVHDANGC-----------------GGGGAVSGQKVWTTADEKEFWSRPMEGMFTGEWALKRQIEGAIPTAPPEARWTH-LPMDLNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAACWVCGSGGDLICCDGCEGVYHVECAHLPQVPEGDWFCATCM 855
            KCLE+++R  GDY +AR  L ++ R W +++  A   T+  ASA+A   +E+A R+A                                                                          GG G V   +      +  FW RP++ +  GE ALKRQ++G + + PP AR    L  DLNL+ PW   EA  +TR M+E G+K+F+  Q K+ P RQ+CELVDRYY GWKQT+GY+ LKE +  SK+Q+AC  C +GGDLICCDGCE VYH EC  L  VPEGDWFC  C+
Sbjct:  672 KCLEIVHRFEGDYGEARKLLRNLSRSWKSRYLMASNSTRETASAKAIVARETAARLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRGGRGHVG--RAGAPGTQDAFWCRPLKSLAGGESALKRQVQGGVSSIPPGARSKDKLSPDLNLARPWLPHEAAMYTRAMLEEGSKNFYAAQ-KALPGRQVCELVDRYYGGWKQTDGYRALKESIRLSKKQSACGGCHAGGDLICCDGCEAVYHPECVGLSVVPEGDWFCPACV 971
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A7S4D894_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D894_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 5.070e-22
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:  517 LNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQKSFP---DRQICELVDRYYAGWKQTEGYQQLKEKLL--RSKRQAACWVCGSGGDLICCDGCEGVYHVECAHLP--QVPEGDWFCATC 852
            L    PW  +EA AF R   E+  KD H V++       +R I EL+D YY  +K+TE Y+ LK++L+  R      C +C  GGDLICC+ C+ VYH+EC   P   +PEGDW+C TC
Sbjct:   12 LKRPRPWRDAEAAAFERACAEH-LKDLHRVRRAMSAAGFERSISELMDYYYNKFKKTERYKILKKELIKFRELNNDHCAICNDGGDLICCEACDDVYHMECLDPPLSALPEGDWYCPTC 129
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A7S1C3G3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.360e-13
Identity = 49/127 (38.58%), Postives = 62/127 (48.82%), Query Frame = 1 
Query:  484 PEARWTHLPMDLNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKR--QAACWVCGSGGDLICCDGCEGVYHVECAHLP--QVPEGDWFCATC 852
            PEAR    P  + L+  WS +E+  F   +   G K F +V     P R   E V+ +Y  WK+   + Q K  L RS       C VCGSGGDL+CCD C   +HV C   P   +PE DW C  C
Sbjct:   45 PEARSNVPPPPVRLARQWSAAESALFELGLGRYG-KFFGLVAM-DIPHRTARECVEYFYGVWKKLPRHSQWKRGLGRSLEFHDDVCAVCGSGGDLLCCDSCSLAFHVSCLRPPLFDLPEEDWACPRC 169
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: D0NYY2_PHYIT (PHD-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NYY2_PHYIT)

HSP 1 Score: 76.6 bits (187), Expect = 8.590e-13
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F R M  +G K FH+V+++ FP+    ELV ++Y  WK+   Y++  +           K +  +R AA      C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  118 FERAMDRHGKK-FHLVKRR-FPNVATRELVSKFYL-WKKAPEYEKWHDGQREKKRKREAKRIAQQRPAADQHLEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 231
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: W2PKE7_PHYPN (PHD-type domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2PKE7_PHYPN)

HSP 1 Score: 77.8 bits (190), Expect = 1.450e-12
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F R M  +G K FH+V+++ FP     ELV ++Y  WK+T  Y++  +           K +  +R AA      C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  110 FERAMDRHGKK-FHLVKRR-FPTVATRELVSKFYL-WKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 223
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A833WH57_PHYIN (Pleckstrin homology domain-containing proteinD n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WH57_PHYIN)

HSP 1 Score: 76.6 bits (187), Expect = 2.620e-12
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F R M  +G K FH+V+++ FP+    ELV ++Y  WK+   Y++  +           K +  +R AA      C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:   43 FERAMDRHGKK-FHLVKRR-FPNVATRELVSKFYL-WKKAPEYEKWHDGQREKKRKREAKRIAQQRPAADQHLEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 156
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: G4YQJ2_PHYSP (PHD-type domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YQJ2_PHYSP)

HSP 1 Score: 74.7 bits (182), Expect = 3.690e-12
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKR-----------------QAACWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F + M  +G K FH+V+++        ELV ++Y  WK+T  Y+Q  E+    KR                 +  C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC  C
Sbjct:  121 FEKAMDRHGKK-FHLVKRRLGRQVTTRELVSKFYL-WKKTPEYEQWHERQREKKRAREAKRMARMRPAADQHREYCEMCLKGGKLLCCDGCERAYHLNCVRPSLLDVPEGDWFCPYC 235
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A6A3MM28_9STRA (PHD-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MM28_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.450e-12
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAA-----------------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F + M  +G K FH+V+++        ELV ++Y  WK+T  Y+Q  E+    KR                    C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  108 FEKAMDRHGKK-FHLVKRRLGRQVTTRELVSKFYM-WKKTPEYEQWHERQREKKRSREAKRLARLRPAADQHREYCEMCLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 222
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A6G0SHC3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SHC3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.240e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAA-----------------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F + M  +G K FH+V+++        ELV ++Y  WK+T  Y+Q  E+    KR                    C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  108 FEKAMDRHGKK-FHLVKRRLGRQVTTRELVSKFYM-WKKTPEYEQWHERQREKKRSREAKRLARLRPAADQHREYCEMCLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 222
[Close]
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A329S0Z3_9STRA (PHD-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0Z3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.610e-11
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  559 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 852
            F R M  +G K FH+++++ FP     ELV ++Y  WK+   Y++  +           K +  +R AA      C VC  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  110 FERAMDRHGKK-FHLLKRR-FPTVGTRELVSKFYL-WKKAPEYEKWHDGQREKKRKREAKRIAQQRPAADQHLEFCGVCLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKY5_9PHAE4.050e-5337.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4D894_HETAK5.070e-2243.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1C3G3_9STRA3.360e-1338.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D0NYY2_PHYIT8.590e-1338.46PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
W2PKE7_PHYPN1.450e-1239.32PHD-type domain-containing protein n=19 Tax=Phytop... [more]
A0A833WH57_PHYIN2.620e-1238.46Pleckstrin homology domain-containing proteinD n=1... [more]
G4YQJ2_PHYSP3.690e-1236.75PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6A3MM28_9STRA9.450e-1236.75PHD-type domain-containing protein n=3 Tax=Phytoph... [more]
A0A6G0SHC3_9STRA1.240e-1136.75Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A329S0Z3_9STRA1.610e-1138.46PHD-type domain-containing protein n=2 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12914contigH-elongata_contig12914:5408..7317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog2880.D7FN55
GOsGO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006333,GO:0006338,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031491,GO:0034728,GO:0035327,GO:0042623,GO:0042766,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044877,GO:0051276,GO:0070615,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.TPL-binding domain in jasmonate signalling
EggNOG OGs2D07F@1,2SD3A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRING/FYVE/PHD-type zinc finger protein
Ec32 orthologEc-06_008460.1
Exons5
Model size855
Cds size843
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12914.2140.1prot_H-elongata_contig12914.2140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12914 5408..7305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.0496106-CDS-H-elongata_contig12914:5407..54751622929768.0496106-CDS-H-elongata_contig12914:5407..5475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 5408..5475 -
1691679150.2117257-CDS-H-elongata_contig12914:5407..54751691679150.2117257-CDS-H-elongata_contig12914:5407..5475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 5408..5475 -
1622929768.0828338-CDS-H-elongata_contig12914:5669..57271622929768.0828338-CDS-H-elongata_contig12914:5669..5727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 5670..5727 -
1691679150.223067-CDS-H-elongata_contig12914:5669..57271691679150.223067-CDS-H-elongata_contig12914:5669..5727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 5670..5727 -
1622929768.099266-CDS-H-elongata_contig12914:5992..60111622929768.099266-CDS-H-elongata_contig12914:5992..6011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 5993..6011 -
1691679150.2349048-CDS-H-elongata_contig12914:5992..60111691679150.2349048-CDS-H-elongata_contig12914:5992..6011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 5993..6011 -
1622929768.114274-CDS-H-elongata_contig12914:6329..64301622929768.114274-CDS-H-elongata_contig12914:6329..6430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 6330..6430 -
1691679150.2507668-CDS-H-elongata_contig12914:6329..64301691679150.2507668-CDS-H-elongata_contig12914:6329..6430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 6330..6430 -
1622929768.1311772-CDS-H-elongata_contig12914:6708..73051622929768.1311772-CDS-H-elongata_contig12914:6708..7305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 6709..7305 -
1691679150.2681713-CDS-H-elongata_contig12914:6708..73051691679150.2681713-CDS-H-elongata_contig12914:6708..7305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12914 6709..7305 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.1576517-UTR-H-elongata_contig12914:7305..73171622929768.1576517-UTR-H-elongata_contig12914:7305..7317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12914 7306..7317 -
1691679150.2754862-UTR-H-elongata_contig12914:7305..73171691679150.2754862-UTR-H-elongata_contig12914:7305..7317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12914 7306..7317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12914.2140.1

>prot_H-elongata_contig12914.2140.1 ID=prot_H-elongata_contig12914.2140.1|Name=mRNA_H-elongata_contig12914.2140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
MLYRCGGDYYQARLKLLHMLRLWNAQFPNAMTGTKNLASARATAEKESAR
RIAEWRAIAGPKAEALPDLSKESPEDPEPEYLTRVTHWSKGEMMVSSKTA
AIVVHDANGCGGGGAVSGQKVWTTADEKEFWSRPMEGMFTGEWALKRQIE
GAIPTAPPEARWTHLPMDLNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQ
KSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAACWVCGSGGDL
ICCDGCEGVYHVECAHLPQVPEGDWFCATCM
back to top

mRNA from alignment at H-elongata_contig12914:5408..7317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12914.2140.1 ID=mRNA_H-elongata_contig12914.2140.1|Name=mRNA_H-elongata_contig12914.2140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1910bp|location=Sequence derived from alignment at H-elongata_contig12914:5408..7317- (Himanthalia elongata Himel1 dioecious)
AAGTGTCTCGAGATGCTGTACCGCTGCGGGGGGGACTACTACCAGGCTCG
GTTGAAGCTCCTTCACATGCTGCGCTTGTGGAACGCCCAGTTCCCAAATG
CGATGACCGGCACGAAGAATTTAGCCTCGGCGCGGGCGACAGCAGAGAAG
GAGTCGGCTAGACGCATAGCGGAGTGGCGGGCTATAGCTGGACCAAAGGC
GGAGGCGCTACCTGACCTTTCGAAAGAATCACCGGAGGATCCAGAACCCG
AATATCTTACGAGGGTCACGCACTGGTCGAAGGGGGAGATGATGGTTTCG
TCCAAGACGGCCGCGATAGTGGTTCACGATGCGAACGGCTGCGGCGGCGG
TGGTGCCGTCAGCGGCCAGAAGGTTTGGACCACCGCTGATGAGAAAGAGT
TCTGGAGTCGGCCAATGGAGGGCATGTTCACCGGGGAATGGGCGCTGAAG
CGGCAGATCGAAGGGGCCATTCCGACAGCGCCACCCGAGGCGAGGTGGAC
CCACCTGCCGATGGACTTAAACCTCTCTCACCCGTGGAGCCAAAGCGAGG
CAAAGGCGTTCACCCGTGTGATGGTCGAGAATGGCACCAAAGACTTTCAT
GTCGTCCAGGTAAAAAATACGAAAACAATTGTCCCGTCTGCTAAGGCGGT
AGTCTTCGGAACGTTCTGAAAAATTATATGTCGCTTCACGGAGAAGTAAC
TCATGTCGATCCAAATAAAAACACAGTACTATCGGTGTTCCCGCTTCACA
GTACGATTCCTGTGAACGCCGATGCGCAACAATCGTTTCCCTTGTGTGCT
GACGGCGATCCTCCGACTGTTCCGATCCGCCCGCGCACCCTCGCCTCGCT
CCTTGATCTCAATCGCATTCATGTCCCCACGTTTGAGCAGAAATCGTTCC
CAGATCGGCAGATTTGTGAGCTGGTGGATCGTTACTACGCGGGTTGGAAG
CAGACGGAAGGTTACCAGCAGCTCAAGGAGAAACTTCTGTGAGAGAGACG
TTGGGAAATACGACCATCGCGTAAATTTGGCGATGAGCCACGGTGGCTCA
CTCTTTTCGGCGTAGCGTAGCCTAGGCCATGCATGCCCGCGTCTCGGTGT
CGCCGCAGGGACTCCGGAACTCGCGTGACCCTCTCGTTTTCTTATCTTCT
GGTGTCGTATGTTTTTTCCCCTCCCATCTCCCCCCCGACCTCTGCTTGAT
CTCCTTCCCTTTCCTATTCCTCCTATCCCCTCCCGTGGACCATCGTGGAC
TGGTGTCGCTACTTGAATCCGCCTGGCAACTCCCACGTACTGTCTCTCTG
GCGCAGACGGTCTAAGCGGCAAGCGGTAAGCTTGAAATTCGAGCAACGCT
GTTGGCGAGCTGAGGCTACGGCTACCGCTCGACTGTTACACTATGTAGTT
ACTAGACGTATGATCCGGTGCGATAGGTGGGATTTTGACTTGTTTCAGCG
AGATCTCGAGCACTTGCGCTGTTATGGACGTCGTGACGTGGAACGATATC
TGCACATCCCACTGGCTTAATAATGCCTCACCGAACATCGTTCATTTTCT
TCCCGTCTGCGCGTGGTGCTTTTTTTTTTCTTCCTGGCAGGCGTGCTGGG
TGTGCGGTTCGGGTGGAGACCTCATCTGCTGCGACGGTTGCGAGGGTGGT
GAGGCCTCTTTGCCTTGATTACTCTTGCTACCGCACCGAGCCATTGTATA
CTTCCGTGCGTAATGTCATTTCGCATTAAGGATATTTCTTGATACGAGTA
CCTTACTGTACAGTGATGATTTCCTCCGTCTTCCCCATCGCCATTGTACC
CCTTCCCGCCCCCCACCCTTGCACGCGGTCACTTCCGTGCAGTATACCAC
GTGGAGTGCGCACACCTACCCCAGGTGCCGGAGGGGGATTGGTTTTGTGC
GACCTGCATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12914:5408..7317-

>mRNA_H-elongata_contig12914.2140.1 ID=mRNA_H-elongata_contig12914.2140.1|Name=mRNA_H-elongata_contig12914.2140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig12914:5408..7317- (Himanthalia elongata Himel1 dioecious)
ATGCTGTACCGCTGCGGGGGGGACTACTACCAGGCTCGGTTGAAGCTCCT
TCACATGCTGCGCTTGTGGAACGCCCAGTTCCCAAATGCGATGACCGGCA
CGAAGAATTTAGCCTCGGCGCGGGCGACAGCAGAGAAGGAGTCGGCTAGA
CGCATAGCGGAGTGGCGGGCTATAGCTGGACCAAAGGCGGAGGCGCTACC
TGACCTTTCGAAAGAATCACCGGAGGATCCAGAACCCGAATATCTTACGA
GGGTCACGCACTGGTCGAAGGGGGAGATGATGGTTTCGTCCAAGACGGCC
GCGATAGTGGTTCACGATGCGAACGGCTGCGGCGGCGGTGGTGCCGTCAG
CGGCCAGAAGGTTTGGACCACCGCTGATGAGAAAGAGTTCTGGAGTCGGC
CAATGGAGGGCATGTTCACCGGGGAATGGGCGCTGAAGCGGCAGATCGAA
GGGGCCATTCCGACAGCGCCACCCGAGGCGAGGTGGACCCACCTGCCGAT
GGACTTAAACCTCTCTCACCCGTGGAGCCAAAGCGAGGCAAAGGCGTTCA
CCCGTGTGATGGTCGAGAATGGCACCAAAGACTTTCATGTCGTCCAGATG
CTGTACCGCTGCGGGGGGGACTACTACCAGGCTCGGTTGAAGCTCCTTCA
CATGCTGCGCTTGTGGAACGCCCAGTTCCCAAATGCGATGACCGGCACGA
AGAATTTAGCCTCGGCGCGGGCGACAGCAGAGAAGGAGTCGGCTAGACGC
ATAGCGGAGTGGCGGGCTATAGCTGGACCAAAGGCGGAGGCGCTACCTGA
CCTTTCGAAAGAATCACCGGAGGATCCAGAACCCGAATATCTTACGAGGG
TCACGCACTGGTCGAAGGGGGAGATGATGGTTTCGTCCAAGACGGCCGCG
ATAGTGGTTCACGATGCGAACGGCTGCGGCGGCGGTGGTGCCGTCAGCGG
CCAGAAGGTTTGGACCACCGCTGATGAGAAAGAGTTCTGGAGTCGGCCAA
TGGAGGGCATGTTCACCGGGGAATGGGCGCTGAAGCGGCAGATCGAAGGG
GCCATTCCGACAGCGCCACCCGAGGCGAGGTGGACCCACCTGCCGATGGA
CTTAAACCTCTCTCACCCGTGGAGCCAAAGCGAGGCAAAGGCGTTCACCC
GTGTGATGGTCGAGAATGGCACCAAAGACTTTCATGTCGTCCAGCAGAAA
TCGTTCCCAGATCGGCAGATTTGTGAGCTGGTGGATCGTTACTACGCGGG
TTGGAAGCAGACGGAAGGTTACCAGCAGCTCAAGGAGAAACTTCTCAGAA
ATCGTTCCCAGATCGGCAGATTTGTGAGCTGGTGGATCGTTACTACGCGG
GTTGGAAGCAGACGGAAGGTTACCAGCAGCTCAAGGAGAAACTTCTACGG
TCTAAGCGGCAAGCGACGGTCTAAGCGGCAAGCGGCGTGCTGGGTGTGCG
GTTCGGGTGGAGACCTCATCTGCTGCGACGGTTGCGAGGGTGGCGTGCTG
GGTGTGCGGTTCGGGTGGAGACCTCATCTGCTGCGACGGTTGCGAGGGTG
TATACCACGTGGAGTGCGCACACCTACCCCAGGTGCCGGAGGGGGATTGG
TTTTGTGCGACCTGCATGTATACCACGTGGAGTGCGCACACCTACCCCAG
GTGCCGGAGGGGGATTGGTTTTGTGCGACCTGCATG
back to top