mRNA_H-elongata_contig1291.2138.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1291.2138.1 vs. uniprot
Match: D7FQ32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ32_ECTSI) HSP 1 Score: 627 bits (1617), Expect = 1.950e-210 Identity = 439/783 (56.07%), Postives = 539/783 (68.84%), Query Frame = 1
Query: 127 VAVMVGARRDVNEYINAGGDLEVRDDEGATALFHAAFWTHLDVAKDLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRECEGTGVDRQD--EEINDGHDEDEGHHALDMSDEPSAGDASTLVGDPESQ----GKCSRKSPNRPSDGRSTAASMSPRTSRN----HSAKTGAGCGPRD--TRRAHFRVSYPPKINGGGKWHSMTAYMFEPSAHDVVRQAHQARLSGD-HQPFVASNY--VAEDSDPNLPPGTEVVVRPRFPRNFCINPVHATVAWMREANAVSFEVRSPPSASSGAVVGCVDFYLGAVLIGQAHVEMNVVRSNAS---AKEPDILGPVAKMFDAVYVCFAPFDAPLLLPSLERLRRLDIVKLSWPTIDGSERETKDCIREASMFQVYWSAAAQKDGRVKSELNYAASLAKNGALAVRGIYWDPSMNPSSIETDQGIVFPVRLHNSFLLEDPSIIIALMQNKTSSSLAYDSRTMPKSQGEARNNENYLDYESGARDGAAGRERMAQENTERFVEKLCTTAVISTRSHVTMLRQLVGDASVVDLPRLVWMFPDDGGKPGGVDLEDASWLSKPIIIGFLCPISMKAGRCGEDGWGYRMVLPRGWVSKIGIALKIGAVIVAAAIDAGKIDELPIPMPPKTDAGGAGKD-EGSMSLEEWRGKVVDAVYDGLASTVNAKTNEMVDSAFMEFHTNEGGSSPPPAAQFCKDTKHSYANLRSLIH-RHDK 2415
+AVMVG RR V ++IN GDL+ +DD+GATALFHAAFWTH+++AKDL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+CEGTGVDRQ E +D + +S+ PSAGD ST+VGDP Q G S KSPNRP D RS AAS SPRTSRN H+ TG D + RAHFR +Y P I GGGKWH MTAY+FEPSAH VR AHQAR+ GD H PFV S+ ED D +PPGT+VVVRPRFPR C++PV++TV WM++ +AV FEVR P S SSG + G VDFY+GAVLIGQAHVEM+VV+ N S A +PD+LGPVAK FD +YVCFA D PLL+PSLE RL I + W DG+E++TK IRE+S+FQ+ WS +A++ RV+ E+ YA+SLAK G+LAVRGIYWD +M+ +SI+T G++FPVR+HNSFLLE+ + T+SS + G++ E+ D+ GA +A N VEKL T AV TR HV+ LR +VG A+ VD PRL W++PDD GKP VD+ WL KPI + FLCPISMK G CG+DG GY++ LPRGW SKIG+ALKIG V+VAAA DA ++ LP+P P + G+D EG SL + +G +V+A +DGLA V K N+++DS FM+ T S+ P AQ CK+ K SY NL SL+H ++DK
Sbjct: 1 MAVMVGDRRAVKKFINGSGDLDEKDDDGATALFHAAFWTHVEIAKDLISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGASSEVLNHMGQTPRQCEGTGVDRQPDGENFDDXXXXXGPRGSGAVSEAPSAGDESTVVGDPGVQDRDAGFSSGKSPNRPHDERSAAASSSPRTSRNRSGAHAGDTGRAKENVDAASTRAHFRAAYRPTIRGGGKWHPMTAYLFEPSAHSAVRNAHQARIDGDQHHPFVDSDNGNAVEDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPASTSSGTISGYVDFYIGAVLIGQAHVEMSVVKPNDSSGAADKPDVLGPVAKAFDTMYVCFAAADKPLLIPSLEWFNRLGIFNIVWRPEDGNEKDTKRLIRESSIFQICWSMSAKESDRVRHEVKYASSLAKAGSLAVRGIYWDSTMDVTSIQTAHGLMFPVRMHNSFLLEEACAFLLDRAADTASSTPETATGALAGGGQSARVEDDGDHNDGA---------VAVPN----VEKLNTAAVQHTRGHVSRLRDMVGGANEVDCPRLAWIYPDDSGKPRSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYKISLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLP--PVSAVSSWGEDGEGGKSLTQMQGDLVNAAFDGLAGAVPDKWNDLIDSTFMDAETET--SARPATAQLCKEVKQSYKNLSSLLHQKYDK 766
BLAST of mRNA_H-elongata_contig1291.2138.1 vs. uniprot
Match: A0A6H5JCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.280e-38 Identity = 101/219 (46.12%), Postives = 132/219 (60.27%), Query Frame = 1
Query: 2077 IALKIGAVIVAAAIDAGKIDELPIPMPPKTDAGGAGKD-EGSMSLEEWRGKVVDAVYDGLASTVNAKTNEMVDSAFMEFHTNEGGSSPPPAAQFCKDTKHSYANLRSLIH-RHDKGFERTGLVRVSHEDTTNVEWVHPSVAHLFRRQGPAIFHIKALEAADAEAATRNATTRERARGFHDSALTCRDIRQEGGRLDGM-NVMSTLRLLEDQIVAMMDGG 2724
+ALKIG V+VAAA DA ++ LP+P P T G+D EG SL + +G +V+A +DGLA V K+N+++DS FM T S+PP AQ CK+ K SY NL SL+H ++DKG E+ S + EWVHPSVA LFR QGP++F AL ADA+AA R A R + + S +GG G +VMSTLRLLE Q++AM GG
Sbjct: 1 MALKIGVVVVAAASDADEVAGLPLP--PATAVSSWGEDGEGGKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSIFMNAETET--SAPPATAQLCKEVKQSYKNLSSLLHQKYDKGLEKVTYAG-SRGTSPTTEWVHPSVAELFRSQGPSVFGAGALATADADAA-REAVRRHKEQKKRSS---------DGGNRPGSEDVMSTLRLLEKQVLAMAGGG 204
BLAST of mRNA_H-elongata_contig1291.2138.1 vs. uniprot
Match: F0Y427_AURAN (Flavodoxin-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y427_AURAN) HSP 1 Score: 87.8 bits (216), Expect = 7.600e-14 Identity = 62/227 (27.31%), Postives = 105/227 (46.26%), Query Frame = 1
Query: 1816 VISTRSHVTMLRQLVGDASVVDLPRLVWMFPDDGGKPGGVD--LEDASWLSKPIIIGFLCPISMKAGRCGEDGWGYRMVLPRGWVSKIGIALKIGAVIVAAAIDAGKIDELPIPMPPKTDAGGAGKDEGSMSLEEWRGKVVDAVYDGLASTVNAKTNEMVDSAFMEFHTNEGGSSPPPAAQFCKD-TKHSYANLRSLIHRHDKGFERTGLVRV--SHEDTTNVEWVH 2481
V +TR +L L DA+ + P+LVWM + K V L +SW KP+ + F+CP++M+ + G+DG GYR+VLP+ W+ K G+A+ + ++ A+ G G M+++ R K D +Y+ + ++ T + ++ E CK ++ S+ L+ + + D G + TGLV+V T EWVH
Sbjct: 1095 VDATRGQTRLLMDLCSDAT--ECPKLVWMARE---KEAAVTRWLTPSSWYGKPVRVQFVCPVTMQVAKSGKDGGGYRVVLPKDWIKKWGVAVNLSLTVLRVAMQLGA-----------ASMGCYHAHVPDMTIDRARLKTADELYEEVNKGLDPATRDALEKGAPE----------------CKALSEASFQMLKGELKKEDPGLDLTGLVKVVGGSGATLCTEWVH 1289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1291.2138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1291.2138.1 >prot_H-elongata_contig1291.2138.1 ID=prot_H-elongata_contig1291.2138.1|Name=mRNA_H-elongata_contig1291.2138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=914bp ERATLFRSSCEQRLSLTKYQDTPSPQRAGKGKISVMSDVDLHVAVMVGARback to top mRNA from alignment at H-elongata_contig1291:3808..11613+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1291.2138.1 ID=mRNA_H-elongata_contig1291.2138.1|Name=mRNA_H-elongata_contig1291.2138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7806bp|location=Sequence derived from alignment at H-elongata_contig1291:3808..11613+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1291:3808..11613+ >mRNA_H-elongata_contig1291.2138.1 ID=mRNA_H-elongata_contig1291.2138.1|Name=mRNA_H-elongata_contig1291.2138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5484bp|location=Sequence derived from alignment at H-elongata_contig1291:3808..11613+ (Himanthalia elongata Himel1 dioecious)back to top |