mRNA_H-elongata_contig128968.2131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128968.2131.1
Unique NamemRNA_H-elongata_contig128968.2131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128968.2131.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.550e-23
Identity = 78/180 (43.33%), Postives = 100/180 (55.56%), Query Frame = 1 
Query:    1 PALVFRSGRVVEDDVLSLLGRPRSRQPGENSP----------RTGPEQGAIANSSGQVSLGGVDGEPTRTGEGNNRGCGEADGFWRRRGVTGAGAVGGDTIVDELGGMQN-----IRGSGA----------QPLLVSLADLTTAGLEKMLQAEGDSKMYFDPEAQRWVGDDVDLSGFDDP 465
            P+L+FR G V E DVLSL GRPRSR P  +SP          R  P   A   ++        +       +G+     E +    ++GV  A   GGD  V +L G        +R SG+          QPLLVSLADLTTAGL+K+LQAEG SKM+FDP++QRWVG++VDLSGF+DP
Sbjct:  219 PSLIFRPGTVDEGDVLSLHGRPRSRNPEASSPAKYGSAEERARLRPSTAADRCTAASPEQAQAEWRDMDDADGDGERGLEVEPRMNQQGVIRA-TTGGD--VADLDGPAGGDGGWMRRSGSXXXXXXXXXXQPLLVSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDP 395
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BLAST of mRNA_H-elongata_contig128968.2131.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.280e-23
Identity = 75/180 (41.67%), Postives = 96/180 (53.33%), Query Frame = 1 
Query:    1 PALVFRSGRVVEDDVLSLLGRPRSRQPGENSPR---TGPEQGAIANSSGQVSLGGVDGEPTRTGEGNNRGCGEADGFWRR--------------RGVTGAGAVGGDTIVDELGGMQNIRGSGA--------QPLLVSLADLTTAGLEKMLQAEGDSKMYFDPEAQRWVGDDVDLSGFDDP 465
            P+L+FR G V E DVLSL GRPRSR+P  +SP    +G E+  +  S+   +       P +T +   R   + DG   R              R  TG      D      GG                 QPLL+SLADLTTAGL+K+LQAEG SKM+FDP++QRWVG++VDLSGF+DP
Sbjct:  350 PSLIFRPGTVDEGDVLSLHGRPRSRKPEASSPAKYGSGEERARLCPSAPADTC--TAASPGQT-QAERRDMDDEDGDGERGLVVEPRMNQHGVIRATTGGRVADLDGPAGGSGGWMRXXXXXXXXXXXXXXQPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDP 526
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BLAST of mRNA_H-elongata_contig128968.2131.1 vs. uniprot
Match: A0A836CHZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-10
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  319 QPLLVSLADLTTAGLEKMLQAEGDSKMYFDPEAQRWVG---DDVDLSGFD 459
            +P+LVSLAD+T AGLEK+L+A GD++MYFD  AQRWVG   D VD+SGF+
Sbjct:  408 EPILVSLADVTAAGLEKLLEAGGDTQMYFDSVAQRWVGGAADRVDMSGFE 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128968.2131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KL36_9PHAE1.550e-2343.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZY2_ECTSI7.280e-2341.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHZ5_9STRA2.940e-1066.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128968contigH-elongata_contig128968:101..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.164095-CDS-H-elongata_contig128968:100..5651622929767.164095-CDS-H-elongata_contig128968:100..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128968 101..565 +
1691679149.8037097-CDS-H-elongata_contig128968:100..5651691679149.8037097-CDS-H-elongata_contig128968:100..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128968 101..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128968.2131.1prot_H-elongata_contig128968.2131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128968 101..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128968.2131.1

>prot_H-elongata_contig128968.2131.1 ID=prot_H-elongata_contig128968.2131.1|Name=mRNA_H-elongata_contig128968.2131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
PALVFRSGRVVEDDVLSLLGRPRSRQPGENSPRTGPEQGAIANSSGQVSL
GGVDGEPTRTGEGNNRGCGEADGFWRRRGVTGAGAVGGDTIVDELGGMQN
IRGSGAQPLLVSLADLTTAGLEKMLQAEGDSKMYFDPEAQRWVGDDVDLS
GFDDP
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mRNA from alignment at H-elongata_contig128968:101..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128968.2131.1 ID=mRNA_H-elongata_contig128968.2131.1|Name=mRNA_H-elongata_contig128968.2131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at H-elongata_contig128968:101..565+ (Himanthalia elongata Himel1 dioecious)
CCGGCGCTCGTCTTCCGCTCAGGGAGGGTAGTCGAAGACGACGTTCTCTC
TCTCCTAGGACGACCGCGCTCGCGACAGCCGGGGGAAAACTCTCCAAGGA
CAGGCCCCGAGCAGGGCGCGATCGCGAACTCGAGCGGTCAAGTGTCCCTC
GGCGGAGTCGACGGCGAGCCTACTAGAACTGGTGAAGGGAACAATCGGGG
CTGCGGTGAAGCGGACGGTTTCTGGAGGCGGCGTGGCGTGACGGGCGCGG
GTGCAGTTGGAGGGGACACTATAGTAGATGAGCTTGGCGGTATGCAGAAC
ATCCGGGGGAGTGGAGCCCAGCCGCTCTTGGTCTCCCTAGCAGACCTGAC
AACGGCCGGCCTCGAGAAGATGCTGCAGGCGGAGGGAGACTCGAAGATGT
ACTTCGATCCCGAAGCTCAACGATGGGTCGGTGATGATGTCGATCTCTCC
GGTTTCGACGACCCC
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Coding sequence (CDS) from alignment at H-elongata_contig128968:101..565+

>mRNA_H-elongata_contig128968.2131.1 ID=mRNA_H-elongata_contig128968.2131.1|Name=mRNA_H-elongata_contig128968.2131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig128968:101..565+ (Himanthalia elongata Himel1 dioecious)
CCGGCGCTCGTCTTCCGCTCAGGGAGGGTAGTCGAAGACGACGTTCTCTC
TCTCCTAGGACGACCGCGCTCGCGACAGCCGGGGGAAAACTCTCCAAGGA
CAGGCCCCGAGCAGGGCGCGATCGCGAACTCGAGCGGTCAAGTGTCCCTC
GGCGGAGTCGACGGCGAGCCTACTAGAACTGGTGAAGGGAACAATCGGGG
CTGCGGTGAAGCGGACGGTTTCTGGAGGCGGCGTGGCGTGACGGGCGCGG
GTGCAGTTGGAGGGGACACTATAGTAGATGAGCTTGGCGGTATGCAGAAC
ATCCGGGGGAGTGGAGCCCAGCCGCTCTTGGTCTCCCTAGCAGACCTGAC
AACGGCCGGCCTCGAGAAGATGCTGCAGGCGGAGGGAGACTCGAAGATGT
ACTTCGATCCCGAAGCTCAACGATGGGTCGGTGATGATGTCGATCTCTCC
GGTTTCGACGACCCCCCGGCGCTCGTCTTCCGCTCAGGGAGGGTAGTCGA
AGACGACGTTCTCTCTCTCCTAGGACGACCGCGCTCGCGACAGCCGGGGG
AAAACTCTCCAAGGACAGGCCCCGAGCAGGGCGCGATCGCGAACTCGAGC
GGTCAAGTGTCCCTCGGCGGAGTCGACGGCGAGCCTACTAGAACTGGTGA
AGGGAACAATCGGGGCTGCGGTGAAGCGGACGGTTTCTGGAGGCGGCGTG
GCGTGACGGGCGCGGGTGCAGTTGGAGGGGACACTATAGTAGATGAGCTT
GGCGGTATGCAGAACATCCGGGGGAGTGGAGCCCAGCCGCTCTTGGTCTC
CCTAGCAGACCTGACAACGGCCGGCCTCGAGAAGATGCTGCAGGCGGAGG
GAGACTCGAAGATGTACTTCGATCCCGAAGCTCAACGATGGGTCGGTGAT
GATGTCGATCTCTCCGGTTTCGACGACCCC
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