mRNA_H-elongata_contig12892.2129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12892.2129.1
Unique NamemRNA_H-elongata_contig12892.2129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-20
Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   10 NPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRNAWSIVE 219
            +PL WW+++  D+P LA+L RRVLAIPA+QA+SERLFS AG +V+K RN L+P  ++LLV +R++W IVE
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 291          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.360e-19
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   13 PLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRN 201
            PL WW++K ++YP LASL RRVL IPA QAQSER+FSSAGLVV+K R ++ PE++ L+VF+RN
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.470e-18
Identity = 40/71 (56.34%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    7 SNPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRNAWSIVE 219
            +NPL  W+ K+ +YP LA+L RRVLAIP+SQAQSER+FS+AGL V+  R++L  E+++LLV++RN W +V+
Sbjct:  481 NNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVD 551          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 76.3 bits (186), Expect = 1.950e-16
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    7 SNPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVF 192
            +NPL WWK  +  +P LASL +  L +PA+   SERLFSSAG +VSK+R  LSPEH+ +L F
Sbjct:   31 TNPLQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTF 92          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.010e-16
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1
Query:   43 DYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRNAWSIVE 219
            D+P LA+L RRVLAIPA+QA+SERLFS AG +V+K RN L+P  ++LLV +R++W IVE
Sbjct:  153 DFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 211          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A8B8GQ90_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8GQ90_9HEMI)

HSP 1 Score: 76.6 bits (187), Expect = 2.810e-15
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    4 HSNPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRN 201
            + NP +WWK ++  YP ++ L + +L IPAS A SER+FS+AG +++ +RNQ++P H+  LVF++N
Sbjct:  174 NDNPCLWWKARENVYPKISVLAKNILCIPASSASSERVFSTAGNIITPKRNQMTPYHLSALVFLKN 239          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A1A8M216_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M216_9TELE)

HSP 1 Score: 74.3 bits (181), Expect = 3.660e-15
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   10 NPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFV 195
            +PL+WWK  ++ +P LA L   +L IPA+   SERLFS+AG +VSK+R  LSPEH+ +L F+
Sbjct:   78 DPLIWWKANEQRFPTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDMLTFL 139          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A8B8G1X1_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8G1X1_9HEMI)

HSP 1 Score: 75.1 bits (183), Expect = 3.830e-15
Identity = 29/66 (43.94%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    4 HSNPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRN 201
            + NP +WWK ++  YP ++ L + +L IPAS A SER+FS+AG +++ +RN+++P H+  LVF++N
Sbjct:  114 NDNPCLWWKARENVYPKISVLAKNILCIPASSASSERVFSTAGNIITPKRNRMTPYHLSALVFLKN 179          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 72.4 bits (176), Expect = 4.830e-15
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   10 NPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVR 198
            +PL WWK+    YP LASL +  L IPA+   SER+FS+AG +VS +R+ ++PEH+ +LVF++
Sbjct:   22 SPLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 84          
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Match: A0A2S2NF35_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NF35_SCHGA)

HSP 1 Score: 72.0 bits (175), Expect = 1.330e-14
Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    4 HSNPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKRRNQLSPEHMQLLVFVRN 201
            + NP +WWK ++  YP ++ L + +L IPAS   S+R+FS+AG +++ +RN+++P H+  LVF++N
Sbjct:   47 NENPCLWWKARENVYPKISVLAKNILCIPASSTSSKRVFSTAGNIITPKRNRMTPYHLSALVFLKN 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12892.2129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.020e-2058.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE4.360e-1965.08Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI1.470e-1856.34Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A1A7ZCN3_NOTFU1.950e-1654.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A6H5JPB0_9PHAE4.010e-1662.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A8B8GQ90_9HEMI2.810e-1545.45zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8M216_9TELE3.660e-1551.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A8B8G1X1_9HEMI3.830e-1543.94zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8CIX7_9TELE4.830e-1549.21Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A2S2NF35_SCHGA1.330e-1440.91Zinc finger BED domain-containing protein 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12892contigH-elongata_contig12892:5078..5302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.5e-17
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.0604448-CDS-H-elongata_contig12892:5077..53021622929767.0604448-CDS-H-elongata_contig12892:5077..5302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12892 5078..5302 +
1691679149.7397616-CDS-H-elongata_contig12892:5077..53021691679149.7397616-CDS-H-elongata_contig12892:5077..5302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12892 5078..5302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12892.2129.1prot_H-elongata_contig12892.2129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12892 5078..5302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12892.2129.1

>prot_H-elongata_contig12892.2129.1 ID=prot_H-elongata_contig12892.2129.1|Name=mRNA_H-elongata_contig12892.2129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
QHSNPLVWWKIKKKDYPFLASLTRRVLAIPASQAQSERLFSSAGLVVSKR
RNQLSPEHMQLLVFVRNAWSIVEA*
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mRNA from alignment at H-elongata_contig12892:5078..5302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12892.2129.1 ID=mRNA_H-elongata_contig12892.2129.1|Name=mRNA_H-elongata_contig12892.2129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig12892:5078..5302+ (Himanthalia elongata Himel1 dioecious)
CAGCATAGCAATCCACTGGTGTGGTGGAAGATTAAGAAGAAGGACTACCC GTTTCTGGCCAGCCTGACTCGCCGTGTGCTCGCCATTCCTGCCTCGCAAG CCCAGTCAGAGCGCCTTTTTTCGTCAGCTGGATTGGTTGTGTCCAAGAGG CGTAACCAATTATCACCTGAACACATGCAGCTTCTCGTCTTTGTTCGCAA TGCCTGGTCAATTGTGGAAGCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig12892:5078..5302+

>mRNA_H-elongata_contig12892.2129.1 ID=mRNA_H-elongata_contig12892.2129.1|Name=mRNA_H-elongata_contig12892.2129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig12892:5078..5302+ (Himanthalia elongata Himel1 dioecious)
CAGCATAGCAATCCACTGGTGTGGTGGAAGATTAAGAAGAAGGACTACCC
GTTTCTGGCCAGCCTGACTCGCCGTGTGCTCGCCATTCCTGCCTCGCAAG
CCCAGTCAGAGCGCCTTTTTTCGTCAGCTGGATTGGTTGTGTCCAAGAGG
CGTAACCAATTATCACCTGAACACATGCAGCTTCTCGTCTTTGTTCGCAA
TGCCTGGTCAATTGTGGAAGCTTAGCAGCATAGCAATCCACTGGTGTGGT
GGAAGATTAAGAAGAAGGACTACCCGTTTCTGGCCAGCCTGACTCGCCGT
GTGCTCGCCATTCCTGCCTCGCAAGCCCAGTCAGAGCGCCTTTTTTCGTC
AGCTGGATTGGTTGTGTCCAAGAGGCGTAACCAATTATCACCTGAACACA
TGCAGCTTCTCGTCTTTGTTCGCAATGCCTGGTCAATTGTGGAAGCTTAG
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