mRNA_H-elongata_contig12870.2114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12870.2114.1
Unique NamemRNA_H-elongata_contig12870.2114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12870.2114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12870contigH-elongata_contig12870:712..3393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12870.2114.1prot_H-elongata_contig12870.2114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12870 712..3393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.5026312-CDS-H-elongata_contig12870:711..7491622929765.5026312-CDS-H-elongata_contig12870:711..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 712..749 -
1691679149.1127257-CDS-H-elongata_contig12870:711..7491691679149.1127257-CDS-H-elongata_contig12870:711..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 712..749 -
1622929765.5228019-CDS-H-elongata_contig12870:1379..14481622929765.5228019-CDS-H-elongata_contig12870:1379..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 1380..1448 -
1691679149.1234238-CDS-H-elongata_contig12870:1379..14481691679149.1234238-CDS-H-elongata_contig12870:1379..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 1380..1448 -
1622929765.5416877-CDS-H-elongata_contig12870:2095..21321622929765.5416877-CDS-H-elongata_contig12870:2095..2132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 2096..2132 -
1691679149.1363955-CDS-H-elongata_contig12870:2095..21321691679149.1363955-CDS-H-elongata_contig12870:2095..2132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 2096..2132 -
1622929765.5639815-CDS-H-elongata_contig12870:2973..30351622929765.5639815-CDS-H-elongata_contig12870:2973..3035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 2974..3035 -
1691679149.1458402-CDS-H-elongata_contig12870:2973..30351691679149.1458402-CDS-H-elongata_contig12870:2973..3035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 2974..3035 -
1622929765.5836115-CDS-H-elongata_contig12870:3320..33931622929765.5836115-CDS-H-elongata_contig12870:3320..3393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 3321..3393 -
1691679149.1549683-CDS-H-elongata_contig12870:3320..33931691679149.1549683-CDS-H-elongata_contig12870:3320..3393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12870 3321..3393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12870.2114.1

>prot_H-elongata_contig12870.2114.1 ID=prot_H-elongata_contig12870.2114.1|Name=mRNA_H-elongata_contig12870.2114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
TAPTETPVEPTTPAPVAPTPKPVSVPTPAPVDPSTPAPVTRTPKPAPVEP
STPAPVAPETPAPVDPSTPAPVTPTPKPVTAPTEAPVEPTMPA
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mRNA from alignment at H-elongata_contig12870:712..3393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12870.2114.1 ID=mRNA_H-elongata_contig12870.2114.1|Name=mRNA_H-elongata_contig12870.2114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2682bp|location=Sequence derived from alignment at H-elongata_contig12870:712..3393- (Himanthalia elongata Himel1 dioecious)
ACAGCCCCCACCGAGACTCCTGTCGAACCAACTACACCAGCGCCGGTGGC
TCCCACGCCTAAACCTGTTTCCGGTGAAGTTTCATGAAGTGCTTCATTTA
ATTATCTTTAGTCCCCCTTTTCCTCACAGTCCGGCCGTCCGTTTCTCTGG
ATTTAACCTTCTTCGAGCTCGTGAATCCCACGTGCTGGCCTGTCTCATGC
AATCGTTCTAATCACGGATTCGTATAGTATTGATGGCTAAGACTTTAAAG
TCGCAGTACAAATTTTTCTTAGGCCGTTTAGAGTTCATCATGCCCGATTG
GTTTGAACCAAGTCGGACTGAACATTCTCTTCGCCTCGTTATATACTTGC
CCCATCAGTCCCAACCCCTGCTCCTGTGGATCCATCTACGCCCGCGCCGG
TGACTCGCACGCCTAAGCCTGTTCCCGGTGAGAGGATCATGTAAATATGT
TATCTTTGTACCGCTTAAGACATTTTCAGTCGCGGGATAAGGAAGATGGT
TATAGCTAATTTGGACCGCTTCATGCCTAACCTCTCGTCACCAGGTCTGA
CGTGCCTTCTGACTCCCATCGTTTTCTCCCTTTATATTAACACGCCCAAA
TCATGTTTCACCCTGTGGACCCTTCTACGATAGCGTCGATCATTTATCCA
CATTGACATGCACTTTACAGGGCTTCTACGACGGAATCAGTATTGTACAA
AAAAAAAAAAAAAAAAAAAATGCAAGCCCCTATTNNNNNNNNNNACCAAA
ATTGAAAGAAAATTAAAAGGACTAAAAAAAAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGAAAGCCCACATGATTTATGCACAGTGGC
ATGCACTTTTCAGTGCTTCTACGACGGAATCAGTATTGTATAAGGAAAGC
ATACCGGGGAGCAGGACAACTAGGTTTGAATTCATTCAAAGTGCTTCACG
CCCCATTGATTCATATCGAGTCTGACGAGCCTTTTAATTCCTATAATTTT
ATCACTCTTTCCCTAACAGCCCCAACGCGTGCTCCTATAGGCGTTCCTAC
GCCCGCGCCGTTGCTCCGACGCCTGAGTCTGCTCCCGCGAAGGAAATATT
ATGTTGATTCATATCGTATTGCTCCCTGAAACATTAGTCGTCGTGGGGTA
GGGTGGATGGTTTTAGAGTATTCGAAGTGCCTCACGCTCGAGCGAATCCT
GGTATTACAAGTCTTTTATTTCCATTATTGCCTCTACCTCTCGCCAACAG
CTCCGACCGAGGCTCCTGTCGAACCATCTACGCCTGCGCCGGTTGCTCGT
ACGCCTAAGCCTGTTTTCGATGAAGCTTCATGTGGTGATTCATATATTGT
CGCTGCGTAAGGCATCCGTTGTCACGGGACTACGAGAGTAGGTTTACGCC
ATTAGGAGCGCTTCATATTTCCCCTATTAAAGGTAGATTTCACGAAAGTG
CTGATTCTAAGCATTGCTTCCCCTTATTACGACACGTCTGACGGAGGCTC
AAGTCGGCCCTCCTGCGTTAGCGCCTGTGGCGTCTACGCACCGACCTGCC
CCCTGGCGTGAGCCTTCTAAGAGATTTGGATCGTTTTGATGACTAAAGCT
TCTAATGTCGTTGGACAAGATAATGTGAGCTCATTAGAAGCTCCCCATAC
TTTAACACGCCGCACATAGTGTGACGAGCTTTTTATATTTTCATTAATAT
CCCCCTCTCCGCAACAATTCAGCCGTCCACTTCTCTGAATTTTATCTTTC
CCGAGCTCATGGCTCCATGCGCTGGCTTGCCCCCTGTAACCCGTATATTA
TCAGAATCGTATAACATTGATGGCGGAGCCTCTAACGTCGCAGCGCAACT
ATATCTGAGTTGTTTAAAGCCACCCCATACCCCCATTTCTTCGCACCAAG
TTGGCCTAAGTTCTTGTTTCCGATCATTGCATCTTCATTCGTCAGCCGAA
ACACCTGCTCCTGTGGATCCATCCACGCCCGCGCCGGTAACCCCGACGCC
TAAGCCTGTTACCGGTGAGAGAATCGTCTGAATATTTTATTTTAATACCC
CGTAAAGCATTCGCCATCGCGAAGTAAGGTAGATAATTTTAGCTAATTTG
GACCGCCTCGTGCCTTACCTCTCGTCATCAAGTCTGACGAACCTTCTAAC
TCCCATATTGTTCCCCTTTACATCAAAACGCTCAAATCATGGTTCACTCC
TGTGAACCCTTTTAGAATAGCGCCGATGATTTCTATACATAGACATGCAC
TCTGCAGTGTTTCTACGACGGGATCAGTATTATATAAGGAAATCCTATAA
GGAGCAGGGCAAATAGGTTTGAGGTCATTCGAAGCGCTCCACGCCCCATT
GATTCGTATCGGGTCTGACGCGCCTTCGGATATCCATCTTTTCACCTTCT
CTCCCTAATAGCTCCAACACGTGCTAGACGCTTCTACGCCTCCGCCGTGG
ATCCGACGTTTAAGCATGTTCCTGTTAAGAAACTAAGTTTTTACTTTATA
TAGTACAGTATTGGTCCTTTAAACGTTAGCCCTCGTAGGTTAAGATTTTT
TTTGTTTATTCCGAGCGCCACACGCGCAATCTCTTCGTGACATGGTTTTA
CAAGCCTTCTGGTTTCCATCATTTCTTTACCCGCTTGTCAACAGCCCCCA
CGGAGGCTCCTGTCGAACCAACTATGCCCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig12870:712..3393-

>mRNA_H-elongata_contig12870.2114.1 ID=mRNA_H-elongata_contig12870.2114.1|Name=mRNA_H-elongata_contig12870.2114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig12870:712..3393- (Himanthalia elongata Himel1 dioecious)
ACAGCCCCCACCGAGACTCCTGTCGAACCAACTACACCAGCGCCGGTGGC
TCCCACGCCTAAACCTGTTTCCGACAGCCCCCACCGAGACTCCTGTCGAA
CCAACTACACCAGCGCCGGTGGCTCCCACGCCTAAACCTGTTTCCGTCCC
AACCCCTGCTCCTGTGGATCCATCTACGCCCGCGCCGGTGACTCGCACGC
CTAAGCCTTCCCAACCCCTGCTCCTGTGGATCCATCTACGCCCGCGCCGG
TGACTCGCACGCCTAAGCCTGCTCCTGTCGAACCATCTACGCCTGCGCCG
GTTGCTCGCTCCTGTCGAACCATCTACGCCTGCGCCGGTTGCTCCCGAAA
CACCTGCTCCTGTGGATCCATCCACGCCCGCGCCGGTAACCCCGACGCCT
AAGCCTGTTACCGCCGAAACACCTGCTCCTGTGGATCCATCCACGCCCGC
GCCGGTAACCCCGACGCCTAAGCCTGTTACCGCCCCCACGGAGGCTCCTG
TCGAACCAACTATGCCCGCGCCCCCACGGAGGCTCCTGTCGAACCAACTA
TGCCCGCG
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