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Homology
BLAST of mRNA_H-elongata_contig12868.2110.1 vs. uniprot
Match: D7FXZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ5_ECTSI) HSP 1 Score: 293 bits (750), Expect = 2.120e-87 Identity = 175/318 (55.03%), Postives = 201/318 (63.21%), Query Frame = 1
Query: 1 GTIWKTLESDPSFSKLVAALDGTALSRRLNTLDKTA---RYTLFAPDDEAIDASQDFPKD-PTSLEVLMSFHTLAEGAYPQSVNGAHFSPQLFKADPAGGILSRDYYREFYAEAFVGGQVTSLAGPLLNVTRAPTPIDASWTFCPSLPLRARDDLEDRQATQVPETLSEPQSPMLSDIAADVAATAKAVSAAERAASSLLIEGVPVSETDITATNGVVHRLSTRAIAAPATAAGVLLNPPFPLSSAGS----------FAAMGELLRLAWPLVNGTLAGDGPLTVLAPTDAAFDLAIAAGQLPPRPWNPWKQSASSSS 912
GTIWKTL SDPSFS L AAL+ T+L+ L+ A YTLFAPDD+AI AS +FP+D P +LEVL+SFHTLA G YP S++GAHFS QL+K DP G LSRDYYREFYA++F GQ TSLAGPLLNV+RA + P + +A SLL+EGVPVSE DITATNGVVHRLS +A P T AGVLLNPPFPLS+AG F AMGEL+RLAWPLVN TL +GPLTVLAPTDAAFD+AIAAG LPPRPW ++SSSS
Sbjct: 130 GTIWKTLCSDPSFSLLAAALNSTSLAATLDANGGGAGAMAYTLFAPDDDAIKASPEFPQDDPKALEVLLSFHTLAAGVYPLSLSGAHFSQQLYKVDPTSGSLSRDYYREFYADSFEDGQFTSLAGPLLNVSRASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRPPV------------------HSALSLLVEGVPVSEADITATNGVVHRLSAAVMAPPDTVAGVLLNPPFPLSAAGGRGGSGGPGSGFGAMGELVRLAWPLVNTTLTEEGPLTVLAPTDAAFDIAIAAGDLPPRPWYEVNSTSSSSS 429
BLAST of mRNA_H-elongata_contig12868.2110.1 vs. uniprot
Match: A0A6H5J734_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J734_9PHAE) HSP 1 Score: 283 bits (723), Expect = 6.160e-83 Identity = 173/324 (53.40%), Postives = 201/324 (62.04%), Query Frame = 1
Query: 1 GTIWKTLESDPSFSKLVAALDGTALSRRLNTLDKTA---RYTLFAPDDEAIDASQDFPKD-PTSLEVLMSFHTLAEGAYPQSVNGAHFSPQLFKADPAGGILSRDYYREFYAEAFVGGQV---TSLAGPLLNVTRAPTPIDASWTFCPSLPLRARDDLEDRQATQVPETLSEPQSPMLSDIAADVAATAKAVSAAERAASSLLIEGVPVSETDITATNGVVHRLSTRAIAAPATAAGVLLNPPFPLSSAGS----------FAAMGELLRLAWPLVNGTLAGDGPLTVLAPTDAAFDLAIAAGQLPPRPWNPWKQSASSSSPIL 921
GTIW+TL SDPSFS L AAL+ T+L+ L+ A YTLFAPDD+AI AS +FP+D P +LEVL+SFHTLA G YP S++GAHFS QL+K DP G LSRDYYREFYA++F GQ TSLAGPLLNV+R + L P +LS LL+EG+PVSE DITATNGVVHRLS +A P T AGVLLNPPFPLS+AG F A+GEL+RLAWPLVN TL +GPLTVLAPTDAAFD+ IAAG LPPRPW ++SSSSP L
Sbjct: 318 GTIWETLCSDPSFSLLAAALNSTSLAATLDGDGGGAGAMAYTLFAPDDDAIKASPEFPQDDPEALEVLLSFHTLAAGVYPLSLSGAHFSQQLYKVDPTSGSLSRDYYREFYADSFEDGQAGKFTSLAGPLLNVSRTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-LRPPVHSVLS----------------------LLVEGIPVSEADITATNGVVHRLSAAVMAPPDTVAGVLLNPPFPLSAAGGXXXXXXXXXGFGALGELVRLAWPLVNTTLTEEGPLTVLAPTDAAFDIVIAAGYLPPRPWYEVNSTSSSSSPSL 618
BLAST of mRNA_H-elongata_contig12868.2110.1 vs. uniprot
Match: A0A835Z7H6_9STRA (FAS1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H6_9STRA) HSP 1 Score: 169 bits (428), Expect = 7.590e-44 Identity = 123/313 (39.30%), Postives = 157/313 (50.16%), Query Frame = 1
Query: 1 GTIWKTLESDPSFSKLVAALDGTALSRRLNTLDKT----ARYTLFAPDDEAIDA---SQDFPKDPTSLEVLMSFHTLAEGAYPQSVNGAHFSPQLFKADPAGGILSRDYYREFYAEAFVGGQVTSLAGPLLNVTRAPTPIDASWTFCPSLPLRARDDLEDRQATQVPETLSEPQSPMLSDIAADVAATAKAVSAAERAASSLLIEGVPVSETDITATNGVVHRLSTRAIAAPATAAGVLLN--PPFPLSSAGSFAAMGELLRLAWPLVNGTL-AGDGPLTVLAPTDAAFDLAIAAGQLPPRPWNPWKQSASSS 909
GTIW TL + P F+KLVAAL+ T + L T + TLFAPDD A + S + ++EVL +HTLA+G YP+S+NG HFS QLF PAG +L+RD Y FYA+ F G Q+ SLA P L++++ A L ++ +++ DITATNGV+HR+S P L PP PL+ AG+FAA GEL+ LA +VN TL AGD PLTV PTDAAFD AIAAG LP RP+ QS +SS
Sbjct: 45 GTIWDTLVASPHFTKLVAALNATESGGLRDMLAGTTVPASALTLFAPDDSAYQSLLGSSGAAQSAAAVEVLYCYHTLAQGRYPRSLNGRHFSQQLFPV-PAGKVLTRDVYAGFYAQHFTGLQMPSLAVPPLSISKI-------------------------------------------------------------APGQLSVQDAHITQPDITATNGVIHRISALLHPPPTVLELALCGTAPPEPLAYAGTFAAFGELVALAGDVVNATLSAGDTPLTVFMPTDAAFDAAIAAGHLPHRPFG---QSMTSS 292
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 930 |
| Cds size | 930 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929764.858456-CDS-H-elongata_contig12868:1285..1384 | 1622929764.858456-CDS-H-elongata_contig12868:1285..1384 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 1286..1384 - |
| 1691679148.831908-CDS-H-elongata_contig12868:1285..1384 | 1691679148.831908-CDS-H-elongata_contig12868:1285..1384 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 1286..1384 - |
| 1622929764.8752835-CDS-H-elongata_contig12868:2040..2526 | 1622929764.8752835-CDS-H-elongata_contig12868:2040..2526 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 2041..2526 - |
| 1691679148.8399627-CDS-H-elongata_contig12868:2040..2526 | 1691679148.8399627-CDS-H-elongata_contig12868:2040..2526 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 2041..2526 - |
| 1622929764.891307-CDS-H-elongata_contig12868:3160..3336 | 1622929764.891307-CDS-H-elongata_contig12868:3160..3336 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 3161..3336 - |
| 1691679148.847747-CDS-H-elongata_contig12868:3160..3336 | 1691679148.847747-CDS-H-elongata_contig12868:3160..3336 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 3161..3336 - |
| 1622929764.9258327-CDS-H-elongata_contig12868:4857..5026 | 1622929764.9258327-CDS-H-elongata_contig12868:4857..5026 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 4858..5026 - |
| 1691679148.8549294-CDS-H-elongata_contig12868:4857..5026 | 1691679148.8549294-CDS-H-elongata_contig12868:4857..5026 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12868 4858..5026 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12868.2110.1 >prot_H-elongata_contig12868.2110.1 ID=prot_H-elongata_contig12868.2110.1|Name=mRNA_H-elongata_contig12868.2110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=310bp
GTIWKTLESDPSFSKLVAALDGTALSRRLNTLDKTARYTLFAPDDEAIDA SQDFPKDPTSLEVLMSFHTLAEGAYPQSVNGAHFSPQLFKADPAGGILSR DYYREFYAEAFVGGQVTSLAGPLLNVTRAPTPIDASWTFCPSLPLRARDD LEDRQATQVPETLSEPQSPMLSDIAADVAATAKAVSAAERAASSLLIEGV PVSETDITATNGVVHRLSTRAIAAPATAAGVLLNPPFPLSSAGSFAAMGE LLRLAWPLVNGTLAGDGPLTVLAPTDAAFDLAIAAGQLPPRPWNPWKQSA SSSSPILTPD back to topmRNA from alignment at H-elongata_contig12868:1286..5026- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig12868.2110.1 ID=mRNA_H-elongata_contig12868.2110.1|Name=mRNA_H-elongata_contig12868.2110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3741bp|location=Sequence derived from alignment at H-elongata_contig12868:1286..5026- (Himanthalia elongata Himel1 dioecious) GGCACGATATGGAAAACCCTTGAATCAGACCCTTCGTTTTCGAAGCTCGT
GGCGGCGCTGGATGGGACCGCGCTGTCTCGAAGGCTGAACACGCTAGACA
AGACCGCGCGCTACACCCTGTTTGCACCGGACGATGAAGCAATCGACGCC
TCGCAAGATTTTCCCAAAGGTGGAGAATAGGGCCAAGGAGACCTCGTCCG
TGTGTGTTTGTTTTGGTTTTGAAGACTGTGGTAAAGAACATGTGAGGTTT
GATCGTCTCGAGGCGCAATTTTTGGTAGGTTGTGGTTTGTATATTATTGT
TCCTGGTGGACGAATTCCAACGAAAACACCCTCTACAAACACGCAAATTA
TAAAACTGACGAGGATTACTGAAATTTGATTGGCCAAAAAACACCGCCTG
CAACAGGCGTGCGCTGCCCCTCAGCACGGAGTCGAGAGATCCCCGAAGCG
TGCCCGCACCAAATCCACTGTGTTGCCAGCCACAGTCCCACCGTTGGCAG
TGGATGAAGTACCGGCACCATACTCGGGAAACTCGGGGCTGATGCAGGCA
TCCTTCGGGGATATACTTACTCCGTCTGCCATAGTTTGCTGGCTGCGCGC
ACCTCTCACACACTACTCCGTACTGAGGGCCAGCGCACTTCTATTGCGCG
CTCTGTTGTCGGGCAAATAAATTGTCCTTCGCTTCTCGTCAAAAGCATTT
GAGGAGCCACATCGGCCCCTCTTTCCCCCTTCTCTTTCGAAAAGGGATGA
TCCTCTTGTAAACCCTGGAATTCATGACGTGGTTTACCCTCTCCAGTTAT
TAACGCGACCCACTAGTTTTTGGGGGGTGACATAAAACCTCCCGGTTCTA
GCCGTTCACACGTGGCCCTTCCACACGGTAAACGCCTGCCCCTTTTCAAC
CCGGCTAAGGCATCGATCAACGAAAAGGACCCCCGCCCCCCTGGCCCCGG
ACATGTCCCGCACGGGGCCCCCTACAATCTGAGGTGGTGGATCCAGCGCA
GCTGCTGCGCAGCATGAATTTTTGCCACCCAGGGTATGCCCAAGCACAAA
ACCTTCAACCGACCACACCTCCCATATACCTCGAAACGCGCGCATCTTGA
AGGGTACAACCCTGCCAAGTTCAGTAGCGCCTTGTCCACGTCTACCGCGC
TTAGTTTTCTCGTAGTATCGTGCCGCCTTGTTTTTAGTGCAAAACTATGC
GACCGTTATGTATATGGTTGAAACTCTGGGATACAGAGGTTTTTCTACTT
GACTACAGCGTTAAGAAGGAAGGAACCACTAATATATGTGTATGTTCCCT
TGTGGCGGATGGGAAGCAAGCGGTCGCTGTTTTTCTAGGGATACATCTTC
TTATTTTCCCTCGAATCTCTACTGTCATGCCCTCGCGCTTCTTGACCCAT
GGTTCTCCCATCCACGTGAAAATGTACTTTTACCTTGCCCCCCAATTCCA
TCTCCACCCTCTACTTGAAGTGGTACAAGTATATGAGACGAGTAACTACT
GGTAAATACCTGATTGATCGAACGCCTATCCGCTTCTTGACTACATGTCT
TACCCACACATACACACACACACACCCATCGAGCCACCGACCAATCTACA
CATGCATCCCTGATGCCCCGTGCCCATTGACAGCTATATATCACTGACCG
ATACCTTCTAACCCCCACCCCTCCGCCTCCTCCCTTAAAGATCCGACATC
TCTCGAGGTATTGATGTCGTTTCACACTCTGGCCGAGGGCGCGTATCCCC
AGTCTGTCAACGGCGCCCATTTTTCGCCGCAGCTTTTCAAGGCCGATCCC
GCGGGTGGGATCCTCTCTCGAGACTACTATCGGGAGTTCTACGCTGAGGC
GTTCGTTGGGGGCCAGGTGTGCGAATAACATCGAGAATACTAATGATTTT
GAGCGCAAGATGGCGAAGGCGGGGGGTAGAGAAGGGTGAAATCATCGTGT
CGGCGGTCCCGCCGTGCCAAGCGCGCTCACTGCTGCGTGTTTTCGCGGTG
TCTCGTCCTGGTAGTGTTAATATAAGAAGGCGTTTTTGGAAGTCCGAGAG
CCACCTAACCGTCGGTTGTAGGGAGCGGGACCATTCGTAAATTGTGCCGA
TTGGACTCTTCTGTGAGTGAGTTGCATGGCGTGCAACCGACTCTGGGCCC
CTTCTACTTCAACCGATTCACCTCGGAACCGTACACGTTCCCCCAAAGTT
TTTGCCTTTCTAGGAAAAAATCGCTTATCTGGTACGTCAACTAATGCTTC
CTCCCCCCCCCAAAAAAACTCTTGAGTGACACCAATGCCTACGGAGTGAT
GAATGACTGTGATACTTTTCTTGGTGGATTTGAAGCTGATTCGTCTCTCT
TAAATAGAAAAATCCCGCACTCGGATTTGGCTTCTTGTTTCGTTTTTCAT
TTTTTAGGAGGTTTCTATCATGCTTAATCGACTGCGTCCGCGATTCCCGT
ATCGAAAACGCCGCCTCTCCTCCCTACCTTATTTTGATTTGTTTTTTAAG
GTTACTTCCCTGGCCGGTCCCCTTCTAAATGTGACTAGAGCGCCGACACC
TATCGATGCGTCATGGACATTCTGCCCGTCACTGCCGCTTCGAGCGCGTG
ACGACCTCGAGGATCGACAGGCAACTCAAGTACCAGAGACTCTGTCCGAG
CCGCAATCGCCGATGTTGTCTGACATTGCTGCTGATGTTGCTGCAACGGC
GAAAGCGGTCTCAGCGGCAGAGCGCGCCGCTTCCTCGCTGCTGATTGAGG
GAGTTCCCGTTTCCGAGACCGATATCACGGCCACAAACGGAGTAGTTCAC
CGTCTGTCGACCCGAGCGATTGCCGCGCCAGCGACGGCGGCCGGGGTACT
TTTGAACCCCCCGTTCCCGCTGTCCTCGGCAGGCAGTTTCGCGGCGATGG
GAGAGTTGTTGCGGCTGGCGTGGCCACTGGTGAACGGGACGCTCGCGGGC
GACGGACCCCTTACGGTGCTCGCTCCGACGGACGCGGTGAGTCTTGCGTC
ATGGTGTTGTTTGCTTGTTTGCCTCAGAGTTGCTGCTGCGGCTTCTGCAC
AAAAAGCACCCGCGGGATAAAAACTGCTCAGTAAATTAAGGGGTAGTCGT
TGCACTGTCTCCCTCTGCGCGCCTGTGGACACAACTGGAGCCGACAAGAG
GCATTTTTTCTACCGCAGGCATTGACCTACACCACCTTGCGTCGCACAAC
TTTTTCTACCGCAGGCATTAACCTACACCTTGCGTCGCACAACTGTTTGT
TTTTAGTATTATTAATTTTCCTCGCCGCGCCCAAGACGGTCGATCAATAG
GTTGTTTCTGTTTTCGTTTGTTTTTTTGTATATATTTTTATTCCAGTGTT
TTTCATTTTCGAAGTTTTGGTTTGGTTCTAGTTTTTGTATATTGCATATA
ATATGTTTCTTGCTTTTGTTGCTTATTCTTTGCTTTGTTAATGTTTTATT
TTTTAATTTCCTTATTCCGTTGTGGTGAAAACTATACTACATCTCCACCT
TCGATACTTAATTTCGTTTCTTTTCTCCGAGGACAGCGGGAACTACCCTT
CATTGTCACGCTGCCGCGCGCGGTGCAATGATCTTGATGACTATCCTCCA
ACCTCCAACCTCTCCCGTCCTCATTTCCGCGTCTCTCGACAGGCATTCGA
CTTGGCCATCGCCGCAGGGCAGTTACCGCCCCGCCCCTGGAACCCCTGGA
AACAATCAGCTTCCTCCTCCTCTCCGATCCTCACACCCGAC back to topCoding sequence (CDS) from alignment at H-elongata_contig12868:1286..5026- >mRNA_H-elongata_contig12868.2110.1 ID=mRNA_H-elongata_contig12868.2110.1|Name=mRNA_H-elongata_contig12868.2110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1860bp|location=Sequence derived from alignment at H-elongata_contig12868:1286..5026- (Himanthalia elongata Himel1 dioecious) GGCACGATATGGAAAACCCTTGAATCAGACCCTTCGTTTTCGAAGCTCGT GGCGGCGCTGGATGGGACCGCGCTGTCTCGAAGGCTGAACACGCTAGACA AGACCGCGCGCTACACCCTGTTTGCACCGGACGATGAAGCAATCGACGCC TCGCAAGATTTTCCCAAAGGGCACGATATGGAAAACCCTTGAATCAGACC CTTCGTTTTCGAAGCTCGTGGCGGCGCTGGATGGGACCGCGCTGTCTCGA AGGCTGAACACGCTAGACAAGACCGCGCGCTACACCCTGTTTGCACCGGA CGATGAAGCAATCGACGCCTCGCAAGATTTTCCCAAAGATCCGACATCTC TCGAGGTATTGATGTCGTTTCACACTCTGGCCGAGGGCGCGTATCCCCAG TCTGTCAACGGCGCCCATTTTTCGCCGCAGCTTTTCAAGGCCGATCCCGC GGGTGGGATCCTCTCTCGAGACTACTATCGGGAGTTCTACGCTGAGGCGT TCGTTGGGGGCCAGATCCGACATCTCTCGAGGTATTGATGTCGTTTCACA CTCTGGCCGAGGGCGCGTATCCCCAGTCTGTCAACGGCGCCCATTTTTCG CCGCAGCTTTTCAAGGCCGATCCCGCGGGTGGGATCCTCTCTCGAGACTA CTATCGGGAGTTCTACGCTGAGGCGTTCGTTGGGGGCCAGGTTACTTCCC TGGCCGGTCCCCTTCTAAATGTGACTAGAGCGCCGACACCTATCGATGCG TCATGGACATTCTGCCCGTCACTGCCGCTTCGAGCGCGTGACGACCTCGA GGATCGACAGGCAACTCAAGTACCAGAGACTCTGTCCGAGCCGCAATCGC CGATGTTGTCTGACATTGCTGCTGATGTTGCTGCAACGGCGAAAGCGGTC TCAGCGGCAGAGCGCGCCGCTTCCTCGCTGCTGATTGAGGGAGTTCCCGT TTCCGAGACCGATATCACGGCCACAAACGGAGTAGTTCACCGTCTGTCGA CCCGAGCGATTGCCGCGCCAGCGACGGCGGCCGGGGTACTTTTGAACCCC CCGTTCCCGCTGTCCTCGGCAGGCAGTTTCGCGGCGATGGGAGAGTTGTT GCGGCTGGCGTGGCCACTGGTGAACGGGACGCTCGCGGGCGACGGACCCC TTACGGTGCTCGCTCCGACGGACGCGGTTACTTCCCTGGCCGGTCCCCTT CTAAATGTGACTAGAGCGCCGACACCTATCGATGCGTCATGGACATTCTG CCCGTCACTGCCGCTTCGAGCGCGTGACGACCTCGAGGATCGACAGGCAA CTCAAGTACCAGAGACTCTGTCCGAGCCGCAATCGCCGATGTTGTCTGAC ATTGCTGCTGATGTTGCTGCAACGGCGAAAGCGGTCTCAGCGGCAGAGCG CGCCGCTTCCTCGCTGCTGATTGAGGGAGTTCCCGTTTCCGAGACCGATA TCACGGCCACAAACGGAGTAGTTCACCGTCTGTCGACCCGAGCGATTGCC GCGCCAGCGACGGCGGCCGGGGTACTTTTGAACCCCCCGTTCCCGCTGTC CTCGGCAGGCAGTTTCGCGGCGATGGGAGAGTTGTTGCGGCTGGCGTGGC CACTGGTGAACGGGACGCTCGCGGGCGACGGACCCCTTACGGTGCTCGCT CCGACGGACGCGGCATTCGACTTGGCCATCGCCGCAGGGCAGTTACCGCC CCGCCCCTGGAACCCCTGGAAACAATCAGCTTCCTCCTCCTCTCCGATCC TCACACCCGACGCATTCGACTTGGCCATCGCCGCAGGGCAGTTACCGCCC CGCCCCTGGAACCCCTGGAAACAATCAGCTTCCTCCTCCTCTCCGATCCT CACACCCGAC back to top
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