mRNA_H-elongata_contig128605.2103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128605.2103.1
Unique NamemRNA_H-elongata_contig128605.2103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128605.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128605contigH-elongata_contig128605:1054..1580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.2271318-CDS-H-elongata_contig128605:1053..12571622929764.2271318-CDS-H-elongata_contig128605:1053..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128605 1054..1257 +
1691679148.6325922-CDS-H-elongata_contig128605:1053..12571691679148.6325922-CDS-H-elongata_contig128605:1053..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128605 1054..1257 +
1622929764.240263-CDS-H-elongata_contig128605:1468..15791622929764.240263-CDS-H-elongata_contig128605:1468..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128605 1469..1579 +
1691679148.6405752-CDS-H-elongata_contig128605:1468..15791691679148.6405752-CDS-H-elongata_contig128605:1468..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128605 1469..1579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128605.2103.1prot_H-elongata_contig128605.2103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128605 1054..1579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128605.2103.1

>prot_H-elongata_contig128605.2103.1 ID=prot_H-elongata_contig128605.2103.1|Name=mRNA_H-elongata_contig128605.2103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
SKQQTAGTLVVQAFGHREGRAVWGALRFVISTVWHLLEEFRELSWKARVM
CPKHEETLHFLAGAKDSEGRSPGDPIIRPGAIQHCSYQQEVASRLGTVLP
PWSPL
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mRNA from alignment at H-elongata_contig128605:1054..1580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128605.2103.1 ID=mRNA_H-elongata_contig128605.2103.1|Name=mRNA_H-elongata_contig128605.2103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at H-elongata_contig128605:1054..1580+ (Himanthalia elongata Himel1 dioecious)
TCAAAACAACAGACGGCGGGAACTCTGGTGGTTCAGGCTTTTGGACACAG
AGAGGGCCGTGCAGTGTGGGGGGCTCTTCGCTTCGTAATCTCTACTGTGT
GGCATCTTCTTGAAGAGTTCCGCGAGCTCTCTTGGAAAGCCCGGGTGATG
TGTCCAAAGCACGAGGAGACATTGCACTTCCTTGCTGGTGCCAAGGATAG
CGAGGTCCGTGTAACAGCTTCGTTGTTTGGACTTCAGATCTTGCGATCGC
TTTTCGTCACACCTGCCTGCAGTAGGGCGGTGCGCGGAATATTACGGAAC
TAATTTATGTAAAGTTTATTAGATTTAATCCTCAAAATGTGTGACCAACA
CACACTCAACGCCCGCGACCTCGGTATTTGTGGTCGGATTAATAATCTAA
TTCGTGGTATCTCAGGGAAGATCTCCAGGTGATCCGATTATACGGCCAGG
GGCCATCCAGCATTGTTCGTATCAGCAAGAGGTGGCATCACGCTTAGGGA
CAGTGCTGCCGCCTTGGTCACCGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig128605:1054..1580+

>mRNA_H-elongata_contig128605.2103.1 ID=mRNA_H-elongata_contig128605.2103.1|Name=mRNA_H-elongata_contig128605.2103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig128605:1054..1580+ (Himanthalia elongata Himel1 dioecious)
TCAAAACAACAGACGGCGGGAACTCTGGTGGTTCAGGCTTTTGGACACAG
AGAGGGCCGTGCAGTGTGGGGGGCTCTTCGCTTCGTAATCTCTACTGTGT
GGCATCTTCTTGAAGAGTTCCGCGAGCTCTCTTGGAAAGCCCGGGTGATG
TGTCCAAAGCACGAGGAGACATTGCACTTCCTTGCTGGTGCCAAGGATAG
CGAGTCAAAACAACAGACGGCGGGAACTCTGGTGGTTCAGGCTTTTGGAC
ACAGAGAGGGCCGTGCAGTGTGGGGGGCTCTTCGCTTCGTAATCTCTACT
GTGTGGCATCTTCTTGAAGAGTTCCGCGAGCTCTCTTGGAAAGCCCGGGT
GATGTGTCCAAAGCACGAGGAGACATTGCACTTCCTTGCTGGTGCCAAGG
ATAGCGAGGGAAGATCTCCAGGTGATCCGATTATACGGCCAGGGGCCATC
CAGCATTGTTCGTATCAGCAAGAGGTGGCATCACGCTTAGGGACAGTGCT
GCCGCCTTGGTCACCGTTAGGAAGATCTCCAGGTGATCCGATTATACGGC
CAGGGGCCATCCAGCATTGTTCGTATCAGCAAGAGGTGGCATCACGCTTA
GGGACAGTGCTGCCGCCTTGGTCACCGTTA
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