mRNA_H-elongata_contig128588.2102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128588.2102.1
Unique NamemRNA_H-elongata_contig128588.2102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.750e-13
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:    7 KAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHPISYLLSNNHPITRSPDLDTLIKTRSKSVEAIMRRRWVLFAEFVARMDVTKL 303
            +AEV+ET+LY CVT + +   Y  L   HH FL RCIGW+K  R D P+SY  +    IT   D         +SVEA +R+R + FA FVARM   +L
Sbjct:  179 QAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKA---LITAGCD---------ESVEATVRKRRLCFAGFVARMRDERL 265
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BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: A0A6H5KDF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDF9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.580e-10
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    7 KAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHPISYLLSNNHPITRSPDLDTLIKTRSKS-VEAIMRRRWVLFAEFVARMDVTKLGAR 312
            +AEV+ET+LY C + S  A HY  L   H +FLTRCI   K  R+D P+ Y                LI+   +  +EA +R+R + FA+FV RM+ ++L  R
Sbjct:   17 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIDRSKRKRSDRPLCYA-------------QALIQAGCEEPIEATVRKRGLCFADFVMRMEDSRLPKR 106
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BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: A0A6H5KCA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.960e-10
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    7 KAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHPISY 159
            +AEV+ET+LY C + S  A HY  L   H +FLTRCIGW K  R+DHP+SY
Sbjct:   17 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDHPLSY 67
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BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: A0A6H5KQK1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.380e-10
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    7 KAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHPISY 159
            +AEV+ET+LY C + S  A HY  L   H +FLTRCIGW K  R+DHP+SY
Sbjct:  296 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDHPLSY 346
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BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-9
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:    1 MPKAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHP-ISYLLSNNHPITRSPDLDTLIKTRSKSVEAIMRRRWVLFAEFVARMDVTKLGAR 312
            M KAEV+ET+LY CVT +  A H+  L   HH  L R IG+Q+  RTDH  +SY  +             L  TR +S+E  +R+R + FA  V R    +L +R
Sbjct:    1 MLKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKA-------------LRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSR 92
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BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: A0A6H5L747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L747_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.560e-9
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    7 KAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHPISY 159
            +AEV+ET+LY CV+ S  A HY  L   H +FLTRCIGW    R+D P+SY
Sbjct:   17 QAEVVETLLYGCVSWSLTAEHYTKLNGTHRQFLTRCIGWSTRKRSDRPLSY 67
[Close]
BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.630e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    7 KAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHPISY 159
            +AEV+ET+L+ C + S  A H+  L   H +FLTRCIGW K  R+D P+SY
Sbjct:   17 QAEVVETLLHGCASWSLTAEHHTKLNGTHRQFLTRCIGWSKQKRSDRPLSY 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128588.2102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE5.750e-1344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDF9_9PHAE2.580e-1037.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCA6_9PHAE5.960e-1056.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQK1_9PHAE6.380e-1056.86Reverse transcriptase domain-containing protein n=... [more]
UPI001AA1A1FE1.820e-939.05hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5L747_9PHAE4.560e-954.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK9_9PHAE6.630e-850.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128588contigH-elongata_contig128588:1471..1842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.1773362-CDS-H-elongata_contig128588:1470..18421622929764.1773362-CDS-H-elongata_contig128588:1470..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128588 1471..1842 +
1691679148.6234164-CDS-H-elongata_contig128588:1470..18421691679148.6234164-CDS-H-elongata_contig128588:1470..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128588 1471..1842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128588.2102.1prot_H-elongata_contig128588.2102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128588 1471..1842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128588.2102.1

>prot_H-elongata_contig128588.2102.1 ID=prot_H-elongata_contig128588.2102.1|Name=mRNA_H-elongata_contig128588.2102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MPKAEVLETVLYNCVTSSPRACHYDTLLRPHHRFLTRCIGWQKNNRTDHP
ISYLLSNNHPITRSPDLDTLIKTRSKSVEAIMRRRWVLFAEFVARMDVTK
LGAREFTRTGVLETRNCKKRLLNP
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mRNA from alignment at H-elongata_contig128588:1471..1842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128588.2102.1 ID=mRNA_H-elongata_contig128588.2102.1|Name=mRNA_H-elongata_contig128588.2102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig128588:1471..1842+ (Himanthalia elongata Himel1 dioecious)
ATGCCGAAAGCCGAGGTACTCGAGACAGTGCTGTATAACTGCGTCACGTC
GAGCCCGCGCGCGTGTCACTACGACACGCTGCTTCGACCCCACCACCGTT
TTCTGACTCGCTGCATCGGTTGGCAAAAGAACAATCGCACCGATCACCCG
ATCTCCTATCTCCTAAGTAACAATCACCCGATCACCCGATCACCCGATCT
GGACACCCTCATAAAGACAAGAAGTAAGAGCGTCGAGGCGATCATGCGTA
GGAGGTGGGTTCTGTTCGCGGAATTTGTGGCGCGCATGGATGTCACGAAA
CTGGGCGCCCGTGAATTCACCCGTACAGGTGTACTCGAAACACGCAACTG
TAAAAAACGCCTACTGAACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig128588:1471..1842+

>mRNA_H-elongata_contig128588.2102.1 ID=mRNA_H-elongata_contig128588.2102.1|Name=mRNA_H-elongata_contig128588.2102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig128588:1471..1842+ (Himanthalia elongata Himel1 dioecious)
ATGCCGAAAGCCGAGGTACTCGAGACAGTGCTGTATAACTGCGTCACGTC
GAGCCCGCGCGCGTGTCACTACGACACGCTGCTTCGACCCCACCACCGTT
TTCTGACTCGCTGCATCGGTTGGCAAAAGAACAATCGCACCGATCACCCG
ATCTCCTATCTCCTAAGTAACAATCACCCGATCACCCGATCACCCGATCT
GGACACCCTCATAAAGACAAGAAGTAAGAGCGTCGAGGCGATCATGCGTA
GGAGGTGGGTTCTGTTCGCGGAATTTGTGGCGCGCATGGATGTCACGAAA
CTGGGCGCCCGTGAATTCACCCGTACAGGTGTACTCGAAACACGCAACTG
TAAAAAACGCCTACTGAACCCGATGCCGAAAGCCGAGGTACTCGAGACAG
TGCTGTATAACTGCGTCACGTCGAGCCCGCGCGCGTGTCACTACGACACG
CTGCTTCGACCCCACCACCGTTTTCTGACTCGCTGCATCGGTTGGCAAAA
GAACAATCGCACCGATCACCCGATCTCCTATCTCCTAAGTAACAATCACC
CGATCACCCGATCACCCGATCTGGACACCCTCATAAAGACAAGAAGTAAG
AGCGTCGAGGCGATCATGCGTAGGAGGTGGGTTCTGTTCGCGGAATTTGT
GGCGCGCATGGATGTCACGAAACTGGGCGCCCGTGAATTCACCCGTACAG
GTGTACTCGAAACACGCAACTGTAAAAAACGCCTACTGAACCCG
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