mRNA_H-elongata_contig128516.2099.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: D7FQ03_ECTSI (Elongation factor Ts, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ03_ECTSI) HSP 1 Score: 222 bits (566), Expect = 6.160e-69 Identity = 121/177 (68.36%), Postives = 146/177 (82.49%), Query Frame = 1
Query: 1 MISALKSRVANVAVQVLSLG-NGQGVVSGYVHGAVG-PGMGKNAALVALKLDAASAASD-ATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGEREP 522
++ A++ + V+SLG +G+GVV+GYVHGA G PGMGKNAALVALKLD +A D AT + LD+SAKSLAMH+VAARPAFLDE+SAP AL++EK LLL+QA ESGKDPK+L MV+GRLRKYLE NAL RQ+HMVAEGNPRVADHL LGE++GG VT+ GF+RL+VGEREP
Sbjct: 184 LVGAIRENITISRAHVVSLGGDGKGVVAGYVHGATGLPGMGKNAALVALKLDTTAAGEDTATTETLDASAKSLAMHVVAARPAFLDESSAPEAALEKEKKLLLEQAEESGKDPKVLGKMVEGRLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAVGEREP 360
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: A0A6H5KIL7_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL7_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.580e-34 Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 1
Query: 1 MISALKSRVANVAVQVLSLG-NGQGVVSGYVHGAVG-PGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGR 360
++ A++ + V+SLG +G+GVV+GYVHGA G PGMGKNAALVALKL AT + LD+SAKSLAMH+VAARPAFLDEASAP AL+ EK LLL+QA ESGKDPK+L MV+GR
Sbjct: 133 LVGAIRENITISRAHVVSLGGDGKGVVAGYVHGATGLPGMGKNAALVALKLGD----DTATTETLDASAKSLAMHVVAARPAFLDEASAPESALEEEKKLLLEQAEESGKDPKVLGKMVEGR 250
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: A0A835Z3H1_9STRA (Elongation factor Ts, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H1_9STRA) HSP 1 Score: 128 bits (322), Expect = 6.690e-33 Identity = 67/146 (45.89%), Postives = 98/146 (67.12%), Query Frame = 1
Query: 76 VSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGE 513
V YVHGAVG GMG+ AALVAL +D+ S + +V+ ++ K+LAMH VAARP FLD + P D L +E+ ++ Q ++SGK I+ MV+GR+ K+ + L+ Q HM+ EGNP+V H+ L +++GG V V GF+R ++GE
Sbjct: 175 VGAYVHGAVGEGMGRAAALVALDVDSGSGGGEHA-EVVAAAGKALAMHCVAARPRFLDRGAVPEDVLAKERGIVTGQVKDSGKPEAIVAKMVEGRMGKFFAEATLLGQPHMIEEGNPKVEAHMQALSKRIGGSVRVTGFARFAIGE 319
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: UPI001904E47C (translation elongation factor Ts n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI001904E47C) HSP 1 Score: 113 bits (283), Expect = 2.320e-27 Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 1
Query: 67 QGVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGEREPE 525
QG V+GYVH + P GK LVAL+ A A D L+++AK +AMH+ A PA + + P ++REK +L+DQARESGK I++ MV+GR+RK+ E+NAL+ Q+ +V +G R+ D L LG LG +TV G R +GE + +
Sbjct: 149 QGAVAGYVHNQLAPNQGKIGVLVALE---AGAGPDK----LEATAKQIAMHVAAVNPAAISQDQIDPQLVEREKQVLMDQARESGKPENIIEKMVEGRMRKFYEENALLDQTFVV-DGESRIGDVLNKLGTDLGTEITVTGMVRYQLGETQAD 293
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: A0A3M1JQ90_9PROT (Elongation factor Ts n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JQ90_9PROT) HSP 1 Score: 112 bits (280), Expect = 7.710e-27 Identity = 68/157 (43.31%), Postives = 97/157 (61.78%), Query Frame = 1
Query: 43 QVLSLGNGQGVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGE 513
+V SL GV+S Y+H V PG+GK LVALK SDA LD+ K +AMHI A P LD S P+A++RE+++L +QAR SGK +I++ MV+GRLRK+ E+ L++Q+ +V +G R+A L G++ G V + GF R +GE
Sbjct: 143 RVASLSVDNGVISSYIHNDVAPGLGKIGVLVALK-------SDAPADKLDALGKQIAMHIAAMSPQSLDVDSLDPEAIERERNVLSEQARASGKPEEIIEKMVEGRLRKFYEEVVLLQQTFVV-DGETRIAKLLEVKGKEFGSPVEITGFVRFGLGE 291
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: A0A3N1MD60_9PROT (Elongation factor Ts n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1MD60_9PROT) HSP 1 Score: 112 bits (279), Expect = 1.020e-26 Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 1
Query: 43 QVLSLGNGQGVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGE 513
+ L L QG+V+ YVH A PG+GK LVAL+ SA A ++ L + LAMH+ AA P FLD AS ALDRE+ +L +QAR SGK I+D MV+GRLRK+ E+ LV Q ++ +G RV+ + G+ +++G + + GF+R ++GE
Sbjct: 140 RALRLEVSQGIVASYVHNATAPGLGKIGVLVALE----SAGDTAKLEALG---RQLAMHVAAANPQFLDVASVDTTALDRERDVLREQARASGKAEAIIDKMVEGRLRKFYEETVLVEQVFVI-DGESRVSKIVEGVAKEIGQPIKLTGFARYALGE 288
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: A0A2D6FZ49_9PROT (Elongation factor Ts n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6FZ49_9PROT) HSP 1 Score: 109 bits (272), Expect = 1.100e-25 Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 1
Query: 70 GVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGE 513
GVV+ Y+H A+ PG+GK LVAL+ SD + L++ K LAMH+ AA P L +A P L RE+S+L +QARESGK +I++ MV GRLRKY E+ L+ Q+ ++ +G +VA + ++LG + VAGF R ++GE
Sbjct: 150 GVVATYMHNALKPGLGKIGVLVALE-------SDGDTEKLEAFGKQLAMHVAAANPRALSQADVDPAELKRERSVLSEQARESGKPEEIIEKMVDGRLRKYFEEICLLDQTFVI-DGESKVAKAVEAAAKELGAEINVAGFCRFALGE 289
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: A0A2E7F9K8_9PROT (Elongation factor Ts n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7F9K8_9PROT) HSP 1 Score: 108 bits (271), Expect = 1.550e-25 Identity = 60/148 (40.54%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 70 GVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGE 513
GVVS Y+H A+ PG+GK L+AL+ SDA + L++ K LAMH+ AA P + D L+REK++L +QARESGK I++ MV+GRLRKY E+ L+ Q++++ +G+ +V + + G+++G +T++ F R ++GE
Sbjct: 150 GVVSSYMHNALKPGLGKIGVLIALE-------SDADAEQLEALGKQLAMHVAAANPQAISRDDVDADDLEREKAILAEQARESGKPDDIIEKMVEGRLRKYYEEVCLLEQTYVI-DGDTKVGEVIEAAGKEVGAPITLSSFVRFALGE 289
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: UPI0004865F2E (translation elongation factor Ts n=1 Tax=Rhodovibrio salinarum TaxID=1087 RepID=UPI0004865F2E) HSP 1 Score: 108 bits (270), Expect = 1.870e-25 Identity = 65/153 (42.48%), Postives = 94/153 (61.44%), Query Frame = 1
Query: 67 QGVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGEREPE 525
QG V+GYVH + P GK L+AL+ A A D L+++AK +AMH+ A P + + P ++REK +L +QARESGK I++ MVQGR+RK+ E+NAL+ Q+ +V +G RV D L LG+ LG + V G +R +GE + E
Sbjct: 149 QGAVAGYVHNQLAPNQGKIGVLIALE---AGAGPDK----LEATAKQIAMHVAAVNPNAITQDDVDPALVEREKKVLEEQARESGKPENIIEKMVQGRMRKFYEENALLDQTFVV-DGESRVGDVLDKLGKDLGTEIKVTGMARYQLGETQAE 293
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Match: UPI00115E564D (translation elongation factor Ts n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115E564D) HSP 1 Score: 108 bits (270), Expect = 2.130e-25 Identity = 64/157 (40.76%), Postives = 101/157 (64.33%), Query Frame = 1
Query: 43 QVLSLGNGQGVVSGYVHGAVGPGMGKNAALVALKLDAASAASDATIKVLDSSAKSLAMHIVAARPAFLDEASAPPDALDREKSLLLDQARESGKDPKILDNMVQGRLRKYLEDNALVRQSHMVAEGNPRVADHLGGLGEKLGGRVTVAGFSRLSVGE 513
QVL +G QGV++ Y+H AV PG+GK LVAL+ S+ +A ++ + K +AMHI AA+P FLD +S DAL+RE+ +L +QA+ SGK +++ MV+GRLRKY E+ L+ Q ++ +G R+ + +++G V + GF+R+ +GE
Sbjct: 142 QVLEVG--QGVIASYIHNAVAPGLGKIGVLVALE----SSGDEAKLQEIG---KQIAMHIAAAQPQFLDTSSVDQDALNRERDVLTEQAKASGKPEEVIAKMVEGRLRKYYEEVVLLEQVFVI-DGETRIKKVIENAAKEVGAPVAITGFARVVLGE 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128516.2099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig128516.2099.1 >prot_H-elongata_contig128516.2099.1 ID=prot_H-elongata_contig128516.2099.1|Name=mRNA_H-elongata_contig128516.2099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp MISALKSRVANVAVQVLSLGNGQGVVSGYVHGAVGPGMGKNAALVALKLDback to top mRNA from alignment at H-elongata_contig128516:255..1470+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig128516.2099.1 ID=mRNA_H-elongata_contig128516.2099.1|Name=mRNA_H-elongata_contig128516.2099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1216bp|location=Sequence derived from alignment at H-elongata_contig128516:255..1470+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig128516:255..1470+ >mRNA_H-elongata_contig128516.2099.1 ID=mRNA_H-elongata_contig128516.2099.1|Name=mRNA_H-elongata_contig128516.2099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig128516:255..1470+ (Himanthalia elongata Himel1 dioecious)back to top |