mRNA_H-elongata_contig1285.2096.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1285.2096.1
Unique NamemRNA_H-elongata_contig1285.2096.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1285.2096.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 5.090e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 VVDDQKNPVFLAQRKIDLEGYLKEVAALVENQEPFFSLLCEALDL 135
            VV DQKN  FLA+RK+DLE YLKEVAALVE QEPFFSLL  ALDL
Sbjct:  655 VVQDQKNSAFLAKRKVDLEAYLKEVAALVETQEPFFSLLASALDL 699
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1285.2096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G911_ECTSI5.090e-1480.00LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1285contigH-elongata_contig1285:6157..6668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3e-11
Seed eggNOG ortholog2880.D7G911
KEGG koko:K04427,ko:K20717,ko:K20718
KEGG Pathwayko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1,2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.0182664-CDS-H-elongata_contig1285:6156..62311622929763.0182664-CDS-H-elongata_contig1285:6156..6231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1285 6157..6231 -
1691679148.3771224-CDS-H-elongata_contig1285:6156..62311691679148.3771224-CDS-H-elongata_contig1285:6156..6231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1285 6157..6231 -
1622929763.033548-CDS-H-elongata_contig1285:6596..66681622929763.033548-CDS-H-elongata_contig1285:6596..6668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1285 6597..6668 -
1691679148.391615-CDS-H-elongata_contig1285:6596..66681691679148.391615-CDS-H-elongata_contig1285:6596..6668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1285 6597..6668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1285.2096.1prot_H-elongata_contig1285.2096.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1285 6157..6668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1285.2096.1

>prot_H-elongata_contig1285.2096.1 ID=prot_H-elongata_contig1285.2096.1|Name=mRNA_H-elongata_contig1285.2096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
VVDDQKNPVFLAQRKIDLEGYLKEVAALVENQEPFFSLLCEALDLAIT*
back to top

mRNA from alignment at H-elongata_contig1285:6157..6668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1285.2096.1 ID=mRNA_H-elongata_contig1285.2096.1|Name=mRNA_H-elongata_contig1285.2096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=512bp|location=Sequence derived from alignment at H-elongata_contig1285:6157..6668- (Himanthalia elongata Himel1 dioecious)
GTTGTGGACGACCAAAAGAACCCTGTTTTCCTTGCACAGCGCAAGATAGA
TCTAGAGGGCTACTTGAAGGAGGTAAGCAAGACTCCCGGGGCATGTAGGC
TGCTGAGGACTCACGACGTCAAGCTAGCTACAGAGCTAAATGTTTTAATG
ATAAAATTGTCTAACATAAATGACTTAAATCGAAGAGCGAAATGTATAGA
TACACACTCATTTTCTGATTTTTCTCATCTTGCTCCTTGTTACCCTCTCT
CTCTAACCTATGAAGCTTGAAACCCGAGTTAGGCTTAAGTGAAGCGAATG
CAACCAACCAGTCTTGCTTAACGAATGGCGGGTCTTGTCTTTTGCGTCTT
GTAGCACAAAATGCTTTTTTTGACTGGTATAAAACATTAGTGGCTTCCCT
TTAGCGCTCGTCCCGTTTGTCGTGCACACCGACGCAGGTTGCCGCCCTAG
TAGAGAATCAAGAACCGTTCTTCAGCTTGCTGTGCGAGGCTTTGGACCTC
GCAATCACGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1285:6157..6668-

>mRNA_H-elongata_contig1285.2096.1 ID=mRNA_H-elongata_contig1285.2096.1|Name=mRNA_H-elongata_contig1285.2096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig1285:6157..6668- (Himanthalia elongata Himel1 dioecious)
GTTGTGGACGACCAAAAGAACCCTGTTTTCCTTGCACAGCGCAAGATAGA
TCTAGAGGGCTACTTGAAGGAGGTTGTGGACGACCAAAAGAACCCTGTTT
TCCTTGCACAGCGCAAGATAGATCTAGAGGGCTACTTGAAGGAGGTTGCC
GCCCTAGTAGAGAATCAAGAACCGTTCTTCAGCTTGCTGTGCGAGGCTTT
GGACCTCGCAATCACGTGAGTTGCCGCCCTAGTAGAGAATCAAGAACCGT
TCTTCAGCTTGCTGTGCGAGGCTTTGGACCTCGCAATCACGTGA
back to top