mRNA_H-elongata_contig128475.2093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128475.2093.1
Unique NamemRNA_H-elongata_contig128475.2093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A6H5L2M1_9PHAE (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.580e-31
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            EGNEEVL+ALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRD AL AI++V
Sbjct:  489 EGNEEVLVALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALSAIEKV 550
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BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A7S1ZYZ0_9STRA (Isoleucine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZYZ0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.400e-24
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            EGNEEV+ AL+E G LL  E Y HKYPYDWRTKKPTIFRATDQWFASV+ FRDAAL AID V
Sbjct:  455 EGNEEVVTALQETGSLLRAEDYGHKYPYDWRTKKPTIFRATDQWFASVEGFRDAALDAIDTV 516
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BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A7S2XYB8_9STRA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.950e-24
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            +GN EV+ ALEE G LL  E Y HKYPYDWRTKKPTIFRATDQWFASVD FRD A+ AID+V
Sbjct:  208 DGNTEVIAALEEKGSLLLGEDYNHKYPYDWRTKKPTIFRATDQWFASVDSFRDDAMAAIDKV 269
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BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A0G4HKH4_9ALVE (Isoleucine--tRNA ligase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKH4_9ALVE)

HSP 1 Score: 102 bits (255), Expect = 4.860e-24
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            +GNEE + AL EAG LL  EAY HKYPYDWRTKKPTIFRATDQWFASVD FRD A  AID +
Sbjct:  489 DGNEECVQALTEAGALLLEEAYSHKYPYDWRTKKPTIFRATDQWFASVDAFRDRAFEAIDSI 550
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BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A1X6NSU2_PORUM (Isoleucine--tRNA ligase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSU2_PORUM)

HSP 1 Score: 101 bits (251), Expect = 1.690e-23
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            EGN+ VL AL EAG LLA EAY HKYPYDWR+KKPTIFRATDQWFAS+D FR A L A+D V
Sbjct:  519 EGNQAVLDALAEAGALLAEEAYPHKYPYDWRSKKPTIFRATDQWFASIDGFRGAVLDAVDTV 580
[Close]
BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A2D2Q1A4_THELV (Isoleucine--tRNA ligase n=1 Tax=Synechococcus lividus PCC 6715 TaxID=1917166 RepID=A0A2D2Q1A4_THELV)

HSP 1 Score: 100 bits (250), Expect = 2.300e-23
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            EGNE V++ALE AG LL  E Y HKYPYDWRTKKPTIFRAT+QWFASV  FRDAAL AI EV
Sbjct:  386 EGNEAVIVALEAAGALLKEEPYVHKYPYDWRTKKPTIFRATEQWFASVAGFRDAALAAIAEV 447
[Close]
BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: L1JBT3_GUITC (Isoleucine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBT3_GUITC)

HSP 1 Score: 100 bits (250), Expect = 2.300e-23
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            +GNE VL  +EEAG L+  E Y HKYPYDWRTKKPTIFRATDQWFASV+ FR+ A+GAID V
Sbjct:  400 DGNERVLELMEEAGALIKEEEYGHKYPYDWRTKKPTIFRATDQWFASVENFREKAMGAIDTV 461
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BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A0G4EG48_VITBC (Isoleucine--tRNA ligase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EG48_VITBC)

HSP 1 Score: 100 bits (249), Expect = 3.150e-23
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            EGNE ++ AL+E G LL  E Y H+YPYDWRTKKPTIFRAT+QWF SVD FR+AAL AIDEV
Sbjct:  535 EGNEAIIQALDECGSLLKAEDYPHRYPYDWRTKKPTIFRATEQWFISVDAFREAALAAIDEV 596
[Close]
BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A7S0LI09_9EUKA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LI09_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 4.290e-23
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            +GN  V+ AL+EAG LLA E Y HKYPYDWRTKKPTIFRAT QWFASVD FRD AL AI+ V
Sbjct:  427 DGNTAVITALQEAGALLASEGYAHKYPYDWRTKKPTIFRATSQWFASVDAFRDDALSAIESV 488
[Close]
BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Match: A0A3N5IE16_9CHRO (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Chroococcales cyanobacterium metabat2.561 TaxID=2485785 RepID=A0A3N5IE16_9CHRO)

HSP 1 Score: 99.4 bits (246), Expect = 7.160e-23
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDAALGAIDEV 186
            + NE ++LAL E G LL  EAYQHKYPYDWRTKKPTIFRAT+QWFASV+ FR+ AL AID V
Sbjct:  379 DANEAIILALTEKGALLKEEAYQHKYPYDWRTKKPTIFRATEQWFASVEGFRELALEAIDSV 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128475.2093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2M1_9PHAE4.580e-3191.94Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1ZYZ0_9STRA1.400e-2479.03Isoleucine--tRNA ligase n=1 Tax=Ditylum brightwell... [more]
A0A7S2XYB8_9STRA1.950e-2475.81Isoleucine--tRNA ligase (Fragment) n=1 Tax=Fibroca... [more]
A0A0G4HKH4_9ALVE4.860e-2475.81Isoleucine--tRNA ligase n=1 Tax=Chromera velia CCM... [more]
A0A1X6NSU2_PORUM1.690e-2375.81Isoleucine--tRNA ligase n=1 Tax=Porphyra umbilical... [more]
A0A2D2Q1A4_THELV2.300e-2377.42Isoleucine--tRNA ligase n=1 Tax=Synechococcus livi... [more]
L1JBT3_GUITC2.300e-2372.58Isoleucine--tRNA ligase n=1 Tax=Guillardia theta (... [more]
A0A0G4EG48_VITBC3.150e-2372.58Isoleucine--tRNA ligase n=2 Tax=Vitrella brassicaf... [more]
A0A7S0LI09_9EUKA4.290e-2374.19Isoleucine--tRNA ligase (Fragment) n=1 Tax=Coccoli... [more]
A0A3N5IE16_9CHRO7.160e-2372.58Isoleucine--tRNA ligase (Fragment) n=1 Tax=Chrooco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128475contigH-elongata_contig128475:1407..1595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5e-19
Seed eggNOG ortholog55529.EKX45579
Preferred nameISM1
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K18171
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0070127,GO:0070152,GO:0071704,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.isoleucyl-tRNA aminoacylation
EggNOG OGsCOG0060@1,KOG0433@2759
EC6.1.1.5
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.8188434-CDS-H-elongata_contig128475:1406..15951622929762.8188434-CDS-H-elongata_contig128475:1406..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128475 1407..1595 +
1691679148.316582-CDS-H-elongata_contig128475:1406..15951691679148.316582-CDS-H-elongata_contig128475:1406..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128475 1407..1595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128475.2093.1prot_H-elongata_contig128475.2093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128475 1407..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128475.2093.1

>prot_H-elongata_contig128475.2093.1 ID=prot_H-elongata_contig128475.2093.1|Name=mRNA_H-elongata_contig128475.2093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
EGNEEVLLALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDR
FRDAALGAIDEV*
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mRNA from alignment at H-elongata_contig128475:1407..1595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128475.2093.1 ID=mRNA_H-elongata_contig128475.2093.1|Name=mRNA_H-elongata_contig128475.2093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig128475:1407..1595+ (Himanthalia elongata Himel1 dioecious)
GAGGGCAACGAGGAAGTCTTGCTGGCGCTGGAAGAAGCGGGGGGTCTCCT
CGCCAGGGAGGCGTACCAGCACAAGTACCCATACGACTGGAGGACGAAGA
AACCGACGATCTTCCGCGCCACCGACCAGTGGTTCGCTTCGGTCGATCGC
TTCAGGGACGCGGCCCTGGGCGCTATCGATGAGGTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig128475:1407..1595+

>mRNA_H-elongata_contig128475.2093.1 ID=mRNA_H-elongata_contig128475.2093.1|Name=mRNA_H-elongata_contig128475.2093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig128475:1407..1595+ (Himanthalia elongata Himel1 dioecious)
GAGGGCAACGAGGAAGTCTTGCTGGCGCTGGAAGAAGCGGGGGGTCTCCT
CGCCAGGGAGGCGTACCAGCACAAGTACCCATACGACTGGAGGACGAAGA
AACCGACGATCTTCCGCGCCACCGACCAGTGGTTCGCTTCGGTCGATCGC
TTCAGGGACGCGGCCCTGGGCGCTATCGATGAGGTGTAAGAGGGCAACGA
GGAAGTCTTGCTGGCGCTGGAAGAAGCGGGGGGTCTCCTCGCCAGGGAGG
CGTACCAGCACAAGTACCCATACGACTGGAGGACGAAGAAACCGACGATC
TTCCGCGCCACCGACCAGTGGTTCGCTTCGGTCGATCGCTTCAGGGACGC
GGCCCTGGGCGCTATCGATGAGGTGTAA
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