mRNA_H-elongata_contig128439.2091.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128439.2091.1
Unique NamemRNA_H-elongata_contig128439.2091.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.170e-14
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 117
            VERIGP+HQAGSDSLLTEQVFLKVADV+FNGV NLD+GK
Sbjct:  263 VERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDQGK 301
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.230e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 117
            VERIGP+HQAGSDSLLTEQVFLKVADV+FNGV NLD GK
Sbjct:  266 VERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDLGK 304
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 117
            VERIG  HQAGSDSLLT QVF K+ D  FNG+ NL + K
Sbjct:  236 VERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREK 274
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.930e-7
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 117
            VERIG  HQAGSDSLLT QVF K+ +  FNG+ NL + K
Sbjct:  239 VERIGQKHQAGSDSLLTAQVFFKIVETKFNGMSNLSREK 277
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A9SJM0_PHYPA (Poly(A)-specific ribonuclease n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SJM0_PHYPA)

HSP 1 Score: 49.7 bits (117), Expect = 7.970e-6
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNG 93
            VERIGP HQAGSDSLLT + F K+ D FFNG
Sbjct:  223 VERIGPCHQAGSDSLLTSRTFRKLKDGFFNG 253
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A9BKZ7_HEMAN (Poly(A)-specific ribonuclease n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BKZ7_HEMAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.120e-5
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNG 93
            V RIGP+HQAGSDSLLT +VF K+ D FF G
Sbjct:  209 VSRIGPVHQAGSDSLLTLKVFFKLRDTFFKG 239
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: I0Z461_COCSC (Poly(A)-specific ribonuclease n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z461_COCSC)

HSP 1 Score: 48.9 bits (115), Expect = 1.540e-5
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDK 111
            VERIGP HQAGSDSLLT + F K+ D  FNG+  + K
Sbjct:  227 VERIGPQHQAGSDSLLTSKTFHKLIDTLFNGIDGVLK 263
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A7S0YUJ2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YUJ2_9CRYP)

HSP 1 Score: 48.1 bits (113), Expect = 1.760e-5
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNG 93
            V RIGP+HQAGSD+LLT +VF K+ D FF G
Sbjct:  105 VSRIGPVHQAGSDALLTLKVFFKLRDAFFKG 135
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: K8YSH1_NANGC (Poly(A)-specific ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSH1_NANGC)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 117
            V R+GP+HQAGSDSLLT Q F ++  V F+G+ NL   K
Sbjct:  393 VARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEK 431
[Close]
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: W7TF71_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF71_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 117
            V R+GP+HQAGSDSLLT Q F ++  V F+G+ NL   K
Sbjct:  240 VARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEK 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LIU5_ECTSI1.170e-1489.74Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A6H5JI77_9PHAE3.230e-1489.74Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A836C813_9STRA1.980e-766.67Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A835Z498_9STRA6.930e-764.10Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A9SJM0_PHYPA7.970e-674.19Poly(A)-specific ribonuclease n=2 Tax=Physcomitriu... [more]
A9BKZ7_HEMAN1.120e-570.97Poly(A)-specific ribonuclease n=1 Tax=Hemiselmis a... [more]
I0Z461_COCSC1.540e-562.16Poly(A)-specific ribonuclease n=2 Tax=Coccomyxa Ta... [more]
A0A7S0YUJ2_9CRYP1.760e-567.74Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
K8YSH1_NANGC2.180e-556.41Poly(A)-specific ribonuclease n=2 Tax=Monodopsidac... [more]
W7TF71_9STRA2.180e-556.41Poly(A)-specific ribonuclease n=1 Tax=Nannochlorop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128439contigH-elongata_contig128439:1566..1869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D8LIU5
Preferred nameCNOT8
KEGG koko:K12581
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000122,GO:0000175,GO:0000278,GO:0000288,GO:0000289,GO:0000290,GO:0000291,GO:0000932,GO:0000956,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001932,GO:0001959,GO:0001960,GO:0002252,GO:0002376,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004535,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005937,GO:0005975,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008285,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0018130,GO:0018995,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030014,GO:0030015,GO:0030154,GO:0030330,GO:0030427,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0033962,GO:0034243,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035194,GO:0035195,GO:0035556,GO:0035770,GO:0036464,GO:0040029,GO:0042025,GO:0042127,GO:0042325,GO:0042509,GO:0042770,GO:0042995,GO:0043167,GO:0043169,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043332,GO:0043656,GO:0043657,GO:0043900,GO:0043902,GO:0043903,GO:0043928,GO:0043933,GO:0044085,GO:0044094,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045069,GO:0045070,GO:0045088,GO:0045495,GO:0045786,GO:0045787,GO:0045824,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045944,GO:0046425,GO:0046483,GO:0046700,GO:0046872,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050730,GO:0050776,GO:0050777,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051286,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060211,GO:0060213,GO:0060255,GO:0060293,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0061013,GO:0061014,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071156,GO:0071158,GO:0071704,GO:0071826,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0075341,GO:0080090,GO:0080134,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0120025,GO:0120038,GO:0140098,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903900,GO:1903902,GO:1904892,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsCOG5228@1,KOG0304@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.6730647-CDS-H-elongata_contig128439:1565..16221622929762.6730647-CDS-H-elongata_contig128439:1565..1622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128439 1566..1622 +
1691679148.2756264-CDS-H-elongata_contig128439:1565..16221691679148.2756264-CDS-H-elongata_contig128439:1565..1622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128439 1566..1622 +
1622929762.6882153-CDS-H-elongata_contig128439:1809..18691622929762.6882153-CDS-H-elongata_contig128439:1809..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128439 1810..1869 +
1691679148.2852826-CDS-H-elongata_contig128439:1809..18691691679148.2852826-CDS-H-elongata_contig128439:1809..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128439 1810..1869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128439.2091.1prot_H-elongata_contig128439.2091.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128439 1566..1869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128439.2091.1

>prot_H-elongata_contig128439.2091.1 ID=prot_H-elongata_contig128439.2091.1|Name=mRNA_H-elongata_contig128439.2091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK
back to top

mRNA from alignment at H-elongata_contig128439:1566..1869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128439.2091.1 ID=mRNA_H-elongata_contig128439.2091.1|Name=mRNA_H-elongata_contig128439.2091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=304bp|location=Sequence derived from alignment at H-elongata_contig128439:1566..1869+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCGAATCGGCCCTATCCACCAGGCGGGTAGCGATAGTCTTCTAAC
AGAGCAGGTAAGACATCGGGGAAGGACATGTACTGTACTGCGGTGTACTA
TACATATTATATATATATATATATATATATAAGAGGGGCGGCCACATAAT
TTATCTAGGAAACCCGCGGATGAAACACCTCTCGCCGACTGAGTAGCTCA
GCCCCTCATCCCATGCTTGCACCCCCTCTCATAAAAATCTTCAGGTTTTC
CTAAAAGTTGCCGACGTGTTCTTTAACGGGGTTGGAAACCTCGACAAGGG
AAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig128439:1566..1869+

>mRNA_H-elongata_contig128439.2091.1 ID=mRNA_H-elongata_contig128439.2091.1|Name=mRNA_H-elongata_contig128439.2091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig128439:1566..1869+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCGAATCGGCCCTATCCACCAGGCGGGTAGCGATAGTCTTCTAAC
AGAGCAGGTGGAGCGAATCGGCCCTATCCACCAGGCGGGTAGCGATAGTC
TTCTAACAGAGCAGGTTTTCCTAAAAGTTGCCGACGTGTTCTTTAACGGG
GTTGGAAACCTCGACAAGGGAAAGGTTTTCCTAAAAGTTGCCGACGTGTT
CTTTAACGGGGTTGGAAACCTCGACAAGGGAAAG
back to top