mRNA_H-elongata_contig128327.2087.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128327.2087.1
Unique NamemRNA_H-elongata_contig128327.2087.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: D8LNT0_ECTSI (Ribosomal protein L15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT0_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.280e-45
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEVGTKTP 252
            +QGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKF NMRVLNSYW+NQDATFKY+EV T  P
Sbjct:   56 KQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWVNQDATFKYYEVITVDP 137
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: A0A485KI84_9STRA (Ribosomal protein L15 n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KI84_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.200e-39
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY  VRVAVRRGGRKRPN+KGIVYGKPKHHGIN++K VRNLRS+AEER GA+F N+RVLNSYW+NQDAT+KYFEV
Sbjct:   56 KQGYVAVRVAVRRGGRKRPNSKGIVYGKPKHHGINQLKDVRNLRSIAEERAGARFTNLRVLNSYWVNQDATYKYFEV 132
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: F0WIA3_9STRA (Ribosomal protein L15 n=2 Tax=Albugo TaxID=65356 RepID=F0WIA3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.740e-38
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY +VR AVRRGGRKRPN+KGIVYGKPKHHGIN++K  RNLRSVAEER GA+F N+RVLNSYWINQDAT+KYFEV
Sbjct:   56 KQGYVIVRAAVRRGGRKRPNSKGIVYGKPKHHGINQLKFARNLRSVAEERAGARFTNLRVLNSYWINQDATYKYFEV 132
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: K3WHU9_GLOUD (Ribosomal protein L15 n=26 Tax=Oomycota TaxID=4762 RepID=K3WHU9_GLOUD)

HSP 1 Score: 133 bits (335), Expect = 1.370e-37
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY + RVAVRRGGRKRPN+KGIVYGKPKHHGIN++K  RNLRSVAEER G KF N+RVLNSYW+NQDAT+KYFEV
Sbjct:   56 KQGYVVARVAVRRGGRKRPNSKGIVYGKPKHHGINQLKFERNLRSVAEERAGNKFTNLRVLNSYWVNQDATYKYFEV 132
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: A0A7S1UIX1_9STRA (Ribosomal protein L15 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIX1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.220e-36
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGYT+VRVAVRRGGRKRPN KGIV+GKPKHHGIN +K  RNL+SVAEER G K AN+RVLNSYW+NQDAT+KY+EV
Sbjct:   56 KQGYTIVRVAVRRGGRKRPNNKGIVFGKPKHHGINHLKFARNLQSVAEERAGRKAANLRVLNSYWVNQDATYKYYEV 132
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: A0A2D4BT83_PYTIN (Ribosomal protein L15 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT83_PYTIN)

HSP 1 Score: 130 bits (326), Expect = 3.150e-36
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY +VR AVRRGGRKR NAKGIVYGKP H GIN++KA RNLRS+AEER G KFAN+RVLNSYW+NQDAT+KYFE+
Sbjct:   56 KQGYVVVRAAVRRGGRKRQNAKGIVYGKPSHQGINQLKAERNLRSIAEERAGRKFANLRVLNSYWVNQDATYKYFEI 132
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: A0A482T0Y2_9ARCH (50S ribosomal protein L15e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0Y2_9ARCH)

HSP 1 Score: 125 bits (313), Expect = 1.630e-34
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY + RVAVRRGGRKRPN KGIVYGKPK+ GIN++K VRNLRSVAEER G   AN+RVLNSYWINQDAT+KYFEV
Sbjct:   35 KQGYVVYRVAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVCANLRVLNSYWINQDATYKYFEV 111
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BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: A0A7S2UVW3_9STRA (Ribosomal protein L15 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVW3_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.050e-34
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY + RVAVRRGGRKRPN KGIVYGKPKH GIN++K VRNL+SVAE+R G + AN+RVLNSYW+NQDAT+KY+EV
Sbjct:   56 KQGYVVYRVAVRRGGRKRPNPKGIVYGKPKHQGINQLKFVRNLQSVAEQRAGKRCANLRVLNSYWVNQDATYKYYEV 132
[Close]
BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: A0A835ZF84_9STRA (Ribosomal protein L15 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF84_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.050e-34
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEV 237
            +QGY++ RVAVRRGGRKRPN KGIVYGKPK+ GI ++K VR+LRSVAEER GAK ANMRVLNSYW+NQDAT+KY+EV
Sbjct:   56 KQGYSVFRVAVRRGGRKRPNYKGIVYGKPKNQGITQLKFVRSLRSVAEERAGAKCANMRVLNSYWVNQDATYKYYEV 132
[Close]
BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Match: F0Y8J7_AURAN (Ribosomal protein L15 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8J7_AURAN)

HSP 1 Score: 123 bits (309), Expect = 1.170e-33
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    7 RQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFANMRVLNSYWINQDATFKYFEVGTKTP 252
            ++GY + R AVRRGGRKRPN KGIVYGKPKH GIN++K  RNL+SVAEERVG K  N+RVLNSYW+NQDAT+KY+EV    P
Sbjct:   56 KEGYVIYRSAVRRGGRKRPNGKGIVYGKPKHQGINQLKFARNLQSVAEERVGKKCGNLRVLNSYWVNQDATYKYYEVIAVDP 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128327.2087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT0_ECTSI1.280e-4591.46Ribosomal protein L15 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A485KI84_9STRA4.200e-3981.82Ribosomal protein L15 n=7 Tax=Saprolegniaceae TaxI... [more]
F0WIA3_9STRA1.740e-3881.82Ribosomal protein L15 n=2 Tax=Albugo TaxID=65356 R... [more]
K3WHU9_GLOUD1.370e-3780.52Ribosomal protein L15 n=26 Tax=Oomycota TaxID=4762... [more]
A0A7S1UIX1_9STRA2.220e-3679.22Ribosomal protein L15 n=1 Tax=Phaeomonas parva Tax... [more]
A0A2D4BT83_PYTIN3.150e-3677.92Ribosomal protein L15 n=1 Tax=Pythium insidiosum T... [more]
A0A482T0Y2_9ARCH1.630e-3479.2250S ribosomal protein L15e n=1 Tax=archaeon TaxID=... [more]
A0A7S2UVW3_9STRA2.050e-3475.32Ribosomal protein L15 n=1 Tax=Fibrocapsa japonica ... [more]
A0A835ZF84_9STRA2.050e-3477.92Ribosomal protein L15 n=2 Tax=Tribonema minus TaxI... [more]
F0Y8J7_AURAN1.170e-3370.73Ribosomal protein L15 n=1 Tax=Aureococcus anophage... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128327contigH-elongata_contig128327:119..882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.8e-32
Seed eggNOG ortholog2880.D8LNT0
Preferred nameRPL15
KEGG koko:K02877,ko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016236,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0031672,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042493,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061919,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1632@1,KOG1678@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko02000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L15e
Ec32 orthologEc-08_005940.1
Exons2
Model size255
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128327.2087.1prot_H-elongata_contig128327.2087.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128327 119..861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.3485897-CDS-H-elongata_contig128327:118..2881622929762.3485897-CDS-H-elongata_contig128327:118..288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128327 119..288 -
1691679148.1484134-CDS-H-elongata_contig128327:118..2881691679148.1484134-CDS-H-elongata_contig128327:118..288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128327 119..288 -
1622929762.3620198-CDS-H-elongata_contig128327:797..8611622929762.3620198-CDS-H-elongata_contig128327:797..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128327 798..861 -
1691679148.159284-CDS-H-elongata_contig128327:797..8611691679148.159284-CDS-H-elongata_contig128327:797..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128327 798..861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.3767707-UTR-H-elongata_contig128327:861..8821622929762.3767707-UTR-H-elongata_contig128327:861..882Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128327 862..882 -
1691679148.1695278-UTR-H-elongata_contig128327:861..8821691679148.1695278-UTR-H-elongata_contig128327:861..882Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128327 862..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128327.2087.1

>prot_H-elongata_contig128327.2087.1 ID=prot_H-elongata_contig128327.2087.1|Name=mRNA_H-elongata_contig128327.2087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKF
ANMRVLNSYWINQDATFKYFEVGTKTP*
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mRNA from alignment at H-elongata_contig128327:119..882-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128327.2087.1 ID=mRNA_H-elongata_contig128327.2087.1|Name=mRNA_H-elongata_contig128327.2087.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=764bp|location=Sequence derived from alignment at H-elongata_contig128327:119..882- (Himanthalia elongata Himel1 dioecious)
CGTCTTCGCCAGGGCTACACGATGGTGCGAGTGGCAGTTCGTCGTGGGGG
GCGTAAGAGGCCCAACGCTAAGGGTATCGTGTACGGTAAGCTACCGATCT
TAAAATGATCGGATTCTTCTGTAGCCCCCCCCCCCCTCTCTATCTCCCTC
CCCAACAAAAATAGAAAGAACGGGTAGCTTTCATGAGAGCTCGGCCCATC
GCAGGCAAGTCGTGACCGTGGCGGTGACGAGGATGATGACAAGGAGATCG
CACGAGCCTCGAGACTAGCCCTTCCCCCGTCTAGCTTCCCTCGTTTGAGT
AGCTCTCGATCGCGATGAGGCGTATGTGTCGTTAGAAGCTAGTAATACTT
GGATGTGCGGTGGTGAGCTACAGTTCTCGGGAAGCGGTCACGGCTAAACC
ACACTAAACGACGCCGTAAGCACGTCAAAAGAGTAGGCTCGGAAAAAACT
CATTATGAAGTCTCCTTTGCCCGTGTAAATCTAGCAGCGTTTTATAGACG
TCGCGCTTAAAAAGGATATATAGAGGGATCTTCTGTTAACCCGTGCACTC
ACTACAAAACGTCCCCCACGGTGAAACCCCCTGAAAAAACCCAGGAAAGC
CGAAGCACCACGGTATCAACAAGATCAAGGCCGTGCGTAACCTGAGGTCC
GTGGCCGAAGAGCGCGTGGGTGCTAAGTTCGCCAACATGCGCGTCCTGAA
CTCATACTGGATCAACCAAGACGCCACGTTCAAATACTTCGAGGTGGGTA
CCAAAACTCCATAG
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Coding sequence (CDS) from alignment at H-elongata_contig128327:119..882-

>mRNA_H-elongata_contig128327.2087.1 ID=mRNA_H-elongata_contig128327.2087.1|Name=mRNA_H-elongata_contig128327.2087.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig128327:119..882- (Himanthalia elongata Himel1 dioecious)
ATGGTGCGAGTGGCAGTTCGTCGTGGGGGGCGTAAGAGGCCCAACGCTAA
GGGTATCGTGTACGATGGTGCGAGTGGCAGTTCGTCGTGGGGGGCGTAAG
AGGCCCAACGCTAAGGGTATCGTGTACGGAAAGCCGAAGCACCACGGTAT
CAACAAGATCAAGGCCGTGCGTAACCTGAGGTCCGTGGCCGAAGAGCGCG
TGGGTGCTAAGTTCGCCAACATGCGCGTCCTGAACTCATACTGGATCAAC
CAAGACGCCACGTTCAAATACTTCGAGGTGGGTACCAAAACTCCATAGGA
AAGCCGAAGCACCACGGTATCAACAAGATCAAGGCCGTGCGTAACCTGAG
GTCCGTGGCCGAAGAGCGCGTGGGTGCTAAGTTCGCCAACATGCGCGTCC
TGAACTCATACTGGATCAACCAAGACGCCACGTTCAAATACTTCGAGGTG
GGTACCAAAACTCCATAG
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