mRNA_H-elongata_contig128310.2086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128310.2086.1
Unique NamemRNA_H-elongata_contig128310.2086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128310.2086.1 vs. uniprot
Match: D8LH10_ECTSI (Similar to neutral Sphingomyelinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH10_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 8.420e-38
Identity = 71/98 (72.45%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 RRPLTQGSRG--MDPYAQEEGPGRVSAVTRLWADLWHYGPGKTKDAFGTEADVRAISGSGNNNWSGFKLRVLNQNLWALPVVSRCMEARVHAFAKTLG 288
            RRP    SRG   DPYA EEGPGRVS + RL  DLW YG G TKDA+GTEADVRAIS S N +W+GFKLRVL QNLW +PV+SRC+EARVHAFAKTLG
Sbjct:   59 RRPRAGDSRGPRADPYAGEEGPGRVSRLARLRMDLWGYGAGNTKDAYGTEADVRAISES-NQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLG 155
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BLAST of mRNA_H-elongata_contig128310.2086.1 vs. uniprot
Match: A0A6H5L123_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L123_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.260e-25
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   94 DLWHYGPGKTKDAFGTEADVRAISGSGNNNWSGFKLRVLNQNLWALPVVSRCMEARVHAFAKTLG 288
            DLW +G G TKDA+GTE DVRAIS S N +W+GFKLRVL QNLW +PV+SRC+EARVHAFAKTLG
Sbjct:    2 DLWGHGAGNTKDAYGTETDVRAISES-NQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLG 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128310.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH10_ECTSI8.420e-3872.45Similar to neutral Sphingomyelinase, putative n=1 ... [more]
A0A6H5L123_9PHAE6.260e-2575.38Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128310contigH-elongata_contig128310:276..1368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog2880.D8LH10
Preferred nameSMPD2
KEGG rclassRC00017,RC00425
KEGG koko:K01117,ko:K12351,ko:K12818
KEGG ReactionR02541
KEGG Pathwayko00600,ko01100,ko03040,ko04071,map00600,map01100,map03040,map04071
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004620,GO:0004629,GO:0004767,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005783,GO:0005886,GO:0005887,GO:0005901,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009605,GO:0009612,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019637,GO:0019867,GO:0023052,GO:0030148,GO:0030149,GO:0031090,GO:0031224,GO:0031226,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032995,GO:0034248,GO:0034250,GO:0034641,GO:0035556,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045834,GO:0046466,GO:0046467,GO:0046513,GO:0046519,GO:0046521,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051716,GO:0052712,GO:0052713,GO:0052714,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0090154,GO:0097164,GO:0098573,GO:0098588,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903338,GO:1905038,GO:2000303,GO:2000304
EggNOG free text desc.inositol phosphosphingolipid phospholipase activity
EggNOG OGsKOG3873@1,KOG3873@2759
EC3.1.4.12,3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-06_010780.1
Exons2
Model size294
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128310.2086.1prot_H-elongata_contig128310.2086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128310 276..1338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.2676032-CDS-H-elongata_contig128310:275..3961622929762.2676032-CDS-H-elongata_contig128310:275..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128310 276..396 -
1691679148.1149545-CDS-H-elongata_contig128310:275..3961691679148.1149545-CDS-H-elongata_contig128310:275..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128310 276..396 -
1622929762.2839878-CDS-H-elongata_contig128310:1195..13381622929762.2839878-CDS-H-elongata_contig128310:1195..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128310 1196..1338 -
1691679148.129526-CDS-H-elongata_contig128310:1195..13381691679148.129526-CDS-H-elongata_contig128310:1195..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128310 1196..1338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.2991946-UTR-H-elongata_contig128310:1338..13681622929762.2991946-UTR-H-elongata_contig128310:1338..1368Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128310 1339..1368 -
1691679148.138217-UTR-H-elongata_contig128310:1338..13681691679148.138217-UTR-H-elongata_contig128310:1338..1368Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128310 1339..1368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128310.2086.1

>prot_H-elongata_contig128310.2086.1 ID=prot_H-elongata_contig128310.2086.1|Name=mRNA_H-elongata_contig128310.2086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MDPYAQEEGPGRVSAVTRLWADLWHYGPGKTKDAFGTEADVRAISGSGNN
NWSGFKLRVLNQNLWALPVVSRCMEARVHAFAKTLGR*
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mRNA from alignment at H-elongata_contig128310:276..1368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128310.2086.1 ID=mRNA_H-elongata_contig128310.2086.1|Name=mRNA_H-elongata_contig128310.2086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-elongata_contig128310:276..1368- (Himanthalia elongata Himel1 dioecious)
AGGCGCCCACTAACCCAAGGCAGTCGCGGCATGGACCCCTACGCACAAGA
AGAGGGTCCTGGGAGGGTGTCGGCGGTGACGCGACTGTGGGCGGATTTGT
GGCACTATGGACCCGGCAAGACCAAGGATGCCTTCGGAACGGAGGCCGAC
GTGCGGGCTATATCCGGCAGCGGGTGAGAGAAGGGGGAGGGGTAGAGAGG
CGTTCGTGTAACGGTGTCGATGAGCGTTACATGCATCACGCCAGGGGTTC
AAGCGGGGGAGGGTAGGAGCATCGACGTGGTAATCCATTATATACATGCT
ATTATGATGGGTTCAAACAGTTCAACATACATTTACACATGTCTGGCCCG
AGGTTTTCGTGATAAGTACCTATCATTGATCCCCCCCTAGGAGGATTAAT
GCGAAGTGACAAAAAATGACTAGGATGACAGGACCGTACATATATATACA
TATAGGTATATTGCAAACCCTACCGTTGGAGAGCGTGCTTGCGCTGTGCA
TGCTCACCGTGTAGCACAGAAAACGCAGGCATGCGTGGATATGTTTAGGT
ACCTTTCAAGGACTGCTCGGCGAGCAAGGTTCTGACCACTAGCCTCATTC
GCCTCATATCCAGGGCCAGGGGGTATGGACAAGACGCTCTTGCCCCTTGT
ATGGTCCATTGAAAGGCACCAGTCCCGAGCACGGGTGGAAACCTTTGCCA
CCCCAATGCGCATGTTTGTTCCGGGGACACCTCTCTTGTCTGGGAACATC
CATCGCTATTACAACTGCTACCTGCTTTTTAAGCGGTCGTACAACGATCA
GTATTTTGACCTGGGAGGCGTCATTTGTGCTCCCTCCCGCGTTTCCGTCC
GTGCCTTTGAGCCGCGCTCTGGTGCGCACGCATTCTATTTTTGAGCATGG
CCGTTTTTAAAAATAGCATCGTCCCATCCCCGTCCCCCGTCCCCTCCGCC
CTCGCTAAACAAACAAATAAAGCAATAATAATTGGTCGGGGTTCAAGCTC
CGCGTGCTGAACCAGAATCTTTGGGCTCTGCCCGTTGTCAGCCGATGCAT
GGAGGCCCGCGTCCACGCTTTCGCCAAGACTTTAGGGCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig128310:276..1368-

>mRNA_H-elongata_contig128310.2086.1 ID=mRNA_H-elongata_contig128310.2086.1|Name=mRNA_H-elongata_contig128310.2086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig128310:276..1368- (Himanthalia elongata Himel1 dioecious)
ATGGACCCCTACGCACAAGAAGAGGGTCCTGGGAGGGTGTCGGCGGTGAC
GCGACTGTGGGCGGATTTGTGGCACTATGGACCCGGCAAGACCAAGGATG
CCTTCGGAACGGAGGCCGACGTGCGGGCTATATCCGGCAGCGGATGGACC
CCTACGCACAAGAAGAGGGTCCTGGGAGGGTGTCGGCGGTGACGCGACTG
TGGGCGGATTTGTGGCACTATGGACCCGGCAAGACCAAGGATGCCTTCGG
AACGGAGGCCGACGTGCGGGCTATATCCGGCAGCGGCAATAATAATTGGT
CGGGGTTCAAGCTCCGCGTGCTGAACCAGAATCTTTGGGCTCTGCCCGTT
GTCAGCCGATGCATGGAGGCCCGCGTCCACGCTTTCGCCAAGACTTTAGG
GCGGTGACAATAATAATTGGTCGGGGTTCAAGCTCCGCGTGCTGAACCAG
AATCTTTGGGCTCTGCCCGTTGTCAGCCGATGCATGGAGGCCCGCGTCCA
CGCTTTCGCCAAGACTTTAGGGCGGTGA
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