mRNA_H-elongata_contig128307.2085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128307.2085.1
Unique NamemRNA_H-elongata_contig128307.2085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A6H5L128_9PHAE (COX assembly mitochondrial protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L128_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.830e-21
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MHPPL RPHP CHEEVK+L+ACHE NPY KFFGACN+ K A+D CF
Sbjct:    1 MHPPLLRPHPSCHEEVKMLMACHEENPYGKFFGACNDLKLALDSCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A484DYF6_BRELC (COX assembly mitochondrial protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYF6_BRELC)

HSP 1 Score: 79.7 bits (195), Expect = 2.080e-18
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MH PL RPHP C  E+K LL CHE NPYAKFFGAC++AK A+DKCF
Sbjct:    1 MHAPLDRPHPDCQAEIKALLDCHENNPYAKFFGACSDAKTALDKCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A0P1AB85_PLAHL (COX assembly mitochondrial protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB85_PLAHL)

HSP 1 Score: 76.3 bits (186), Expect = 4.170e-17
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MH PL RPHP C  E+K LL CH  NPYAKFFGACN+ K+A+D+CF
Sbjct:    1 MHAPLDRPHPDCQIEIKALLDCHNDNPYAKFFGACNDVKSALDQCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: K3WST6_GLOUD (COX assembly mitochondrial protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST6_GLOUD)

HSP 1 Score: 71.6 bits (174), Expect = 2.870e-15
Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MH PL RPHP C E +  L  CHE NP  KFFGACNEAK A+DKCF
Sbjct:    1 MHAPLDRPHPDCQEVIMALNLCHEENPRMKFFGACNEAKVALDKCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: F0WMZ2_9STRA (COX assembly mitochondrial protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMZ2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.840e-15
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MHPPL RPHP C + +K L  CH  NP AKF GACNEAK A+D CF
Sbjct:    1 MHPPLDRPHPLCQQVIKNLKQCHTENPRAKFLGACNEAKRALDDCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A2D4BK21_PYTIN (COX assembly mitochondrial protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK21_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 8.890e-15
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MHP L R HP C + ++ L+ CHE NP AKFFGAC+EAK A+DKCF
Sbjct:    1 MHPSLDRDHPDCQDVIEALVTCHEQNPMAKFFGACSEAKVALDKCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A8K1CUT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUT4_PYTOL)

HSP 1 Score: 69.7 bits (169), Expect = 1.660e-14
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MHP L R HP C + +  L  CH+ NP AKFFGACN+AKN +DKCF
Sbjct:    1 MHPSLEREHPDCQDVIHALNTCHDENPMAKFFGACNDAKNELDKCF 46
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A1E7EUM1_9STRA (COX assembly mitochondrial protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-10
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MHPPL RPHP+C +E+  L  CH +    KF+ ACNE K+A+DKCF
Sbjct:    1 MHPPLDRPHPECQDEINGLRECHRSASKLKFW-ACNEVKDALDKCF 45
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A7I4DN43_PHYPA (COX assembly mitochondrial protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DN43_PHYPA)

HSP 1 Score: 55.8 bits (133), Expect = 4.940e-9
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 MHPPL--HRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF 138
            MHPPL  H+ HP C E +     CHE +P+ KFFGACN+ K  +DKCF
Sbjct:    1 MHPPLTLHK-HPACAELIVNFKKCHEDHPFLKFFGACNDLKIQLDKCF 47
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BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Match: A0A1X6NZJ3_PORUM (COX assembly mitochondrial protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZJ3_PORUM)

HSP 1 Score: 54.3 bits (129), Expect = 2.630e-8
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:   25 HPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKC 135
            HP C + +  L  CHE +P  KFFGACN+AK A+D C
Sbjct:   10 HPSCQDAILALSTCHEGHPLTKFFGACNDAKAALDAC 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128307.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L128_9PHAE6.830e-2176.09COX assembly mitochondrial protein n=1 Tax=Ectocar... [more]
A0A484DYF6_BRELC2.080e-1871.74COX assembly mitochondrial protein n=1 Tax=Bremia ... [more]
A0A0P1AB85_PLAHL4.170e-1767.39COX assembly mitochondrial protein n=1 Tax=Plasmop... [more]
K3WST6_GLOUD2.870e-1567.39COX assembly mitochondrial protein n=1 Tax=Globisp... [more]
F0WMZ2_9STRA3.840e-1565.22COX assembly mitochondrial protein n=1 Tax=Albugo ... [more]
A0A2D4BK21_PYTIN8.890e-1563.04COX assembly mitochondrial protein n=1 Tax=Pythium... [more]
A0A8K1CUT4_PYTOL1.660e-1460.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1E7EUM1_9STRA1.090e-1056.52COX assembly mitochondrial protein (Fragment) n=1 ... [more]
A0A7I4DN43_PHYPA4.940e-954.17COX assembly mitochondrial protein n=1 Tax=Physcom... [more]
A0A1X6NZJ3_PORUM2.630e-854.05COX assembly mitochondrial protein n=1 Tax=Porphyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128307contigH-elongata_contig128307:427..1081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue5.6e-12
Seed eggNOG ortholog4792.ETI38031
KEGG koko:K18172
EggNOG free text desc.Cytochrome c oxidase biogenesis protein Cmc1 like
EggNOG OGs2CZWX@1,2SBZE@2759
Ec32 ortholog descriptionCytochrome c oxidase biogenesis protein Cmc1-like
Ec32 orthologEc-15_002730.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.1958969-CDS-H-elongata_contig128307:426..4681622929762.1958969-CDS-H-elongata_contig128307:426..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128307 427..468 +
1691679148.0893385-CDS-H-elongata_contig128307:426..4681691679148.0893385-CDS-H-elongata_contig128307:426..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128307 427..468 +
1622929762.213596-CDS-H-elongata_contig128307:985..10811622929762.213596-CDS-H-elongata_contig128307:985..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128307 986..1081 +
1691679148.101692-CDS-H-elongata_contig128307:985..10811691679148.101692-CDS-H-elongata_contig128307:985..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128307 986..1081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128307.2085.1prot_H-elongata_contig128307.2085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128307 427..1081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128307.2085.1

>prot_H-elongata_contig128307.2085.1 ID=prot_H-elongata_contig128307.2085.1|Name=mRNA_H-elongata_contig128307.2085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MHPPLHRPHPKCHEEVKVLLACHEANPYAKFFGACNEAKNAIDKCF
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mRNA from alignment at H-elongata_contig128307:427..1081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128307.2085.1 ID=mRNA_H-elongata_contig128307.2085.1|Name=mRNA_H-elongata_contig128307.2085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=655bp|location=Sequence derived from alignment at H-elongata_contig128307:427..1081+ (Himanthalia elongata Himel1 dioecious)
ATGCATCCACCGTTGCACAGGCCACATCCCAAGTGCCATGAGGTGAGTAA
ACGCTGTAATCGACATACATTATAGCAAAAATACGCGTAGTTCCAAGTGT
GATCGAGTGTTATTTTTGGAAGGTGGCTAATATGATGCACGGCCGGCACA
TCGAAATACTCTTTGGTCATCCCTTAATAACTCATGGGATCCCTGCGAGT
TGGAAATAGGTATCAGCACCACCGCAACAGAGGATGCATATTGACAAGTG
ACATTGAAATGATGACTACAGTCCTCTGGGTTTGTAATTTTGCCACGCCT
TTGACTGCGCACACGGAAATAGCGACTGTCTTCCAATTTGTGACCCGCAC
GAAATCAATGCCACTGATACGTAGACATCTCTGGTAAGGGTATATACGCT
ATGGTCTTGTCATTGCTTCACTTTTCTATCATCAAAAATAACTGGGTACC
ATTTCGGCATATCGTCGTAGGCGTGCCGCGTACTACTGCCCTGGCATGGA
GCAACGCATCACACAATTTTTTCCTCTACCGCGCCTTGTTGTACTAACTT
GATATAAAGGAGGTGAAAGTGCTTCTGGCGTGCCACGAGGCCAACCCCTA
CGCCAAATTCTTCGGAGCCTGCAACGAGGCGAAGAACGCGATAGACAAGT
GCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig128307:427..1081+

>mRNA_H-elongata_contig128307.2085.1 ID=mRNA_H-elongata_contig128307.2085.1|Name=mRNA_H-elongata_contig128307.2085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig128307:427..1081+ (Himanthalia elongata Himel1 dioecious)
ATGCATCCACCGTTGCACAGGCCACATCCCAAGTGCCATGAGATGCATCC
ACCGTTGCACAGGCCACATCCCAAGTGCCATGAGGAGGTGAAAGTGCTTC
TGGCGTGCCACGAGGCCAACCCCTACGCCAAATTCTTCGGAGCCTGCAAC
GAGGCGAAGAACGCGATAGACAAGTGCTTCGAGGTGAAAGTGCTTCTGGC
GTGCCACGAGGCCAACCCCTACGCCAAATTCTTCGGAGCCTGCAACGAGG
CGAAGAACGCGATAGACAAGTGCTTC
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