mRNA_H-elongata_contig128280.2081.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128280.2081.1
Unique NamemRNA_H-elongata_contig128280.2081.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A6G1SJU5_9ACAR (Histone H4 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJU5_9ACAR)

HSP 1 Score: 204 bits (518), Expect = 8.260e-66
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 1 
Query:    1 PIHSQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            P+  Q + NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   27 PLQLQNKFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 138
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.550e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:   22 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A0D2VIX2_GOSRA (Histone H4 (Fragment) n=3 Tax=Gossypium TaxID=3633 RepID=A0A0D2VIX2_GOSRA)

HSP 1 Score: 203 bits (517), Expect = 6.370e-65
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:    1 PIHSQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            P H +  S MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   79 PEHKKLSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 190
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A445HFY4_GLYSO (Histone H4 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HFY4_GLYSO)

HSP 1 Score: 202 bits (513), Expect = 9.790e-65
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:    1 PIHSQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            P   + R+ MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   49 PFQLRRRATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 160
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: UPI000528D6F7 (histone H4-like isoform X2 n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI000528D6F7)

HSP 1 Score: 200 bits (508), Expect = 1.120e-64
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:   10 SQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            +Q  S+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 NQQHSSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
[Close]
BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: UPI000A35805F (histone H4 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=UPI000A35805F)

HSP 1 Score: 200 bits (508), Expect = 1.400e-64
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    4 IHSQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
              S  R++MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    7 FFSLARASMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.800e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   28 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A8J5IIH2_ZINOF (Histone H4 n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5IIH2_ZINOF)

HSP 1 Score: 200 bits (508), Expect = 1.870e-64
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    4 IHSQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            +  + RS MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 LQLRIRSIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
[Close]
BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: A0A453MYW1_AEGTS (Histone H4 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MYW1_AEGTS)

HSP 1 Score: 199 bits (506), Expect = 2.180e-64
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   10 SQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            ++ R  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 ARRRERMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 109
[Close]
BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 199 bits (506), Expect = 2.250e-64
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   10 SQTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            +Q   NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 AQHLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128280.2081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G1SJU5_9ACAR8.260e-6692.86Histone H4 (Fragment) n=1 Tax=Aceria tosichella Ta... [more]
A0A3L6V663_9STRA1.550e-65100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A0D2VIX2_GOSRA6.370e-6592.86Histone H4 (Fragment) n=3 Tax=Gossypium TaxID=3633... [more]
A0A445HFY4_GLYSO9.790e-6591.96Histone H4 n=1 Tax=Glycine soja TaxID=3848 RepID=A... [more]
UPI000528D6F71.120e-6494.50histone H4-like isoform X2 n=2 Tax=Euteleostomi Ta... [more]
UPI000A35805F1.400e-6492.79histone H4 n=1 Tax=Heterocephalus glaber TaxID=101... [more]
A0A024G0M5_9STRA1.800e-64100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
A0A8J5IIH2_ZINOF1.870e-6492.79Histone H4 n=2 Tax=Zingiber officinale TaxID=94328... [more]
A0A453MYW1_AEGTS2.180e-6493.58Histone H4 n=1 Tax=Aegilops tauschii subsp. strang... [more]
W5QFN7_SHEEP2.250e-6494.50Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128280contigH-elongata_contig128280:167..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.7145576-CDS-H-elongata_contig128280:166..4781622929761.7145576-CDS-H-elongata_contig128280:166..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128280 167..478 -
1691679147.8816252-CDS-H-elongata_contig128280:166..4781691679147.8816252-CDS-H-elongata_contig128280:166..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128280 167..478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.747239-UTR-H-elongata_contig128280:478..5051622929761.747239-UTR-H-elongata_contig128280:478..505Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128280 479..505 -
1691679147.8925092-UTR-H-elongata_contig128280:478..5051691679147.8925092-UTR-H-elongata_contig128280:478..505Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128280 479..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128280.2081.1prot_H-elongata_contig128280.2081.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128280 167..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128280.2081.1

>prot_H-elongata_contig128280.2081.1 ID=prot_H-elongata_contig128280.2081.1|Name=mRNA_H-elongata_contig128280.2081.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at H-elongata_contig128280:167..505-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128280.2081.1 ID=mRNA_H-elongata_contig128280.2081.1|Name=mRNA_H-elongata_contig128280.2081.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig128280:167..505- (Himanthalia elongata Himel1 dioecious)
CCTATTCATTCGCAAACAAGAAGCAATATGTCTGGTCGCGGAAAAGGCGG
TAAAGGTCTGGGCAAGGGTGGCGCCAAGCGCCACCGCAAGGTACTACGCG
ATAACATCCAGGGTATCACGAAGCCTGCTATTCGCCGTTTGGCTCGCCGC
GGCGGTGTCAAGCGTATTTCTGGACTCATCTACGAGGAGACTCGTGGTGT
GCTGAAAGTGTTTCTCGAAAACGTGATTCGTGACTCTGTCACGTACACTG
AACACGCTCGCAGGAAGACTGTCACCGCCATGGACGTCGTTTATGCCCTG
AAGCGTCAGGGCCGCACTCTTTATGGTTTTGGCGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig128280:167..505-

>mRNA_H-elongata_contig128280.2081.1 ID=mRNA_H-elongata_contig128280.2081.1|Name=mRNA_H-elongata_contig128280.2081.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig128280:167..505- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGTCGCGGAAAAGGCGGTAAAGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTACGCGATAACATCCAGGGTATCACGAAGCCTG
CTATTCGCCGTTTGGCTCGCCGCGGCGGTGTCAAGCGTATTTCTGGACTC
ATCTACGAGGAGACTCGTGGTGTGCTGAAAGTGTTTCTCGAAAACGTGAT
TCGTGACTCTGTCACGTACACTGAACACGCTCGCAGGAAGACTGTCACCG
CCATGGACGTCGTTTATGCCCTGAAGCGTCAGGGCCGCACTCTTTATGGT
TTTGGCGGCTAAATGTCTGGTCGCGGAAAAGGCGGTAAAGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGCAAGGTACTACGCGATAACATCCAGGGTA
TCACGAAGCCTGCTATTCGCCGTTTGGCTCGCCGCGGCGGTGTCAAGCGT
ATTTCTGGACTCATCTACGAGGAGACTCGTGGTGTGCTGAAAGTGTTTCT
CGAAAACGTGATTCGTGACTCTGTCACGTACACTGAACACGCTCGCAGGA
AGACTGTCACCGCCATGGACGTCGTTTATGCCCTGAAGCGTCAGGGCCGC
ACTCTTTATGGTTTTGGCGGCTAA
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