mRNA_H-elongata_contig128232.2078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128232.2078.1
Unique NamemRNA_H-elongata_contig128232.2078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.170e-17
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 YLDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            YLDPLDWWRV+ ADFPHL+ LARRVLAIP TQA+SERLFSCAG
Sbjct:  220 YLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAG 262
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-9
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 YLDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERL 114
            Y DPLDWWR +  +FPHL+ LARRVLAIP +QA SER+
Sbjct:  512 YNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.120e-8
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   34 NADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            + DFPHL+ LARRVLAIP TQAKSERLFSCAG
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAG 182
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A3M7PLT2_BRAPC (Zinc finger BED domain-containing n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PLT2_BRAPC)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-8
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 YLDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            Y+DPLDWW+ K A FP L+ +A+++L IP T A  ER FS  G
Sbjct:   23 YIDPLDWWQRKEASFPSLAKIAKKILGIPATTASVERFFSKTG 65
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A8M6Z1Y5_DANRE (zinc finger BED domain-containing protein 1-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M6Z1Y5_DANRE)

HSP 1 Score: 55.8 bits (133), Expect = 6.060e-8
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 LDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            +DPL+WW+V  A+FP +S LAR+ L IP T A SER FS  G
Sbjct:  225 VDPLEWWKVHEANFPRISQLARKYLCIPATSAPSERAFSTGG 266
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A5A9P126_9TELE (Zinc finger BED domain-containing protein 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P126_9TELE)

HSP 1 Score: 55.5 bits (132), Expect = 9.300e-8
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 LDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            +DPL+WW+V  A+FP +S LAR+ L IP T A SER FS  G
Sbjct:  568 VDPLEWWKVHEANFPRVSQLARKYLCIPATSAPSERAFSTGG 609
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A2G8JJ67_STIJA (Putative zinc finger BED domain-containing protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JJ67_STIJA)

HSP 1 Score: 55.5 bits (132), Expect = 9.310e-8
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 LDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            +DPL WW+ +   FP L+ LAR VLA+PVT A +ERLFS AG
Sbjct:  523 IDPLQWWKAQQNWFPRLAHLARIVLAVPVTSAPAERLFSAAG 564
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A6P8TKU9_GYMAC (zinc finger BED domain-containing protein 1-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8TKU9_GYMAC)

HSP 1 Score: 55.1 bits (131), Expect = 1.250e-7
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    7 DPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            DPL WW++  A+FP LS LA++ L+IP T A SER+FS  G
Sbjct:  307 DPLQWWKLHEANFPRLSYLAKKYLSIPATSAPSERVFSTGG 347
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: A0A6P8UYM2_GYMAC (zinc finger BED domain-containing protein 1-like n=2 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8UYM2_GYMAC)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    7 DPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            DPL WW++  A+FP LS LA++ L+IP T A SER+FS  G
Sbjct:  418 DPLQWWKLHEANFPRLSYLAKKYLSIPATSAPSERVFSTGG 458
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BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 DPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG 129
            +PLD WR K  ++P L+ LARRVLAIP +QA+SER+FS AG
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAG 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128232.2078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE2.170e-1786.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.170e-968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPB0_9PHAE1.120e-884.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A3M7PLT2_BRAPC1.630e-853.49Zinc finger BED domain-containing n=1 Tax=Brachion... [more]
A0A8M6Z1Y5_DANRE6.060e-857.14zinc finger BED domain-containing protein 1-like n... [more]
A0A5A9P126_9TELE9.300e-857.14Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A2G8JJ67_STIJA9.310e-859.52Putative zinc finger BED domain-containing protein... [more]
A0A6P8TKU9_GYMAC1.250e-756.10zinc finger BED domain-containing protein 1-like n... [more]
A0A6P8UYM2_GYMAC1.270e-756.10zinc finger BED domain-containing protein 1-like n... [more]
D8LCS5_ECTSI1.740e-763.41Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128232contigH-elongata_contig128232:1752..1880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue6e-08
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.526691-CDS-H-elongata_contig128232:1751..18801622929761.526691-CDS-H-elongata_contig128232:1751..1880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128232 1752..1880 +
1691679147.8353803-CDS-H-elongata_contig128232:1751..18801691679147.8353803-CDS-H-elongata_contig128232:1751..1880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128232 1752..1880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128232.2078.1prot_H-elongata_contig128232.2078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128232 1752..1880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128232.2078.1

>prot_H-elongata_contig128232.2078.1 ID=prot_H-elongata_contig128232.2078.1|Name=mRNA_H-elongata_contig128232.2078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
YLDPLDWWRVKNADFPHLSILARRVLAIPVTQAKSERLFSCAG
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mRNA from alignment at H-elongata_contig128232:1752..1880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128232.2078.1 ID=mRNA_H-elongata_contig128232.2078.1|Name=mRNA_H-elongata_contig128232.2078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig128232:1752..1880+ (Himanthalia elongata Himel1 dioecious)
TATCTCGACCCCTTGGACTGGTGGCGGGTGAAGAACGCCGACTTCCCGCA
CTTGTCCATTCTCGCCCGCCGTGTCCTCGCTATCCCCGTCACACAGGCGA
AGTCGGAGCGCCTGTTCTCCTGCGCAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig128232:1752..1880+

>mRNA_H-elongata_contig128232.2078.1 ID=mRNA_H-elongata_contig128232.2078.1|Name=mRNA_H-elongata_contig128232.2078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig128232:1752..1880+ (Himanthalia elongata Himel1 dioecious)
TATCTCGACCCCTTGGACTGGTGGCGGGTGAAGAACGCCGACTTCCCGCA
CTTGTCCATTCTCGCCCGCCGTGTCCTCGCTATCCCCGTCACACAGGCGA
AGTCGGAGCGCCTGTTCTCCTGCGCAGGATATCTCGACCCCTTGGACTGG
TGGCGGGTGAAGAACGCCGACTTCCCGCACTTGTCCATTCTCGCCCGCCG
TGTCCTCGCTATCCCCGTCACACAGGCGAAGTCGGAGCGCCTGTTCTCCT
GCGCAGGA
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