mRNA_H-elongata_contig12813.2074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12813.2074.1
Unique NamemRNA_H-elongata_contig12813.2074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12813.2074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12813contigH-elongata_contig12813:4711..5728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size832
Cds size804
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12813.2074.1prot_H-elongata_contig12813.2074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12813 4739..5728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.7908878-UTR-H-elongata_contig12813:4710..47381622929760.7908878-UTR-H-elongata_contig12813:4710..4738Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12813 4711..4738 +
1691679147.5477593-UTR-H-elongata_contig12813:4710..47381691679147.5477593-UTR-H-elongata_contig12813:4710..4738Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12813 4711..4738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.838019-CDS-H-elongata_contig12813:4738..51921622929760.838019-CDS-H-elongata_contig12813:4738..5192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 4739..5192 +
1691679147.5596159-CDS-H-elongata_contig12813:4738..51921691679147.5596159-CDS-H-elongata_contig12813:4738..5192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 4739..5192 +
1622929760.8598318-CDS-H-elongata_contig12813:5378..57281622929760.8598318-CDS-H-elongata_contig12813:5378..5728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 5379..5728 +
1691679147.5690873-CDS-H-elongata_contig12813:5378..57281691679147.5690873-CDS-H-elongata_contig12813:5378..5728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12813 5379..5728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12813.2074.1

>prot_H-elongata_contig12813.2074.1 ID=prot_H-elongata_contig12813.2074.1|Name=mRNA_H-elongata_contig12813.2074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MSSPPQQSSEEQFGLPHESPSSVERDRLDSSTWRPVDGGGDWCEESAEAG
VSAMAARDGEALDEEALERWSWVRSSSSPHWGSSSLGGTLGGMLPIGSGV
GGSAAVTVTNSGTGRSGAARTVRTCEEGEQDRGGLAALPACVQLERDDGG
DERDHVDGKEGSVPVGGSGNVAGGGSVDYSVIADGNSDFGGNGDTGDGDD
NDGGVGGGRQQQSPVRGGGDFATSSLATALRMSETASGSTAGWIANACDF
SNEGLTSQKADRRSAGAA
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mRNA from alignment at H-elongata_contig12813:4711..5728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12813.2074.1 ID=mRNA_H-elongata_contig12813.2074.1|Name=mRNA_H-elongata_contig12813.2074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-elongata_contig12813:4711..5728+ (Himanthalia elongata Himel1 dioecious)
GCTGGAGATTCCCGCGGTCAATGTGACTATGTCATCGCCCCCGCAACAGT
CGAGCGAGGAACAGTTCGGACTTCCGCACGAGTCTCCATCATCAGTCGAA
CGCGACCGTCTGGATTCGTCGACCTGGCGACCCGTAGATGGTGGGGGAGA
CTGGTGCGAGGAGTCGGCAGAGGCCGGTGTGAGCGCGATGGCGGCGCGAG
ACGGAGAGGCGCTGGACGAAGAGGCGCTGGAGAGGTGGTCATGGGTCCGG
TCCAGCTCATCTCCACACTGGGGCTCAAGCTCTCTGGGAGGCACGTTGGG
AGGTATGTTGCCGATCGGGAGTGGCGTAGGTGGAAGCGCGGCGGTAACTG
TTACTAATTCTGGTACCGGTCGCTCTGGGGCGGCGCGGACAGTAAGAACA
TGTGAGGAGGGCGAGCAGGACAGGGGTGGACTGGCCGCGTTGCCGGCATG
TGTGCAGCTTGAGAGGGACGACGGTGGCGATGGCGGAGAATTGACAGCGT
CTCCTCCGGCTTGCAAGGCACATGACCGGACGCTGTTTGCGTTGTCCGCT
TCGCGCGAAGAACAGCTGCCATCGCGGAGCGATGGCGCCGAGATGGACGT
CCGACGGGGGAGTACCCCTGCTCGAGAAATATACGGCTTCGTTGGTGACA
CGCACGAACCATGGCGAGAAAGAGACCACGTGGATGGAAAAGAAGGAAGT
GTACCTGTCGGTGGCAGTGGTAATGTCGCTGGTGGTGGTAGTGTAGATTA
CAGTGTTATTGCCGATGGTAATAGCGATTTCGGTGGCAATGGTGATACCG
GTGACGGCGATGATAACGACGGTGGGGTTGGCGGTGGTCGCCAACAACAG
AGTCCCGTTCGCGGGGGCGGGGATTTCGCGACGAGCTCACTCGCTACGGC
CTTGCGAATGAGCGAAACTGCCAGTGGTTCGACTGCGGGGTGGATCGCGA
ACGCATGCGATTTTAGCAACGAAGGGTTGACGTCACAGAAGGCGGACCGT
CGCAGCGCCGGCGCAGCT
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Coding sequence (CDS) from alignment at H-elongata_contig12813:4711..5728+

>mRNA_H-elongata_contig12813.2074.1 ID=mRNA_H-elongata_contig12813.2074.1|Name=mRNA_H-elongata_contig12813.2074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig12813:4711..5728+ (Himanthalia elongata Himel1 dioecious)
ATGTCATCGCCCCCGCAACAGTCGAGCGAGGAACAGTTCGGACTTCCGCA
CGAGTCTCCATCATCAGTCGAACGCGACCGTCTGGATTCGTCGACCTGGC
GACCCGTAGATGGTGGGGGAGACTGGTGCGAGGAGTCGGCAGAGGCCGGT
GTGAGCGCGATGGCGGCGCGAGACGGAGAGGCGCTGGACGAAGAGGCGCT
GGAGAGGTGGTCATGGGTCCGGTCCAGCTCATCTCCACACTGGGGCTCAA
GCTCTCTGGGAGGCACGTTGGGAGGTATGTTGCCGATCGGGAGTGGCGTA
GGTGGAAGCGCGGCGGTAACTGTTACTAATTCTGGTACCGGTCGCTCTGG
GGCGGCGCGGACAGTAAGAACATGTGAGGAGGGCGAGCAGGACAGGGGTG
GACTGGCCGCGTTGCCGGCATGTGTGCAGCTTGAGAGGGACGACGGTGGC
GATGATGTCATCGCCCCCGCAACAGTCGAGCGAGGAACAGTTCGGACTTC
CGCACGAGTCTCCATCATCAGTCGAACGCGACCGTCTGGATTCGTCGACC
TGGCGACCCGTAGATGGTGGGGGAGACTGGTGCGAGGAGTCGGCAGAGGC
CGGTGTGAGCGCGATGGCGGCGCGAGACGGAGAGGCGCTGGACGAAGAGG
CGCTGGAGAGGTGGTCATGGGTCCGGTCCAGCTCATCTCCACACTGGGGC
TCAAGCTCTCTGGGAGGCACGTTGGGAGGTATGTTGCCGATCGGGAGTGG
CGTAGGTGGAAGCGCGGCGGTAACTGTTACTAATTCTGGTACCGGTCGCT
CTGGGGCGGCGCGGACAGTAAGAACATGTGAGGAGGGCGAGCAGGACAGG
GGTGGACTGGCCGCGTTGCCGGCATGTGTGCAGCTTGAGAGGGACGACGG
TGGCGATGAAAGAGACCACGTGGATGGAAAAGAAGGAAGTGTACCTGTCG
GTGGCAGTGGTAATGTCGCTGGTGGTGGTAGTGTAGATTACAGTGTTATT
GCCGATGGTAATAGCGATTTCGGTGGCAATGGTGATACCGGTGACGGCGA
TGATAACGACGGTGGGGTTGGCGGTGGTCGCCAACAACAGAGTCCCGTTC
GCGGGGGCGGGGATTTCGCGACGAGCTCACTCGCTACGGCCTTGCGAATG
AGCGAAACTGCCAGTGGTTCGACTGCGGGGTGGATCGCGAACGCATGCGA
TTTTAGCAACGAAGGGTTGACGTCACAGAAGGCGGACCGTCGCAGCGCCG
GCGCAGCTAAAGAGACCACGTGGATGGAAAAGAAGGAAGTGTACCTGTCG
GTGGCAGTGGTAATGTCGCTGGTGGTGGTAGTGTAGATTACAGTGTTATT
GCCGATGGTAATAGCGATTTCGGTGGCAATGGTGATACCGGTGACGGCGA
TGATAACGACGGTGGGGTTGGCGGTGGTCGCCAACAACAGAGTCCCGTTC
GCGGGGGCGGGGATTTCGCGACGAGCTCACTCGCTACGGCCTTGCGAATG
AGCGAAACTGCCAGTGGTTCGACTGCGGGGTGGATCGCGAACGCATGCGA
TTTTAGCAACGAAGGGTTGACGTCACAGAAGGCGGACCGTCGCAGCGCCG
GCGCAGCT
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