mRNA_H-elongata_contig128117.2072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128117.2072.1
Unique NamemRNA_H-elongata_contig128117.2072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A6H5KJT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT5_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 7.490e-68
Identity = 102/132 (77.27%), Postives = 117/132 (88.64%), Query Frame = 1
Query:    1 RLKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSVGSQVDRRILTVR 396
            R+KQGDL D DYFDFISFAQYA++A AMRNGRD FEEKVGAEG+KRTVQR  D KDN RLPEEHARRVGD+ILAYCTE FGSTKLAPV+ QG +V+ L+EGCDR+MNLLRLNFY LDY+V + +DR++LTVR
Sbjct:  119 RIKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEKVGAEGEKRTVQRSADFKDNARLPEEHARRVGDRILAYCTEAFGSTKLAPVVTQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVR 250          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: D8LI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI96_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.180e-40
Identity = 74/132 (56.06%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 RLKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSVGSQVDRRILTVR 396
            R+KQGDL D DYFDFISFAQYA++A AMRNGRD FEEK                                   AYCTE FGSTKLAPV+AQG +V+ L+EGCDR+MNLLRLNFY LDY+V + +DR++LTVR
Sbjct:   79 RIKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEK-----------------------------------AYCTEAFGSTKLAPVVAQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVR 175          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A836CM91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM91_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.720e-31
Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   10 QGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLA-PVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSVGSQVDR---RILTV 393
            QGDL D +YFDFISFAQYATIA  MR+ + +F EKVGA+G+ +TVQR P+L D+  LP EHARRVGD+I  Y  ETF S   A P ++    +S +  G +RVM+  RLNF+ +D  V +   +    +LTV
Sbjct:  144 QGDLTDPNYFDFISFAQYATIAAGMRSAQLLFTEKVGADGETQTVQRAPELADDALLPGEHARRVGDRIFTYIMETFASVPEALPQVSVKPPLSIIARGVERVMDKFRLNFFCVDAKVAASTGKDGSAVLTV 275          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A7S2V3L1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   10 QGDLMDADYFDFISFAQYATIAMAMRNGR-DIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYC-TETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSV 360
            QGDL D  YFDFISFAQYAT++  M+N    +F EK GAEG+   +QR  +  DN  LP  HA+ VGD++L Y  TE +   KLAP + +  SV  L  G  + + L++LN +MLD+ V
Sbjct:  136 QGDLADPVYFDFISFAQYATLSRFMKNPPGQVFVEKRGAEGEDFVIQRPQEYADNKVLPIVHAQLVGDRMLEYLSTEKY--EKLAPKVPEKPSVETLLSGIVQAVGLMKLNSFMLDFQV 252          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A6U4J7M3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4J7M3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.910e-19
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLR 330
            + QGDL + DYFD+ISF QYA I  +MR+GR  F EK+GAEG++RTV+R   L+DN  LP EH RRVG  +L++  E F      P++ +G++  +  + C  V   LR
Sbjct:   95 MTQGDLANPDYFDYISFCQYAVIGDSMRSGRLEFIEKIGAEGEQRTVRRAEGLRDNNLLPREHERRVGALLLSHLIERFPGR--FPLL-EGINARSSADLCGGVEQALR 200          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: R1CRK3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CRK3_EMIHU)

HSP 1 Score: 89.4 bits (220), Expect = 1.630e-18
Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDL-KDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYML 348
            +KQGD+ D +YFDF+S+ QYATIA  MR+GR +FEE + A G    V RDP L +DN RLP   + RVGDKIL    E +    LAP +    S + L EG   +  +   N Y+L
Sbjct:  174 VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYNNYLL 287          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: R1DSH8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSH8_EMIHU)

HSP 1 Score: 89.4 bits (220), Expect = 2.450e-18
Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDL-KDNGRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMNLLRLNFYML 348
            +KQGD+ D +YFDF+S+ QYATIA  MR+GR +FEE + A G    V RDP L +DN RLP   + RVGDKIL    E +    LAP +    S + L EG   +  +   N Y+L
Sbjct:  229 VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYNNYLL 342          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A8J5X5N7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X5N7_DIALT)

HSP 1 Score: 87.0 bits (214), Expect = 5.310e-18
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    7 KQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDL-KDNGRLPEEHARRVGDKILAYCTETF 240
            KQGDL D  YFDFISFAQY+T+A  MRNGR  + E VGAEG++   +R  D+ +DN  LP EH RRVGD I ++ +E +
Sbjct:   96 KQGDLQDPSYFDFISFAQYSTLAEEMRNGRLAYRELVGAEGEQVVRERPADVPRDNAALPAEHRRRVGDVIFSWASERY 174          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A0G4F5D5_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D5_VITBC)

HSP 1 Score: 86.3 bits (212), Expect = 1.790e-17
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    4 LKQGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGS 246
            + QGDL DA+YFDFISFAQY T+   M +G+ +F EK GA G+++ V+R   L DN  LP EH+RRVGD++L +  + F +
Sbjct:  125 ITQGDLADANYFDFISFAQYLTLYTEMCSGQQLFVEKTGATGEEQLVRRPAFLADNSLLPSEHSRRVGDRLLDFLIDRFNT 205          
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Match: A0A7S2MPG0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MPG0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.310e-16
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   10 QGDLMDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDNGRLPEEHARRVGDKILAYCTETFGSTKLAP--VIAQGLSVSNLQEGCDRVMNLLRLNFYMLDYSV----GSQVDRR 381
            QG+L D  YFDFIS+AQYATI+  M  G  +F E+VG +G+++ V+RD  +  N  LP  H++ VGD IL +  E +      P   IA G S   L    ++++ L  LN ++ D++V    G Q  R+
Sbjct:  182 QGELADPRYFDFISYAQYATISSCMNRGLFVFTEQVGVDGEEQVVRRDTTIT-NALLPAMHSKAVGDTILNWLLERYNKEGEQPRLPIAMGQSTDALVANINQLLGLFFLNNFLSDWTVRLVGGGQQGRQ 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128117.2072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJT5_9PHAE7.490e-6877.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI96_ECTSI3.180e-4056.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM91_9STRA2.720e-3150.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V3L1_9STRA2.070e-2047.06Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6U4J7M3_9STRA5.910e-1945.87Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
R1CRK3_EMIHU1.630e-1845.69Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DSH8_EMIHU2.450e-1845.69Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A8J5X5N7_DIALT5.310e-1855.70Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4F5D5_VITBC1.790e-1750.62Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S2MPG0_9STRA3.310e-1638.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128117contigH-elongata_contig128117:912..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue6.8e-28
Seed eggNOG ortholog2880.D8LI96
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGs2S59I@2759,COG0220@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_003680.1
Exons2
Model size396
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128117.2072.1prot_H-elongata_contig128117.2072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128117 933..1582 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.7232082-UTR-H-elongata_contig128117:911..9321622929760.7232082-UTR-H-elongata_contig128117:911..932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128117 912..932 +
1691679147.516538-UTR-H-elongata_contig128117:911..9321691679147.516538-UTR-H-elongata_contig128117:911..932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128117 912..932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.736014-CDS-H-elongata_contig128117:932..11301622929760.736014-CDS-H-elongata_contig128117:932..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128117 933..1130 +
1691679147.52813-CDS-H-elongata_contig128117:932..11301691679147.52813-CDS-H-elongata_contig128117:932..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128117 933..1130 +
1622929760.7506788-CDS-H-elongata_contig128117:1405..15821622929760.7506788-CDS-H-elongata_contig128117:1405..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128117 1406..1582 +
1691679147.5377715-CDS-H-elongata_contig128117:1405..15821691679147.5377715-CDS-H-elongata_contig128117:1405..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128117 1406..1582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128117.2072.1

>prot_H-elongata_contig128117.2072.1 ID=prot_H-elongata_contig128117.2072.1|Name=mRNA_H-elongata_contig128117.2072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MDADYFDFISFAQYATIAMAMRNGRDIFEEKVGAEGDKRTVQRDPDLKDN
GRLPEEHARRVGDKILAYCTETFGSTKLAPVIAQGLSVSNLQEGCDRVMN
LLRLNFYMLDYSVGSQVDRRILTVR
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mRNA from alignment at H-elongata_contig128117:912..1582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128117.2072.1 ID=mRNA_H-elongata_contig128117.2072.1|Name=mRNA_H-elongata_contig128117.2072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig128117:912..1582+ (Himanthalia elongata Himel1 dioecious)
AGACTAAAGCAGGGTGACTTGATGGATGCGGATTACTTCGATTTCATTAG TTTCGCGCAGTACGCCACGATTGCCATGGCGATGAGAAATGGACGAGATA TCTTCGAGGAAAAAGTAGGAGCCGAGGGCGACAAGAGAACTGTCCAGCGC GACCCAGACCTTAAGGATAACGGTCGCCTCCCCGAGGAGCATGCCCGGAG GGTCGGCGATAAGATCTTGGTGAGCGTACTTGGCGTCCCAAGTCTGTCTT AATAATAGGGCACGTGTCCTATGGAGCAATTTTGGGAGTAGTACTGTACC TCCAGTGGAACACGATCGTGAGCTGCTGGCAAAAGCATGATTACAAAGGC AACCTTTTACGCACAGCATCCGACGCGGCGTGCTAAGATTGCTGCGAAAC CATAGCTGCTAGAGCAACGGGACCCTTCCTCTTTTCGGGACATTTACGCA GCTGTCGTTACCACCCATGCCATGATCGCATGCTTACCCTTAAGGCCTAC TGCACGGAGACGTTCGGATCGACGAAGCTGGCGCCGGTGATCGCGCAGGG GCTCTCGGTGTCGAACTTGCAGGAGGGCTGCGATCGCGTCATGAACCTAT TGCGCCTCAACTTCTACATGCTAGACTACAGCGTGGGATCGCAAGTTGAT CGCCGCATCCTGACGGTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig128117:912..1582+

>mRNA_H-elongata_contig128117.2072.1 ID=mRNA_H-elongata_contig128117.2072.1|Name=mRNA_H-elongata_contig128117.2072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig128117:912..1582+ (Himanthalia elongata Himel1 dioecious)
ATGGATGCGGATTACTTCGATTTCATTAGTTTCGCGCAGTACGCCACGAT
TGCCATGGCGATGAGAAATGGACGAGATATCTTCGAGGAAAAAGTAGGAG
CCGAGGGCGACAAGAGAACTGTCCAGCGCGACCCAGACCTTAAGGATAAC
GGTCGCCTCCCCGAGGAGCATGCCCGGAGGGTCGGCGATAAGATCTTGAT
GGATGCGGATTACTTCGATTTCATTAGTTTCGCGCAGTACGCCACGATTG
CCATGGCGATGAGAAATGGACGAGATATCTTCGAGGAAAAAGTAGGAGCC
GAGGGCGACAAGAGAACTGTCCAGCGCGACCCAGACCTTAAGGATAACGG
TCGCCTCCCCGAGGAGCATGCCCGGAGGGTCGGCGATAAGATCTTGGCCT
ACTGCACGGAGACGTTCGGATCGACGAAGCTGGCGCCGGTGATCGCGCAG
GGGCTCTCGGTGTCGAACTTGCAGGAGGGCTGCGATCGCGTCATGAACCT
ATTGCGCCTCAACTTCTACATGCTAGACTACAGCGTGGGATCGCAAGTTG
ATCGCCGCATCCTGACGGTGAGAGCCTACTGCACGGAGACGTTCGGATCG
ACGAAGCTGGCGCCGGTGATCGCGCAGGGGCTCTCGGTGTCGAACTTGCA
GGAGGGCTGCGATCGCGTCATGAACCTATTGCGCCTCAACTTCTACATGC
TAGACTACAGCGTGGGATCGCAAGTTGATCGCCGCATCCTGACGGTGAGA
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