mRNA_H-elongata_contig128057.2069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig128057.2069.1
Unique Name	mRNA_H-elongata_contig128057.2069.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: D8LDW7_ECTSI (Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW7_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.230e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1

Query:    1 RGTPLRPGRMDVFLFELYDESLKHGDDQERHFGLFNIEGAQK 126
            +GTPLRPGR+DV+LFELYDE  + G   E+HFGLF+I G  K
Sbjct:  283 KGTPLRPGRLDVYLFELYDECQQDGAAHEKHFGLFDIGGCPK 324

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A438EHV3_VITVI (Glucan endo-1,3-beta-D-glucosidase n=5 Tax=Vitis TaxID=3603 RepID=A0A438EHV3_VITVI)

HSP 1 Score: 59.3 bits (142), Expect = 4.350e-9
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1

Query:    4 GTPLRPG-RMDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 132
            GTP RPG  ++VF+F+L+DE+LK GD+ ERHFG+F ++GA+  D
Sbjct:  320 GTPKRPGVGVEVFVFDLFDENLKSGDEYERHFGIFGLDGAKAYD 363

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A438JN72_VITVI (Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JN72_VITVI)

HSP 1 Score: 59.3 bits (142), Expect = 4.460e-9
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1

Query:    4 GTPLRPG-RMDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 132
            GTP RPG  ++VF+F+L+DE+LK GD+ ERHFG+F ++GA+  D
Sbjct:  113 GTPKRPGVGVEVFVFDLFDENLKSGDEYERHFGIFGLDGAKAYD 156

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A1Q3AZ45_CEPFO (Glucan endo-1,3-beta-D-glucosidase (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AZ45_CEPFO)

HSP 1 Score: 57.0 bits (136), Expect = 2.740e-8
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1

Query:    4 GTPLRPGR-MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 132
            GTP RPG  M+V+LFE++DE+ K GD+ ERHFG+F ++G +  D
Sbjct:  275 GTPKRPGETMEVYLFEIFDENEKSGDNYERHFGVFGLDGVKAYD 318

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A7N1A976_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N1A976_KALFE)

HSP 1 Score: 55.8 bits (133), Expect = 7.220e-8
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1

Query:    4 GTPLRPGRMDVFLFELYDESLKHGDDQERHFGLFNIEGAQK 126
            GTP +P  ++ F+F ++DE+LK GD+ ERHFG+FN  G+ K
Sbjct:  293 GTPRKPQPLETFIFAMFDENLKKGDEVERHFGIFNSNGSPK 333

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A498HKS3_MALDO (Glucan endo-1,3-beta-D-glucosidase n=3 Tax=Maleae TaxID=721813 RepID=A0A498HKS3_MALDO)

HSP 1 Score: 55.1 bits (131), Expect = 1.350e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1

Query:    4 GTPLRPG-RMDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 132
            GTP RPG  ++VFLF+L+DE+ KHG++ ERHFG+F  +G +  D
Sbjct:  285 GTPRRPGVGVEVFLFDLFDENEKHGEEFERHFGIFGPDGLKAYD 328

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: UPI001263C325 (glucan endo-1,3-beta-glucosidase-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263C325)

HSP 1 Score: 54.7 bits (130), Expect = 1.860e-7
Identity = 22/44 (50.00%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    4 GTPLRPGR-MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 132
            GTP RPG  ++V+LF+L+DE+ K GD+ E+HFG+F ++G++  D
Sbjct:  290 GTPKRPGEGVEVYLFDLFDENGKSGDEHEKHFGIFGLDGSKVYD 333

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A2N9IR82_FAGSY (Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IR82_FAGSY)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-7
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    4 GTPLRPGR-MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD 132
            GTPLRPG+ + V+LF+++DE+ K G++ E+HFG+F ++G +  D
Sbjct:  301 GTPLRPGKGVQVYLFDMFDENEKDGEEYEKHFGIFGLDGVKAYD 344

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: A0A0E0FYM0_ORYNI (Uncharacterized protein n=9 Tax=Oryza TaxID=4527 RepID=A0A0E0FYM0_ORYNI)

HSP 1 Score: 54.3 bits (129), Expect = 2.250e-7
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1

Query:    1 RGTPLRPGRMDVFLFELYDESLKHGDDQERHFGLFN 108
            +GTP RPGR++ ++F +++E+ K GD+ ERHFGLFN
Sbjct:  228 QGTPKRPGRIETYIFAMFNENDKRGDETERHFGLFN 263

[Close]

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Match: D6N2Z5_PHYED (Beta-1,3-glucanase n=1 Tax=Phyllostachys edulis TaxID=38705 RepID=D6N2Z5_PHYED)

HSP 1 Score: 54.3 bits (129), Expect = 2.540e-7
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1

Query:    1 RGTPLRPGRMDVFLFELYDESLKHGDDQERHFGLFN 108
            RGTP RPG ++ F+F +++E+ K GD+ ERHFGLFN
Sbjct:  289 RGTPKRPGALEAFIFAMFNENQKTGDEIERHFGLFN 324

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot

BLAST of mRNA_H-elongata_contig128057.2069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LDW7_ECTSI	1.230e-10	64.29	Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectoc...	[more]
A0A438EHV3_VITVI	4.350e-9	56.82	Glucan endo-1,3-beta-D-glucosidase n=5 Tax=Vitis T...	[more]
A0A438JN72_VITVI	4.460e-9	56.82	Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Vitis v...	[more]
A0A1Q3AZ45_CEPFO	2.740e-8	54.55	Glucan endo-1,3-beta-D-glucosidase (Fragment) n=1 ...	[more]
A0A7N1A976_KALFE	7.220e-8	51.22	Uncharacterized protein n=1 Tax=Kalanchoe fedtsche...	[more]
A0A498HKS3_MALDO	1.350e-7	54.55	Glucan endo-1,3-beta-D-glucosidase n=3 Tax=Maleae ...	[more]
UPI001263C325	1.860e-7	50.00	glucan endo-1,3-beta-glucosidase-like n=1 Tax=Pist...	[more]
A0A2N9IR82_FAGSY	1.870e-7	47.73	Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Fagus s...	[more]
A0A0E0FYM0_ORYNI	2.250e-7	55.56	Uncharacterized protein n=9 Tax=Oryza TaxID=4527 R...	[more]
D6N2Z5_PHYED	2.540e-7	58.33	Beta-1,3-glucanase n=1 Tax=Phyllostachys edulis Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig128057	contig	H-elongata_contig128057:320..454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	135
Cds size	108
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929760.0582688-UTR-H-elongata_contig128057:319..346	1622929760.0582688-UTR-H-elongata_contig128057:319..346	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig128057 320..346 +
1691679147.245373-UTR-H-elongata_contig128057:319..346	1691679147.245373-UTR-H-elongata_contig128057:319..346	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig128057 320..346 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929760.0771074-CDS-H-elongata_contig128057:346..454	1622929760.0771074-CDS-H-elongata_contig128057:346..454	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig128057 347..454 +
1691679147.253639-CDS-H-elongata_contig128057:346..454	1691679147.253639-CDS-H-elongata_contig128057:346..454	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig128057 347..454 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig128057.2069.1	prot_H-elongata_contig128057.2069.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig128057 347..454 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig128057:320..454+
coding sequence from alignment at H-elongata_contig128057:320..454+

protein sequence of mRNA_H-elongata_contig128057.2069.1

>prot_H-elongata_contig128057.2069.1 ID=prot_H-elongata_contig128057.2069.1|Name=mRNA_H-elongata_contig128057.2069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MDVFLFELYDESLKHGDDQERHFGLFNIEGAQKRD*

mRNA from alignment at H-elongata_contig128057:320..454+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig128057.2069.1 ID=mRNA_H-elongata_contig128057.2069.1|Name=mRNA_H-elongata_contig128057.2069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig128057:320..454+ (Himanthalia elongata Himel1 dioecious)
AGGGGAACCCCTCTCCGGCCCGGCCGCATGGACGTGTTTCTCTTCGAGCT
GTACGATGAGAGCCTCAAGCATGGGGATGACCAGGAGAGGCATTTCGGCC
TCTTCAACATCGAGGGGGCCCAGAAAAGGGATTAG

Coding sequence (CDS) from alignment at H-elongata_contig128057:320..454+

>mRNA_H-elongata_contig128057.2069.1 ID=mRNA_H-elongata_contig128057.2069.1|Name=mRNA_H-elongata_contig128057.2069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig128057:320..454+ (Himanthalia elongata Himel1 dioecious)
ATGGACGTGTTTCTCTTCGAGCTGTACGATGAGAGCCTCAAGCATGGGGA
TGACCAGGAGAGGCATTTCGGCCTCTTCAACATCGAGGGGGCCCAGAAAA
GGGATTAGATGGACGTGTTTCTCTTCGAGCTGTACGATGAGAGCCTCAAG
CATGGGGATGACCAGGAGAGGCATTTCGGCCTCTTCAACATCGAGGGGGC
CCAGAAAAGGGATTAG