mRNA_H-elongata_contig12805.2068.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12805.2068.1 vs. uniprot
Match: D7FJS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS0_ECTSI) HSP 1 Score: 295 bits (756), Expect = 7.460e-80 Identity = 318/990 (32.12%), Postives = 438/990 (44.24%), Query Frame = 1
Query: 43 KKKTGLRSTSKAPLHKIGAVTATGSGWLISGKLGVSNEEGSGNEGSGGGVEARRDESTSVKKTKRGVKKVNAIAIPTASGPGGWLASGTLGVPVDDEIEEDVGERVGTARGPVMLSEETQTKEDNEEIVRHGKESKLPPWAKPWTPPPESNVAVDPA-------PPQNEEDKEQDTTPATTPDWILASLGPGDDHAPAMIIADGGLGSKGGGLD-WLAQVVDPASASVCDTRGFLPAVTVASGSDWLHKAIVGGG-PKLKNKSSNPH--------ASIAPRDISWMAKMKRRSSMDLEDPCVEELVVEAKAKAVPGGWMQSGTLGAPDSVDEEKALEEARAASSLHSNVKSSGEVSIGRRPSLAGGLPSWAPARQEQTAVPDDTTFDTIXXXXXXXXXXXXXXXSGIDTETSQGLSXXXXXXXXXXKSVPSRMGE-----------------SGAQSTREDTKYEGCRTEKQQAQLAAIPE---WLAEAAGG----ASTKVLPGTV-YDSHDRGGGLNWLEAVINPNMKAAATPSAAKRGWSSMAPGGWIS-GKKGLAV---AEEDENSKHSETGMATKKAIKKMTPEGKTSIDARGPAGQVAGWLAVAISLGKLGVSTDASYEEYGGQSGEDVGGTKVATLSTQWEDGVI----GDTGRAPVSTLPPWAAKWKPPSP--DTLPKVEEKSTVEA-EAKPESSE--LDWIKNEMPGRPAKTSIGDSTSPGETVAA---GLGTTTQDNTGLDWLKKITTPG-GSSPHASVASPGYCLGAVKKKTGLHSTSKAPLHKIGAVTVTGSGWLTSGKLGVSN-EEGIDDGGSGCGVEDRRDESTSVRKPKRGVKKVSVIAIPTASGPGGWLASGTLGVPVHDDFEEDAGGGVGSTRGPIMLSEETQTEEDEEGIVKHGKESKPPPWAKPWTPPPESNVAVDPAPPQNEEDKEQVTIPATTPDWILASLGPGDDHAPAMIIADGGVGSKEGGLDWLAQ 2832
K+K +T+ A K AV A GWL S KLGVS EE S ++ G R +S KK RG ++ AS P + G PV+++ ETQT++D E + G KLPPWAKP+ PPP+ +VA D PP+ EE T + TPDWILASLG D A GG+ + GGG + WL+Q + + +P + DWL +A PK + +S P A++ +SWM ++KR+SSMDL+D VE V +AKAKA PGGW+Q G LGAPD++ EE LE+ARAAS L S S S GRRPSL+GG P WAPA++E AV D + T XXXXXXXXXXX T+ + GE +G S E T G ++Q + + + WL +AA A+ +P T DS + G +WL AV + +A +P+ + + APGGW+S GK GL +++D+ K S +G K K ARG E G D G V T+ TQ +D + G R LPPWA + PP P + +P + T+E E +P S W+ + G PA D+ + A G+G + N GL WL + + ++ AS + P + A + H+ S + + GW++SGKLGVS ++G D+ +G + D ++ KP++ K+ S ++ A GP GWL+SG LGVP D+ +ED G G P+M + ETQTEE+ E K K P ++E T PAT PDWILASLGP + A A G G DWL Q
Sbjct: 765 KRKPHATATAAA---KAAAVPAAPGGWLSSVKLGVSTEEDS-DQDDAGKTAGRSTKSKKKKKQARG-------SVSVASXXXXXXXXXXXXXP--EXXXXXXXXXGGGDSQPVLVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVAPDSTADSTAEIPPEKEE-----TDASATPDWILASLG--DQDADGF---SGGVPASGGGSNNWLSQAAEQEPGAGASD---MPNTGDTNAPDWLQQAAAPNAKPKHRQAASMPQQRPGIARKAAVPASPLSWMKQVKRQSSMDLDDQTVETTVAQAKAKAAPGGWLQIGVLGAPDALAEENELEQARAASPLTSTGPESRSRSEGRRPSLSGGPPPWAPAKEEG-AVGDSGSTTTSTHDVXXXXXXXXXXXXXXXXPTAVAAEAETTEQKEGSEEAAKEKGEPATSGVRVSDWLAAAATTGTASGEESTNALGEERDQQDGEASGGSDGLSWLTQAADSHKPSAAASGIPSTAGVDSSEGDAGADWL-AVAKSSGQAKRSPAVKRPSVGAAAPGGWMSSGKLGLPAGDGSDDDQAGKTSGSGGVAK---------AKXXXKARGSVSGTXXXXXXXXXXXXXXXXXXXXXXEEGSGGDNDRRGAAV-TIETQTDDDIEAATRGAAERGSTRKLPPWAKPYVPPDPIPEVVPDTAAELTIEKQELEPAGSGGVPSWLAA-VAGAPADEKHSDALGQERALEADEGGVGQASGGNDGLGWLTEAASKDTAAATPASTSVPDWLGDATSRGMTKHNKSSTAAKRASIKSAAPGGWMSSGKLGVSTGDDGSDEDQAG-----KTDRGSA--KPRKKKKQPSRGSVSAAGGPAGWLSSGALGVPAQDESDEDGGDSDGGR--PLMATTETQTEENIEEATKTANGPKLPXXXXXXXXXXXXXXXXXXXXXXXXXEQEHDT-PAT-PDWILASLGPDAEGAAAAPAPGGSPG------DWLVQ 1698
BLAST of mRNA_H-elongata_contig12805.2068.1 vs. uniprot
Match: A0A6H5KKG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG6_9PHAE) HSP 1 Score: 178 bits (451), Expect = 2.020e-42 Identity = 133/346 (38.44%), Postives = 173/346 (50.00%), Query Frame = 1
Query: 13 DWLTSTITCKKKKTGLRSTSKAPLHKIGAVTATGSGWLISGKLGVSNEEGSGNEGSGGGVEARRDESTSVKKTKRGVKKVNAIAIPTASGPGGWLASGTLGVPVDDEIEEDVGERVGTARGPVMLSEETQTKEDNEEIVRHGKESKLPPWAKPWTPPPESNVAVDPAPPQNEEDKEQDTTPATTPDWILASLGPGDDHAPAMIIADGGLGSKGGGLDWLAQVVDPASASVCDTRGFLPAVTVASGSDWLHKAIVGGGPKLKNK-----SSNP---HASIAPRDISWMAKMKRRSSMDLEDPCVEELVVEAKAKAVPGGWMQSGTLGAPDSVDEEKALEEARAASSL 1026
DWL + K RST+ A IG+ A GW+ SGKLG++ + S +E G + + S K + K+ ++P A GP GWL+SG LGVP E +E+ G+ G P+M + ETQT+++ E + KLPPWAKPWTP P TPDWILASL P + A A G G DW Q + A T G ++G DWL +A K N+ + P + A +SWM+ MKRRSSMDL D VEE + +AKAK +PGGW+Q G LGAPD+V+E ALEEARAASSL
Sbjct: 523 DWLAGAKSRGTTKHNKRSTA-AKRASIGS--AAPGGWMSSGKLGLATGDDSSDEDQAG-----KTDRGSAKPRMKKKKQQRRGSVPAAGGPAGWLSSGALGVPAQYESDENGGDSDGGR--PLMATTETQTEDNIEAATKTANGPKLPPWAKPWTPXPPXXXXXXXX--XXXXXXXXXXXXPGTPDWILASLDPDTEGAAAAPAPGGSPG------DWHVQE-NQAGGGPAGTGGG------STGPDWLQQATAASTGKPANRWRGAATQRPGGGRKAAAQSPLSWMSSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQIGALGAPDAVEEANALEEARAASSL 843
BLAST of mRNA_H-elongata_contig12805.2068.1 vs. uniprot
Match: A0A6H5KVL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL2_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.380e-36 Identity = 130/354 (36.72%), Postives = 177/354 (50.00%), Query Frame = 1
Query: 13 DWLTSTITCKKKKTGLRSTSKAPLHKIGAVTATGSGWLISGKLGVSNEEGSGNEGSGGGVEARRDESTSVKKTKRGVKKVNAI-AIPTASGPGGWLASGTLGVPVDDEIEEDVGERVGTARGPVMLSEETQTKEDNEEIVRHGKESKLPPWAKPWTPPPESNVAVDPAPPQNEED-------KEQDTTPATTPDWILASLGPGDDHAPAMIIADGGLGSKGGGL-DWLAQVVDPASASVCDTRGFLPAVTVASGSDWLHKAIVGGG-PKLKNKSSNPH--------ASIAPRDISWMAKMKRRSSMDLEDPCVEELVVEAKAKAVPGGWMQSGTLGAPDSVDEEKALEEARAAS 1020
DWL + + K +T+ A K AV A GWL SGKLGVS EE N+ G A R ST+ KK KK AI A+P A G G P++++ ETQT++D E + G KLPPWAKP+ PPP+ +V P++ D ++++T + PDWILA+LG D A GG+ + GGG +WL+ + + +P + DWL +A PK + +S P A++ +SWM ++KRRSSMDL+DP VE V +AKAKA PGGW+Q G LGAPD++ EE LE+ARAAS
Sbjct: 752 DWLAVAKSSGQTKRKPHATATAAA-KAAAVPAAPGGWLSSGKLGVSTEEE--NDQDDAGKTAGR--STTPKK-----KKKQAIGAVPVAXXXXXXXXXXXXXXXXXXXXXXXXG---GGDGQPILVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVV-----PESTADSXXXKTPEKEETDASAAPDWILAALG--DQDADGF---RGGVPASGGGSKNWLSHAAEQEPGAGASD---MPNTGDTNAPDWLQQAAAPSAKPKDRQAASIPQQRSGIARKAAVPASPLSWMKQVKRRSSMDLDDPTVETTVAQAKAKAAPGGWLQIGALGAPDALAEENELEQARAAS 1079 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12805.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12805.2068.1 >prot_H-elongata_contig12805.2068.1 ID=prot_H-elongata_contig12805.2068.1|Name=mRNA_H-elongata_contig12805.2068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=944bp GGRIDWLTSTITCKKKKTGLRSTSKAPLHKIGAVTATGSGWLISGKLGVSback to top mRNA from alignment at H-elongata_contig12805:1880..8463+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12805.2068.1 ID=mRNA_H-elongata_contig12805.2068.1|Name=mRNA_H-elongata_contig12805.2068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6584bp|location=Sequence derived from alignment at H-elongata_contig12805:1880..8463+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12805:1880..8463+ >mRNA_H-elongata_contig12805.2068.1 ID=mRNA_H-elongata_contig12805.2068.1|Name=mRNA_H-elongata_contig12805.2068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5664bp|location=Sequence derived from alignment at H-elongata_contig12805:1880..8463+ (Himanthalia elongata Himel1 dioecious)back to top |