mRNA_H-elongata_contig128044.2067.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.150e-35 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 190 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 361
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.280e-35 Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G PQ + E E + P RE +G++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 126 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADL-----GPQREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 297
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.640e-35 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 903 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1074
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.650e-35 Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P R+ +G++MW +T +RP++SFAA +A+ P HW A QK L YL
Sbjct: 1012 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYL 1183
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.840e-35 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 1282 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1453
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.870e-35 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 1302 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1473
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.900e-35 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 1445 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 1616
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE) HSP 1 Score: 137 bits (344), Expect = 3.190e-34 Identity = 75/179 (41.90%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D +AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA +A+ P HW A QK L ++
Sbjct: 538 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFM 709
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 137 bits (344), Expect = 3.770e-34 Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 1 LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
L GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D +AGTL Q YI +M ERF V TS IP+ G K E ++ + P RE VG++MW +T +RP++SFA +A+ P HW A QK L YL
Sbjct: 494 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYL 665
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 137 bits (344), Expect = 4.080e-34 Identity = 75/175 (42.86%), Postives = 103/175 (58.86%), Query Frame = 1
Query: 13 GFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSC---FPIKDLGEASYYLGCHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDRPQTDSEVEEMRQIPYREIVGALMWAATMTRPEISFAAHQLAKFNDNPGPTHWRAAQKALQYL 528
GF++ +ADPCVF +++ VVV++IV+YVDD+LVA + + E+ L S FP K+LGE ++ GC I D AGTL Q YI +M ERF V TS IP+ G K E EE + P RE +G++MW +T +RP++SFA + + P HW A QK L YL
Sbjct: 844 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYL 1011 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128044.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig128044.2067.1 >prot_H-elongata_contig128044.2067.1 ID=prot_H-elongata_contig128044.2067.1|Name=mRNA_H-elongata_contig128044.2067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp LEAKGFQRSQADPCVFWRILHGVVVVVIVVYVDDLLVANATKRDEDDLCSback to top mRNA from alignment at H-elongata_contig128044:1319..1858+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig128044.2067.1 ID=mRNA_H-elongata_contig128044.2067.1|Name=mRNA_H-elongata_contig128044.2067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=540bp|location=Sequence derived from alignment at H-elongata_contig128044:1319..1858+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig128044:1319..1858+ >mRNA_H-elongata_contig128044.2067.1 ID=mRNA_H-elongata_contig128044.2067.1|Name=mRNA_H-elongata_contig128044.2067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig128044:1319..1858+ (Himanthalia elongata Himel1 dioecious)back to top |