mRNA_H-elongata_contig12799.2066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12799.2066.1
Unique NamemRNA_H-elongata_contig12799.2066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: D7G3G7_ECTSI (ER membrane protein complex subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3G7_ECTSI)

HSP 1 Score: 454 bits (1168), Expect = 2.260e-159
Identity = 230/270 (85.19%), Postives = 249/270 (92.22%), Query Frame = 1 
Query:    1 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDGGLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQSQLGVGPAAMGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYPKQSVFDLVGMHDGNAAIFGANSDG 810
            MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLK++KPLDK+ELSYKQTLTRAKRLRGNGRFI  EAF+ RKGYFTAK+GGLLR++DLPGQ NPMANP+KMMGPMKSQMGFV TNMFMM FTSYFFEGFVLVRVPFPLTNRFKVMLQRGV LSTLDASYVSSTSWYFLVMFGL++ IN+FLR+   Q EAKVIQSQLGVG A+MGFDTKKV+ASEADSLDLAPH  +L+DVEKRLLGSKYP  SV+DL GMHD +AA+FGAN  G
Sbjct:    1 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKPLDKEELSYKQTLTRAKRLRGNGRFICREAFSRRKGYFTAKEGGLLRQEDLPGQANPMANPDKMMGPMKSQMGFVGTNMFMMAFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVQLSTLDASYVSSTSWYFLVMFGLKSVINLFLRETPVQHEAKVIQSQLGVGAASMGFDTKKVYASEADSLDLAPHEWLLNDVEKRLLGSKYPTTSVYDLAGMHDDSAAMFGANDGG 270
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A835YX73_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX73_9STRA)

HSP 1 Score: 239 bits (611), Expect = 6.690e-75
Identity = 131/269 (48.70%), Postives = 180/269 (66.91%), Query Frame = 1 
Query:    1 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAK-------------DG--GLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDA-AAQDEAKVIQSQLGVGPAAMGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYPKQSVFDL 759
            M  +HL LDPAIR+W +FPLM+++IL  VLRH +  L +S+KP D D+   +QTL RA+RLR NGRF+  +A+ +R+ YF ++             DG  G L+          +++P KMMGP+ +  GFV+TNMFM  F+SYF  GFV+V+VPFPLT+RFKVMLQRGV +STLD SYVSS SWY LVMFG+R  I + L ++ +AQDE + +Q+Q+G+G     FD KK F  E+  L ++ H+   D VE+RLLG +YP  S+ D+
Sbjct:    1 MVHQHLTLDPAIRNWCLFPLMVVMILASVLRHYVPMLFQSDKPADADDQKLRQTLGRAQRLRMNGRFLHGDAYRARRTYFISEEKEPSKDTEKGLGDGMKGALKNPPAADPTAAISDPSKMMGPLINNAGFVVTNMFMGAFSSYFMAGFVMVKVPFPLTSRFKVMLQRGVEISTLDPSYVSSVSWYMLVMFGMRNLIMLALGESGSAQDEQRAMQAQMGMGAPQPMFDAKKAFGEESTILGISLHAWAGDSVEQRLLGGRYPVPSLLDM 269
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A7S3NPS9_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPS9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.440e-70
Identity = 127/245 (51.84%), Postives = 164/245 (66.94%), Query Frame = 1 
Query:   10 EHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDGGLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFL-RDAAAQDEAKVIQSQLG----VGPAAMGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGS 729
            E L+LDPAIRDWVV P++++++L+G+ RH    LLKS + LD  E+ +KQ L R+ RLR  G+FI   +F  RK YF AKD G+L++       NPMANP  MM  MKSQ  +++ NM MM+  SYFF GFVLV++PFPLTNRFKVMLQRGV L+TLD SYVSS SWYFLV+FGLR    + L  D+ A DEA+  Q  +G    VG A   FD    +  E   L +A H+ +L+D E +LLG+
Sbjct:    6 EALLLDPAIRDWVVLPMVVLMVLMGLARHYAQQLLKSSQSLDAMEIQHKQRLMRSARLRARGKFIPASSFNLRKAYFIAKDSGILQKKVKKTAINPMANPMGMMDGMKSQALYMVPNMVMMSVISYFFHGFVLVKIPFPLTNRFKVMLQRGVDLATLDVSYVSSLSWYFLVLFGLRGLFKILLGEDSDALDEARATQMSMGMMHSVGGAHGPFDAPAAYKHERQELQMAQHTWLLEDAETKLLGN 250
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A7S1U0N1_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0N1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 5.770e-67
Identity = 128/260 (49.23%), Postives = 166/260 (63.85%), Query Frame = 1 
Query:    1 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDGGLLRRDDLPGQENPMANPEK--------MMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFL-RDAAAQDEAKVIQSQLGVGPAAMGFDT-----KKVFASEADSLDLAPHSCVLDDVEKRLLGSKYP 738
            M  E LVLDP+IR+WVV PL++M++ +GV+RH I  LLKS+  +D  ++  KQT+ RA+RLR  GRF++  A+A RK +FT KDGG LR       ENP A            MM  MK  + F++ NM MMTF SYFF GFVLV+VPF LTNRFKVMLQRGV LSTL  SYVSS SWYFL+M+GLR+   + L  D AA DEA+++Q                   KK+F +E   L +  + C LD++E++LLG +YP
Sbjct:   63 MADELLVLDPSIRNWVVMPLVMMMLFMGVVRHYIQGLLKSDPVMDAGDIKVKQTVARAQRLRRFGRFVTPRAYAMRKAHFTRKDGGALR-------ENPPAXXXXXXXXXXXAMMDGMKGNISFMVPNMIMMTFISYFFSGFVLVKVPFDLTNRFKVMLQRGVDLSTLHVSYVSSLSWYFLLMYGLRSVFRLVLGEDEAAADEARMMQXXXXXXXXXXXXXXGAPAPKKLFKAEMRGLRVNNYKCALDEIEQKLLGDRYP 315
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A7S2SE12_9STRA (ER membrane protein complex subunit 3 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SE12_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.820e-65
Identity = 117/242 (48.35%), Postives = 156/242 (64.46%), Query Frame = 1 
Query:   10 EHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDGGLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQSQLGVGPA-AMGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSK 732
            + LVLDP IR+WV+ P++L++ILV + R  +  LLK       + + + Q L+R+ +LR N R ++  AF  R  YF+ K GG LR+    G  NPM NPE MM  MK  +  +I N+ MM + SYFF GFVLV+VPF LT  FK MLQRGV L TLD SYVSS SWYFLVMFGLR    + L + +  D+ K++Q Q+G+G A AM FD KK + +E  +L    H+CV+DD E++ L SK
Sbjct:    8 DELVLDPKIRNWVLLPILLVMILVQIGRSWVQVLLKGNSSGANENVKHMQLLSRSAKLRANNRLLTPVAFNMRLDYFSKKGGGKLRQKVAGGAPNPMQNPEGMMDMMKGNLTMMIPNIVMMGWISYFFSGFVLVKVPFMLTEGFKQMLQRGVELQTLDVSYVSSLSWYFLVMFGLRGLFTLILGENSVPDDTKMMQQQMGMGGANAMQFDPKKAYKAEKTALKYVEHNCVIDDAEEKFLNSK 249
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A7S3M269_9STRA (ER membrane protein complex subunit 3 n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M269_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.070e-64
Identity = 113/263 (42.97%), Postives = 172/263 (65.40%), Query Frame = 1 
Query:    1 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKD---ELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDGGLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPL-TNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQSQLGV---GPAAMGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYPKQSVFDLVGM 768
            M  EHL+LDPAIRDWVV P+++M++LV + R+ +  L+KS   + ++   EL +KQ L +++RLR NGRF+++ AF  RK Y   K  G+LR + +PG  NPM+NP  M+  MK  + +++ N  MM F  YFF GFV +++PFPL +N FK+M+QRGV L++LD SYVSS SWYFLV FG+   + + +      D+AK++Q        G   MGF+ +  + +E ++L +A H  V D  EK+LLG++YP++S  + + +
Sbjct:    2 MAREHLLLDPAIRDWVVIPMVIMLVLVALGRNYVNQLIKSTPVITEESLGELRHKQVLQQSQRLRMNGRFLNDAAFNMRKSYMIRKKTGILR-EKVPGAANPMSNPMNMVDMMKGNIVYMLPNFAMMAFVGYFFSGFVCLKIPFPLPSNHFKLMMQRGVDLTSLDVSYVSSLSWYFLVTFGMNGIMRLIMGGDGEFDDAKMMQMXXXXXXGGAQQMGFNAEAAYKNEKEALGIAKHQWVADSAEKQLLGARYPEESSGEAIDL 263
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: K3WAK6_GLOUD (ER membrane protein complex subunit 3 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WAK6_GLOUD)

HSP 1 Score: 206 bits (525), Expect = 5.890e-62
Identity = 117/250 (46.80%), Postives = 159/250 (63.60%), Query Frame = 1 
Query:   13 HLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTA---KDG--GLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQSQLGVGPAA-MGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYPKQ 744
             ++LDP+IRDWVV P++++     ++RH +T LLK+EK    DE+    T+ RA+  R N +FI+ +AFA RK Y+TA   K G  G LR        N M NP  M+  MK  M F+++N  MM   SYFF GFVL +VPF LT +FK MLQRG+ L+TLD SYVSS SWYFLVMFG+R  +++ L + +A D++K +Q Q+G+G    +GFD  KV+  E  SL L  H   L+  EK+LLG   PK+
Sbjct:    3 EIILDPSIRDWVVLPMVIIFGCSAMVRHYVTLLLKTEKIATVDEMRPMNTVKRAQMTRINSKFITNDAFAMRKHYYTASQKKHGMKGALREKVKSEAMNQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVLAKVPFSLTQKFKSMLQRGIELNTLDVSYVSSVSWYFLVMFGMRGFLSLILGEQSASDDSKAMQMQMGMGAGPNVGFDAPKVYKQERVSLRLHSHEWFLEHAEKKLLGEPIPKK 252
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: W7TI20_9STRA (ER membrane protein complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI20_9STRA)

HSP 1 Score: 205 bits (521), Expect = 4.360e-61
Identity = 121/254 (47.64%), Postives = 159/254 (62.60%), Query Frame = 1 
Query:    4 GGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDG--GLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMF-LRDAAAQDEAKVIQSQ-----LGVGPAA-MGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYP 738
                L+LDPAIR+W V P+++ V+ + +LR  +T L K  KP + D+L  +Q L RA RLR NG  I +  F +RK +F  KD   G L  + +PG  NPM+NP  MM  +K Q  F +T M MM F+  FF GFVLV++PF LT  FK MLQRG+ LSTLDASYVS+TSW FLV FG++    +F   D   ++EA+V   Q     LG GP A MGFD  K++++    LD+  H   L+DVEKRLLG +YP
Sbjct:    9 SSRDLLLDPAIRNWGVLPILVFVLCINLLRAYLTHLGKGNKPPEIDDLRRRQVLARADRLRANGNNIHKAGFEARKAWFVGKDEQEGALSEEGVPGAVNPMSNPMGMMEMVKGQAYFGMTQMGMMQFSEMFFAGFVLVKIPFALTASFKGMLQRGIELSTLDASYVSATSWMFLVAFGVKDLQRLFSFDDGPMKEEARVYALQAGGVPLGGGPPAPMGFDCAKMYSAAKGGLDMTRHRFALEDVEKRLLGDRYP 262
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A484E2Y6_BRELC (ER membrane protein complex subunit 3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2Y6_BRELC)

HSP 1 Score: 203 bits (517), Expect = 8.340e-61
Identity = 117/248 (47.18%), Postives = 156/248 (62.90%), Query Frame = 1 
Query:   13 HLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTA---KDG--GLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQSQLGVGPAA-MGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYP 738
             ++LDP+IRDWVV P++++     ++RH +T LLK+EK    ++L    T+ RA+  R N +FI+ +AFA RK YFTA   KDG  G LR        N M NP  M+  MK  M F+++N  MM   SYFF GFVL +VPF LT +FK MLQRG+ L+TLD SYVSS SWYFLV FG+R  +++ L +A+A D+AK +Q Q+G+G    M FD  K +  E  SL L  H   L+  EK+LLG   P
Sbjct:    3 EIILDPSIRDWVVLPMIIIFGCSAMVRHYVTLLLKTEKMATVEQLLPLNTVKRAQITRINSKFIASDAFAMRKHYFTASQKKDGMKGALREKVKSEAMNQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVLAKVPFSLTQKFKTMLQRGIELNTLDVSYVSSVSWYFLVSFGMRGFLSLILGEASASDDAKAMQLQMGMGAGPNMAFDAPKAYKQERVSLRLQNHDWALEFAEKKLLGEPIP 250
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BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Match: A0A8K1CD93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD93_PYTOL)

HSP 1 Score: 202 bits (515), Expect = 1.770e-60
Identity = 118/250 (47.20%), Postives = 155/250 (62.00%), Query Frame = 1 
Query:   13 HLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELSYKQTLTRAKRLRGNGRFISEEAFASRKGYFTA---KDG--GLLRRDDLPGQENPMANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVMLQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQSQLGVGPAA-MGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYPKQ 744
             ++LDP+IRDWVV P++L++     LRH IT LLK+EK    DEL    T+ RA   R N +F+S +AFA R+ YFTA   K G  G LR        + M NP  M+  MK  M F+++N  MM   SYFF GFV+ +VPF LT +FK+MLQRG+ L+TLD SYVSS SWYFLVMFG+   + + L +  A D+ K +Q Q+G+G    +GFD  K++  E  SL L  H   L+  EKRLLG   PK+
Sbjct:    3 EIILDPSIRDWVVLPMVLIIGCSASLRHYITLLLKTEKIAAIDELRPMNTVRRAAVTRMNSKFVSADAFAMRRHYFTASQKKHGMRGALREKVKNEAMHQMMNPNSMLEMMKGNMTFMVSNFVMMGLMSYFFGGFVIAKVPFSLTQKFKLMLQRGIDLTTLDVSYVSSISWYFLVMFGMSGFLQLILGEKTANDDTKAMQMQMGMGAGPNVGFDAPKMYKQERVSLRLHQHEWALEHAEKRLLGDPIPKK 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12799.2066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G7_ECTSI2.260e-15985.19ER membrane protein complex subunit 3 n=2 Tax=Ecto... [more]
A0A835YX73_9STRA6.690e-7548.70ER membrane protein complex subunit 3 n=1 Tax=Trib... [more]
A0A7S3NPS9_9STRA1.440e-7051.84ER membrane protein complex subunit 3 n=1 Tax=Aure... [more]
A0A7S1U0N1_9STRA5.770e-6749.23ER membrane protein complex subunit 3 n=1 Tax=Phae... [more]
A0A7S2SE12_9STRA3.820e-6548.35ER membrane protein complex subunit 3 n=1 Tax=laby... [more]
A0A7S3M269_9STRA2.070e-6442.97ER membrane protein complex subunit 3 n=2 Tax=Spum... [more]
K3WAK6_GLOUD5.890e-6246.80ER membrane protein complex subunit 3 n=2 Tax=Pyth... [more]
W7TI20_9STRA4.360e-6147.64ER membrane protein complex subunit 3 n=2 Tax=Mono... [more]
A0A484E2Y6_BRELC8.340e-6147.18ER membrane protein complex subunit 3 n=1 Tax=Brem... [more]
A0A8K1CD93_PYTOL1.770e-6047.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12799contigH-elongata_contig12799:1242..7144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.8
Seed ortholog evalue6.3e-125
Seed eggNOG ortholog2880.D7G3G7
Preferred nameEMC3
KEGG koko:K02907
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001894,GO:0001895,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006457,GO:0006726,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009611,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016063,GO:0019538,GO:0022008,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0030176,GO:0030182,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034975,GO:0042051,GO:0042052,GO:0042060,GO:0042175,GO:0042440,GO:0042441,GO:0042461,GO:0042462,GO:0042592,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045494,GO:0046148,GO:0046154,GO:0046530,GO:0048066,GO:0048069,GO:0048468,GO:0048513,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048871,GO:0050896,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0072546,GO:0090596,GO:0097708,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG3188@1,KOG3188@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionUncharacterised conserved protein UCP010045, transmembrane eukaryotic
Ec32 orthologEc-19_004540.1
Exons7
Model size879
Cds size879
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.6286037-CDS-H-elongata_contig12799:1241..13881622929759.6286037-CDS-H-elongata_contig12799:1241..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 1242..1388 -
1691679147.0632324-CDS-H-elongata_contig12799:1241..13881691679147.0632324-CDS-H-elongata_contig12799:1241..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 1242..1388 -
1622929759.6427531-CDS-H-elongata_contig12799:1879..19511622929759.6427531-CDS-H-elongata_contig12799:1879..1951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 1880..1951 -
1691679147.0760963-CDS-H-elongata_contig12799:1879..19511691679147.0760963-CDS-H-elongata_contig12799:1879..1951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 1880..1951 -
1622929759.6574807-CDS-H-elongata_contig12799:2323..24011622929759.6574807-CDS-H-elongata_contig12799:2323..2401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 2324..2401 -
1691679147.0892642-CDS-H-elongata_contig12799:2323..24011691679147.0892642-CDS-H-elongata_contig12799:2323..2401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 2324..2401 -
1622929759.6891167-CDS-H-elongata_contig12799:3489..36271622929759.6891167-CDS-H-elongata_contig12799:3489..3627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 3490..3627 -
1691679147.097043-CDS-H-elongata_contig12799:3489..36271691679147.097043-CDS-H-elongata_contig12799:3489..3627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 3490..3627 -
1622929759.712524-CDS-H-elongata_contig12799:4595..47001622929759.712524-CDS-H-elongata_contig12799:4595..4700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 4596..4700 -
1691679147.1047232-CDS-H-elongata_contig12799:4595..47001691679147.1047232-CDS-H-elongata_contig12799:4595..4700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 4596..4700 -
1622929759.7271357-CDS-H-elongata_contig12799:5583..57671622929759.7271357-CDS-H-elongata_contig12799:5583..5767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 5584..5767 -
1691679147.1126347-CDS-H-elongata_contig12799:5583..57671691679147.1126347-CDS-H-elongata_contig12799:5583..5767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 5584..5767 -
1622929759.7429767-CDS-H-elongata_contig12799:6989..71441622929759.7429767-CDS-H-elongata_contig12799:6989..7144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 6990..7144 -
1691679147.1230109-CDS-H-elongata_contig12799:6989..71441691679147.1230109-CDS-H-elongata_contig12799:6989..7144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12799 6990..7144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12799.2066.1prot_H-elongata_contig12799.2066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12799 1242..7144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12799.2066.1

>prot_H-elongata_contig12799.2066.1 ID=prot_H-elongata_contig12799.2066.1|Name=mRNA_H-elongata_contig12799.2066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKSEKPLDKDELS
YKQTLTRAKRLRGNGRFISEEAFASRKGYFTAKDGGLLRRDDLPGQENPM
ANPEKMMGPMKSQMGFVITNMFMMTFTSYFFEGFVLVRVPFPLTNRFKVM
LQRGVLLSTLDASYVSSTSWYFLVMFGLRAAINMFLRDAAAQDEAKVIQS
QLGVGPAAMGFDTKKVFASEADSLDLAPHSCVLDDVEKRLLGSKYPKQSV
FDLVGMHDGNAAIFGANSDGGGRRGGAGGNSKGSGGSNSKTSK
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mRNA from alignment at H-elongata_contig12799:1242..7144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12799.2066.1 ID=mRNA_H-elongata_contig12799.2066.1|Name=mRNA_H-elongata_contig12799.2066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5903bp|location=Sequence derived from alignment at H-elongata_contig12799:1242..7144- (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCGAGCATCTCGTCCTCGACCCGGCCATCAGGGACTGGGTCGT
ATTTCCTCTCATGCTTATGGTTATCTTGGTGGGAGTTCTCCGCCACAATA
TTACGGCCTTACTGAAATCGGAGAAGCCCCTGGATAAGGATGAGCTCAGC
TACAAGTGAGTAGCATGGCTCTTCCTCGTCTTATAAAGGCTGAGGTAATT
AGCATAAGAGGCCGAGTTTTATATTATCTTAAGAATATATACCAATGGAG
CCTATGGAGATGAAAGTTGATAATATTGAAATCGAGCGACGCGCGACGCG
ATGTGAATAGCCACGTAATAACTGCTCGGATGTTCTCTGTTCCAGGAAAC
CAACCGAAAAACTCGAGAGGTTGCTGCTGTTTGGCGCAATGTCCCACATT
ACAACAGGTGTCTTGGCCTTGTGCCTGAGGAGGCATAGTAGGGCGCGTGA
TCAGTTTCGGGTAGCAATGCAATTAGTTGTTCTTGTGATGGGTCGTGTAC
GAGGATTGTAGGCTGTGTGATGTGAAGAATCGCTAACTGGCTGGCGGGAG
TTCGCCAAGGAGGCCACACAAGAGCACAGTCTGTAGTAGACTGATTTTTG
GTATTGCTACTACTGTACTGTTTTCGTCACAGAACCCTCGTAGCTACCAG
AAATTGGAACGACAAACGTAAAACAGCTGTTCACATCTCCCGTCCTCGGT
GTTTTGCAATCACTGTGCTGGAGTAGCTCAACAAAATAACATTTGCTGCT
CAAAGGTAGCAATGTACACATTCGAACCTGACGAAAGTTGGTCCCCTGGA
CTGCACCTCTTACGGCGCTAAGGTGTGGATGTTCAGAGGGTTGGAATGAG
TTTAAATTGTTTTTTAATAAATATAAGAGGTGCTGCTTGTTCTTTACCCT
GTTCTTCCTGCCTCGGCCACGGTTAGAGGGAGATGTCGGTTAGCAGCCCC
CTCCATCAACAGCTATTAATAGGGTATAATGCCTTGATCGCGATGGTGAT
AATAGCACCACCCCCCCCCCCCCCCCCCCCCTCCCCCCGGCACGCCATAG
TTGGCAGCGCGAGCCGTGACATGCACTGGGGCATCGATTCTCGTGGAACC
CAGCCCCTTCTTACTCTTTATCAAAAGCTCTTGTAGGGAGTCAAAAACAG
AGCGTATACCCACAACTGTTGGTCTGTTATAGCCTTTTTAACCCTTCGTG
GTCCAACCAGATGTCATGATATTCCGATCCTGCTGCCACCCCATGCAGGC
ATCATTTTTTTCGTTAGAAATCCGAGCCTTTACATACCGGGATAAAGTGC
TGGTGCGAGGGAACGGTTCGTGTGCCCCGGAGACTCAATCTTCACGACCT
TCGCGACCTTGCCCATTGTTCCCACAGGCAAACCCTGACAAGGGCGAAAC
GACTGAGAGGCAACGGACGTTTCATCTCCGAGGAGGCGTTCGCCAGCCGC
AAGGGGTACTTCACGGCCAAGGATGGGGGACTGCTACGGCGAGACGATTT
GCCGGGACAGGAGAACCCCATGGCAAACCCCGAGAAGATGATGGGGCCCA
TGAAGAGCCAGGTATCAGACGACAGCATTGCCCCAAGCAGGAGATCAATC
AGCGCTTTAAACCCCCCCCAGTTCTGTAGCACTGCGCAACTCTTTTAGTG
CAAGGGCAAAGCTCTCTTAAAAAACAAAACAAAAAAAGATCCACTCATTC
CAACCCTCCGAACTTCCACGCCTTCTTAGTACCGTGAGAGGTGCAGTCCA
GGGAACCAACTATCGTCAGGTCCGAATGTGTAGGTACATTGCTACATTAG
TTCCAGGCGTTGACGTCCTTCGTCAAACGATGGGACCCTGGTTTTGTTCA
TATCAATACTGTAGGATAGCTTACAAAATGTAGCACCCACCCTCTGCCCC
TCAGAGGAGAGACATCCCGGTCGATTCTGCCTCCGTGCTGAAGCTCTAAG
GACATGTGAAGATATAACGAACTTGGGCGGAGTTCAAGAGATTCCCGCTG
TAAATTTTGCAAAAAAAATCTACCTTGCAGCGTCGTGTAGAGAAAATATA
GCAGGGGTTGGGAAGGGAAAGGGGGGAAGAGGATTTAGAAAATCACCCGG
GGTATAGCATATATTGAATACTTTCACATTGTCATGTCACCTACGGTGTA
GCCTGCGATGACGTTTCGTGGTTCTAAAAGCCGAATTGTTCAAGGCCGAA
ACTTGAAGCGCAAAACGCTCGCGTCCTGATTCTCCCGTCGGCCGTGCGGC
GGTGGCCATCGTCCACGAAACATGTCACGCATTTTGTACGAGATTTATGA
TGTGCTACTTGACGCTCCCGTGCCGTCCGTGCTGTTGGCTGTTGCGCGCT
CTCTCTGGATTTTGAATTTGCTTCTACGGCCTCCTCTTCTGAACTGCGGG
GTCGATGAATGGCGTGCGCGCGGGCTGCGGCGGGACCAAGCCAGATGGGG
TTCGTGATCACCAACATGTTCATGATGACTTTCACCTCCTACTTCTTTGA
GGGCTTCGTGCTCGTCAGAGTCCCCTTTCCCCTCACCAATCGCTTCAAGG
TACTGCTATCCTCCCTCTCCGGAGATACCACGACAAGCTGTCAATAGTTA
AAGTTATATCCTGAAATGGGGATTTCCCCCGCCCGCCACGCTTACACACC
CTCCCGCAGAAGAGCTGGTTCGGGCTAGCAGGTAGCCATAATTATGAGTT
TTCTTGTGTTTGTTATCCGCTGTCTTCGCGCGAGGTGTTTGTGTCCGGGG
AAGGCGCGGAACGGGTTGCTGCCCACGCAGGCGGCCGATTTGTTTCTGAC
GTGGTACCCTCCGCGTACAACGCACGAACGACGAGGACATAAATACTCCA
TCTTTTATTCAAGTTTATTTTTGCAAGTCTTCACGTGCGCCACGCTTGGG
GACGATACGATGTACATTATTTTTTCCTCGCTTGACTATCTGTCGATAAT
TGTGCTTTACATTTCCCCCTCTTCCTTCATCTCGCGGACGCATGTAGTTG
ATGGTATGGCATGCAAAACTTGAGAACTTCTTCCCATTCGGTGATGTAGA
CTAATAGTAGTATTTTTTTTTTGTGAAAGACATGCGCGCGCACCCATGGC
GAACATTATATCCCGTCGCCGCGGATTCAGGACAAATGTTATGTTTTGTG
GTCGTTTGTATAAAAATGCGTCGTGTAACTCGAACTCTTGCTTCCCCCGC
TTAGTGTGTGGTAACGCCTCCATTCGTGACAAACCTTATACTCAACCTTT
TCTCGTTTCTCGCAAAATTGTTGCCTCTGCTGTTGAAAGAAACATGCAAA
GGAGCGTTAAACTCCCAAAGGTAGTATTTCACATACCATGTCCTCGCTTG
AACTCGAGCCAGAGATTCTTTGAAGATCAAAGGTGGCGTTTATGAGGTAG
CCTCTGCACTCCCCTCCACCCCCCTTTATATAGAGCCAGTAGCTTACTAC
AGCGTAACACGCATAACTTTAAACTGTCTCTTGGGTGGACGCTTCACTTC
GTGTTGGAATGTCGCAGGTCATGCTGCAAAGGGGGGTGCTCCTGAGCACC
CTGGACGCGAGCTACGTGTCGTCGACGTCTTGGTACTTCCTCGTGATGTT
CGGACTGAGAGCCGCCATCAACATGTTTCTGCGGGACGCGGCCGCTCAAG
ACGAGGTAAGCGCATCCAACCGCTTGCGGCTTTACTGAGTTTTTGATTTA
TTTTTTACTTTGGCCATTTTTCTAATTGATTTCTTACATAAGCTGATGTC
AAAATCCAGCTTGTGGTCACAAGGCAGAAAAAACATAATCCAGGAGGGGA
AAACGTTCAACGTACTCTCCAATATAAAAGAAAACGACAATGCATGGTGC
ATAGCACTAATACTCGGAAAAGGCGACATCTCCAGAGAAAAAAAGAAACA
TATAAAGAGAACACATATAGTTGTTAATGAACTGTGTGTGGCTGTCGACA
CGAAGACCTATCGGAGAATGATTGAATGAAGAGTGGCGGCGGCAGGAGGC
ATTTTTTATAATGACACACGGTAGCGAGCAAAAACTTGGCGCGGAACGCC
AACGATTCTGTTACCCCCCCCCCCCACATACACACACCTGGAAGTTAGTA
CCGACCCTGACCCGGAGTTTTCTACGCTAGACTCTTTTGGAGGCGTTTCT
TTACCGGTAAAGCTAAATCGCGGGAAAATTATTCTGACGACTAGAGGAAG
AAAAGGGAGGGGCGGGGTTATCAACTTTCAGTATTTCTGCCTCAACAAGT
TGAGGAAGCACTATTGATAGTTCGATTATTCGATATCAAGACGAGTCTTT
CACACTATAGCCTACGACACGTTTCACTAGAATATACCTGTTTTATGATA
GATTCATTTCATTTTATGTGTCTTGTGTTCACGTAATGTATGACGGTTAC
TGTCTTTTGCCGTCGGCTTGTGTTAAGTCTTGTTTGCTTTCAGAATATAT
ATATATATATATATATATATATATATATATATATATATACTGGCACTGTT
TATATAATCGGTAAACATTGTCGAATTATGCCTTTCGCCGCCGTACCGTA
GGATGAGTGACTAGTTTTTCCAACGTTCCCAAGTCATATTCTTTCCAGAA
GAGTTAGATCCTAAGGGCTTAAATTGACTTCATATTTTTCAAAAAGTATA
CAAATATAGGAGATGTAGTATTTAAGGGACCATGTGCCTTTGGTTTCACA
CGAAAATCGTCGCACCCCCCTCAACCAACTCCCTCCCGCGCAGGCGAAAG
TAATCCAATCCCAGCTAGGGGTGGGGCCGGCGGCCATGGGTTTCGATACC
AAGAAGGTCTTCGCCTCCGAGGTGAATCCTTCAAAACCGCCCCCCTGCCA
GCAACTGTGGCTCAAAAGCGAGAGAACCATCCGGTCTTCAATTTGCGCTT
TCGAACAGGGAACCGTGGTCACGAGTTAGACCTGTTTGCTGCGTCTAAGA
AAGTATAAAATAAAACATACCTAGAGAGCCTCCCACCCCCCGTCACGCCC
CCGCCTTCGTTTCCACCTGCGTGTGACTGAAACAAAATCATTTGATTTTA
ATATTCAGCTGCCCTGTTCTTCTGCCCGCCCGGCGAGAGCCCGTCTGAAC
CAAACCCCAAGCCTATTTTCTGAACGTGATATATATATTTTTCCTAAAAG
AAGAGTCCCGTGACATCGTTGCCCCGTCTCAATTCCCCGACAGGCGGATA
GTCTGGACCTCGCGCCCCACAGTTGCGTGTTGGACGACGTCGAAAAGCGC
CTCCTCGGGAGCAAGGTGAGTATGAAACGGAAGAGAAGTAACGCTTGTCG
TCGGCCCCTGCCCCTTAACGCCTCGGTGGGTATCAAAACCCATGGAGTGC
AGCAGAAACGACGCTCGTATAAGTCCGCCTTCCATGTCTGTGTATGTATG
AGCAATTCTTGTTCTTTCATCATTTCTATTTTTCGCTGTGCGTTCTGGGA
CTAAACATTTGGCTTTCCATTCCTCAGCACACATTTTTGCAGAAGGGGGG
TTTGGGGGGGGTTATTCATGGTTTTTCTTCAGGGGAAATGGTGAAGGAGA
GGCCCCTCTCTTCAATTTCTGTTCCGCACCCTGCACCCACGCTTTCTGTG
ACATCCAGGTGGGTACCGCGTTTCCCTTTCCCGCACAATTTCCGCGTTTA
TTGCAAGCGTCCTCTTCCTCTCTCCCTGGGGAGTTCGCTCGCTTCGCTGA
TTTTCTCTAAACATACTGTTTTTTGTGTGGCCCCGTTTCCCTTCCCTTGA
ATTCAGTACCCTAAGCAATCGGTTTTCGATTTGGTGGGGATGCACGACGG
CAACGCGGCGATCTTCGGTGCAAACAGCGATGGAGGCGGCAGACGTGGAG
GGGCAGGGGGAAACAGTAAGGGCAGCGGTGGCAGCAACAGCAAGACGAGC
AAG
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Coding sequence (CDS) from alignment at H-elongata_contig12799:1242..7144-

>mRNA_H-elongata_contig12799.2066.1 ID=mRNA_H-elongata_contig12799.2066.1|Name=mRNA_H-elongata_contig12799.2066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig12799:1242..7144- (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCGAGCATCTCGTCCTCGACCCGGCCATCAGGGACTGGGTCGT
ATTTCCTCTCATGCTTATGGTTATCTTGGTGGGAGTTCTCCGCCACAATA
TTACGGCCTTACTGAAATCGGAGAAGCCCCTGGATAAGGATGAGCTCAGC
TACAAATGGGAGGCGAGCATCTCGTCCTCGACCCGGCCATCAGGGACTGG
GTCGTATTTCCTCTCATGCTTATGGTTATCTTGGTGGGAGTTCTCCGCCA
CAATATTACGGCCTTACTGAAATCGGAGAAGCCCCTGGATAAGGATGAGC
TCAGCTACAAGCAAACCCTGACAAGGGCGAAACGACTGAGAGGCAACGGA
CGTTTCATCTCCGAGGAGGCGTTCGCCAGCCGCAAGGGGTACTTCACGGC
CAAGGATGGGGGACTGCTACGGCGAGACGATTTGCCGGGACAGGAGAACC
CCATGGCAAACCCCGAGAAGATGATGGGGCCCATGAAGAGCCAGGCAAAC
CCTGACAAGGGCGAAACGACTGAGAGGCAACGGACGTTTCATCTCCGAGG
AGGCGTTCGCCAGCCGCAAGGGGTACTTCACGGCCAAGGATGGGGGACTG
CTACGGCGAGACGATTTGCCGGGACAGGAGAACCCCATGGCAAACCCCGA
GAAGATGATGGGGCCCATGAAGAGCCAGATGGGGTTCGTGATCACCAACA
TGTTCATGATGACTTTCACCTCCTACTTCTTTGAGGGCTTCGTGCTCGTC
AGAGTCCCCTTTCCCCTCACCAATCGCTTCAAGATGGGGTTCGTGATCAC
CAACATGTTCATGATGACTTTCACCTCCTACTTCTTTGAGGGCTTCGTGC
TCGTCAGAGTCCCCTTTCCCCTCACCAATCGCTTCAAGGTCATGCTGCAA
AGGGGGGTGCTCCTGAGCACCCTGGACGCGAGCTACGTGTCGTCGACGTC
TTGGTACTTCCTCGTGATGTTCGGACTGAGAGCCGCCATCAACATGTTTC
TGCGGGACGCGGCCGCTCAAGACGAGGTCATGCTGCAAAGGGGGGTGCTC
CTGAGCACCCTGGACGCGAGCTACGTGTCGTCGACGTCTTGGTACTTCCT
CGTGATGTTCGGACTGAGAGCCGCCATCAACATGTTTCTGCGGGACGCGG
CCGCTCAAGACGAGGCGAAAGTAATCCAATCCCAGCTAGGGGTGGGGCCG
GCGGCCATGGGTTTCGATACCAAGAAGGTCTTCGCCTCCGAGGCGAAAGT
AATCCAATCCCAGCTAGGGGTGGGGCCGGCGGCCATGGGTTTCGATACCA
AGAAGGTCTTCGCCTCCGAGGCGGATAGTCTGGACCTCGCGCCCCACAGT
TGCGTGTTGGACGACGTCGAAAAGCGCCTCCTCGGGAGCAAGGCGGATAG
TCTGGACCTCGCGCCCCACAGTTGCGTGTTGGACGACGTCGAAAAGCGCC
TCCTCGGGAGCAAGTACCCTAAGCAATCGGTTTTCGATTTGGTGGGGATG
CACGACGGCAACGCGGCGATCTTCGGTGCAAACAGCGATGGAGGCGGCAG
ACGTGGAGGGGCAGGGGGAAACAGTAAGGGCAGCGGTGGCAGCAACAGCA
AGACGAGCAAGTACCCTAAGCAATCGGTTTTCGATTTGGTGGGGATGCAC
GACGGCAACGCGGCGATCTTCGGTGCAAACAGCGATGGAGGCGGCAGACG
TGGAGGGGCAGGGGGAAACAGTAAGGGCAGCGGTGGCAGCAACAGCAAGA
CGAGCAAG
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