mRNA_H-elongata_contig127971.2063.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127971.2063.1
Unique NamemRNA_H-elongata_contig127971.2063.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127971.2063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127971contigH-elongata_contig127971:198..650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size455
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.4630182-UTR-H-elongata_contig127971:197..2451622929759.4630182-UTR-H-elongata_contig127971:197..245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127971 198..245 +
1691679146.9855144-UTR-H-elongata_contig127971:197..2451691679146.9855144-UTR-H-elongata_contig127971:197..245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127971 198..245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.4785159-CDS-H-elongata_contig127971:245..6501622929759.4785159-CDS-H-elongata_contig127971:245..650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127971 246..650 +
1691679146.9967675-CDS-H-elongata_contig127971:245..6501691679146.9967675-CDS-H-elongata_contig127971:245..650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127971 246..650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127971.2063.1prot_H-elongata_contig127971.2063.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127971 246..650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127971.2063.1

>prot_H-elongata_contig127971.2063.1 ID=prot_H-elongata_contig127971.2063.1|Name=mRNA_H-elongata_contig127971.2063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MSGSVDGSKRARPWIRSGYSVALASLVASSSVATSVMALTLLTALSAASG
TVSLPVQSGLLEAMGISASCSRGVHLVNITRRGRKKRRDNPWWRETVRVR
ARFSSSGCCCRLASSSVPTSLHERLQPARCEEHEQ
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mRNA from alignment at H-elongata_contig127971:198..650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127971.2063.1 ID=mRNA_H-elongata_contig127971.2063.1|Name=mRNA_H-elongata_contig127971.2063.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig127971:198..650+ (Himanthalia elongata Himel1 dioecious)
GCAAGATTTACGCTGAACAAGGTGCTCTGTTGTTGTCTGTGGTAGTATAT
GAGTGGGAGCGTAGATGGCAGCAAGCGAGCGCGCCCATGGATTCGATCAG
GATATTCGGTGGCCCTAGCCTCATTGGTCGCATCCTCATCTGTTGCCACC
TCCGTGATGGCGCTCACCTTGTTGACAGCTTTGTCTGCCGCTAGCGGGAC
TGTCTCCCTCCCAGTCCAGTCAGGTCTCTTAGAAGCGATGGGGATTAGTG
CATCATGCAGTCGTGGGGTGCATCTGGTTAACATAACGCGAAGAGGACGT
AAAAAACGGCGGGATAATCCTTGGTGGAGGGAAACGGTGAGGGTAAGGGC
GCGTTTTTCGTCAAGCGGCTGCTGCTGTCGACTGGCTTCCTCCTCTGTTC
CCACGTCGCTCCATGAGCGACTTCAGCCAGCGCGATGCGAAGAACATGAG
CAA
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Coding sequence (CDS) from alignment at H-elongata_contig127971:198..650+

>mRNA_H-elongata_contig127971.2063.1 ID=mRNA_H-elongata_contig127971.2063.1|Name=mRNA_H-elongata_contig127971.2063.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig127971:198..650+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGGGAGCGTAGATGGCAGCAAGCGAGCGCGCCCATGGATTCGATC
AGGATATTCGGTGGCCCTAGCCTCATTGGTCGCATCCTCATCTGTTGCCA
CCTCCGTGATGGCGCTCACCTTGTTGACAGCTTTGTCTGCCGCTAGCGGG
ACTGTCTCCCTCCCAGTCCAGTCAGGTCTCTTAGAAGCGATGGGGATTAG
TGCATCATGCAGTCGTGGGGTGCATCTGGTTAACATAACGCGAAGAGGAC
GTAAAAAACGGCGGGATAATCCTTGGTGGAGGGAAACGGTGAGGGTAAGG
GCGCGTTTTTCGTCAAGCGGCTGCTGCTGTCGACTGGCTTCCTCCTCTGT
TCCCACGTCGCTCCATGAGCGACTTCAGCCAGCGCGATGCGAAGAACATG
AGCAAATGAGTGGGAGCGTAGATGGCAGCAAGCGAGCGCGCCCATGGATT
CGATCAGGATATTCGGTGGCCCTAGCCTCATTGGTCGCATCCTCATCTGT
TGCCACCTCCGTGATGGCGCTCACCTTGTTGACAGCTTTGTCTGCCGCTA
GCGGGACTGTCTCCCTCCCAGTCCAGTCAGGTCTCTTAGAAGCGATGGGG
ATTAGTGCATCATGCAGTCGTGGGGTGCATCTGGTTAACATAACGCGAAG
AGGACGTAAAAAACGGCGGGATAATCCTTGGTGGAGGGAAACGGTGAGGG
TAAGGGCGCGTTTTTCGTCAAGCGGCTGCTGCTGTCGACTGGCTTCCTCC
TCTGTTCCCACGTCGCTCCATGAGCGACTTCAGCCAGCGCGATGCGAAGA
ACATGAGCAA
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