mRNA_H-elongata_contig127967.2062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127967.2062.1
Unique NamemRNA_H-elongata_contig127967.2062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: D7FZ07_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ07_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.250e-26
Identity = 46/60 (76.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   22 AAGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDEV 201
            A GGGKPL  KE KDFRGP GLFKKGDWTC ACGNVNWERR  CNKC N KPN+ +TDE 
Sbjct:   59 AGGGGKPLLKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLAATDEA 118
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: G4Z0Q3_PHYSP (RanBP2-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z0Q3_PHYSP)

HSP 1 Score: 82.4 bits (202), Expect = 8.010e-17
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   25 AGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            A G KP P K   DFRGP GLF+ GDWTCN CGNVNWERR  CN C++ KP +   DE
Sbjct:  236 ASGEKPKP-KGGADFRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSAKPGMAGLDE 292
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A6A3KYH4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KYH4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.200e-17
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   31 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            GG+   PK   DFRGP GLF+ GDW CN CGNVNWERR  CN C++ KP +   DE
Sbjct:   45 GGEKPKPKGGVDFRGPPGLFQPGDWACNTCGNVNWERRNECNMCKSSKPGMTGLDE 100
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A662WRN9_9STRA (RanBP2-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRN9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-16
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   10 SAGSAAGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTD 195
            SAG A GG KP   K + DFRGP GLF+ GDWTCN CGNVNWERR  CN C++ KP +   D
Sbjct:  250 SAGGAGGGEKPKA-KGATDFRGPPGLFQAGDWTCNTCGNVNWERRNECNMCKSGKPTMSGLD 310
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A6A3Y7K4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y7K4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-16
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   31 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            GG+   PK   DFRGP GLF+ GDW CN CGN+NWERR  CN C++ KP +   DE
Sbjct:   46 GGEKPKPKGGADFRGPPGLFQPGDWACNTCGNINWERRNECNMCKSSKPGMTGLDE 101
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: F0WQ51_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQ51_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.640e-16
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   58 SKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            S DFRGP GLFK GDWTC  CGNVNWERRQ CN C+N KP +   DE
Sbjct:   62 SADFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGVDE 108
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A024GHB5_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHB5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.650e-16
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   58 SKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            S DFRGP GLFK GDWTC  CGNVNWERRQ CN C+N KP +   DE
Sbjct:   65 SADFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGADE 111
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A3M6V943_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V943_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-15
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   31 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            GG    PKE  D RGP GLF+ GDWTC  CGN+NWERR  CN C++ KP +   DE
Sbjct:   80 GGDKSKPKEGTDLRGPPGLFQSGDWTCITCGNINWERRSECNMCKSSKPGMPGLDE 135
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A0W8E0A8_PHYNI (Zinc finger Ran-binding domain-containing protein 2 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8E0A8_PHYNI)

HSP 1 Score: 79.0 bits (193), Expect = 1.440e-15
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   31 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            GG    PK   DFRGP GLF+ GDWTC  CGNVNWERR  CN C++ KP +   DE
Sbjct:  299 GGDKAKPKGGTDFRGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDE 354
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BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: H3HB99_PHYRM (RanBP2-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB99_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 1.820e-15
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   28 GGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 198
            GG KP P   S D RGP GLF+ GDWTCN CGNVNWERR  CN C++ KP +   DE
Sbjct:  293 GGEKPKP--TSADVRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSSKPGMSGLDE 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ07_ECTSI2.250e-2676.67RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
G4Z0Q3_PHYSP8.010e-1762.07RanBP2-type domain-containing protein n=1 Tax=Phyt... [more]
A0A6A3KYH4_9STRA8.200e-1758.93Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A662WRN9_9STRA1.060e-1661.29RanBP2-type domain-containing protein n=1 Tax=Noth... [more]
A0A6A3Y7K4_9STRA1.140e-1657.14Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
F0WQ51_9STRA1.640e-1670.212-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A024GHB5_9STRA1.650e-1670.212-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A3M6V943_9STRA1.100e-1557.14Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0W8E0A8_PHYNI1.440e-1558.93Zinc finger Ran-binding domain-containing protein ... [more]
H3HB99_PHYRM1.820e-1561.40RanBP2-type domain-containing protein n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127967contigH-elongata_contig127967:448..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.4e-21
Seed eggNOG ortholog2880.D7FZ07
KEGG koko:K13098,ko:K14651
KEGG Pathwayko03022,ko05202,map03022,map05202
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006366,GO:0006367,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023051,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1901796,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.RNA binding
EggNOG OGsKOG1995@1,KOG1995@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-06_002040.1
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.4274452-CDS-H-elongata_contig127967:447..6511622929759.4274452-CDS-H-elongata_contig127967:447..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127967 448..651 -
1691679146.9726996-CDS-H-elongata_contig127967:447..6511691679146.9726996-CDS-H-elongata_contig127967:447..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127967 448..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127967.2062.1prot_H-elongata_contig127967.2062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127967 448..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127967.2062.1

>prot_H-elongata_contig127967.2062.1 ID=prot_H-elongata_contig127967.2062.1|Name=mRNA_H-elongata_contig127967.2062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
GAPSAGSAAGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQN
CNKCQNVKPNIVSTDEVG
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mRNA from alignment at H-elongata_contig127967:448..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127967.2062.1 ID=mRNA_H-elongata_contig127967.2062.1|Name=mRNA_H-elongata_contig127967.2062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig127967:448..651- (Himanthalia elongata Himel1 dioecious)
GGCGCCCCATCAGCAGGATCTGCCGCTGGCGGGGGCAAACCGCTTCCTCC
AAAGGAGTCAAAGGACTTCCGAGGGCCAGAGGGATTATTCAAGAAGGGGG
ACTGGACATGTAATGCATGCGGCAACGTGAACTGGGAGCGGCGGCAAAAC
TGCAATAAGTGCCAAAACGTCAAGCCCAACATTGTCTCCACGGATGAGGT
GGGT
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Coding sequence (CDS) from alignment at H-elongata_contig127967:448..651-

>mRNA_H-elongata_contig127967.2062.1 ID=mRNA_H-elongata_contig127967.2062.1|Name=mRNA_H-elongata_contig127967.2062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig127967:448..651- (Himanthalia elongata Himel1 dioecious)
GGCGCCCCATCAGCAGGATCTGCCGCTGGCGGGGGCAAACCGCTTCCTCC
AAAGGAGTCAAAGGACTTCCGAGGGCCAGAGGGATTATTCAAGAAGGGGG
ACTGGACATGTAATGCATGCGGCAACGTGAACTGGGAGCGGCGGCAAAAC
TGCAATAAGTGCCAAAACGTCAAGCCCAACATTGTCTCCACGGATGAGGT
GGGTGGCGCCCCATCAGCAGGATCTGCCGCTGGCGGGGGCAAACCGCTTC
CTCCAAAGGAGTCAAAGGACTTCCGAGGGCCAGAGGGATTATTCAAGAAG
GGGGACTGGACATGTAATGCATGCGGCAACGTGAACTGGGAGCGGCGGCA
AAACTGCAATAAGTGCCAAAACGTCAAGCCCAACATTGTCTCCACGGATG
AGGTGGGT
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