mRNA_H-elongata_contig127906.2057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127906.2057.1
Unique NamemRNA_H-elongata_contig127906.2057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: D8LS26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS26_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.580e-17
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 NKLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            NK   AL DAERC+EVNPSWAKGYSR+GT LFR+G+H +AA AYSKG
Sbjct:  120 NKATEALMDAERCVEVNPSWAKGYSRMGTALFRLGRHDKAAAAYSKG 166          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A7S3TWU9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TWU9_9SPIT)

HSP 1 Score: 62.4 bits (150), Expect = 3.990e-10
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 KLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            + D+AL DAE CI + PSWAKGYSR G  LFR+ K A A DA+ KG
Sbjct:  546 QYDKALADAEDCIRLQPSWAKGYSRKGAALFRMDKLAGARDAFEKG 591          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A7S4BUN9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BUN9_CHRCT)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 KLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            + D+AL DAE CI + P+WAKGYSR G  LFR+ K A A DA+ KG
Sbjct:  545 QYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEKG 590          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A7S0JB72_9EUKA (Hypothetical protein n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0JB72_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 KLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            + D+AL DAE CI + P+WAKGYSR G  LFR+ K A A DA+ KG
Sbjct:  571 QYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEKG 616          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A512UN21_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UN21_9ASCO)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    7 LDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSK 138
             D+ALQDA++C E+NPSWAKGYSR+G   + +G    A +AY+K
Sbjct:   54 FDKALQDAQKCTEINPSWAKGYSRVGAAQYGLGNLDDAKNAYTK 97          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A7S3W520_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W520_EMIHU)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 KLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            + D+AL DAE CI + P+WAKGYSR G  LFR+ K A A DA+ +G
Sbjct:  546 QYDKALADAEECIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEQG 591          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A830HEN7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HEN7_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-9
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   16 ALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            AL DAE C+ +NP+W KGYSRLG  L  + K A+A DAYSKG
Sbjct:   55 ALADAETCVSINPTWPKGYSRLGAALQGMRKFAEAKDAYSKG 96          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A2A9M6Z3_9APIC (Tetratricopeptide repeat domain containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M6Z3_9APIC)

HSP 1 Score: 59.7 bits (143), Expect = 3.560e-9
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 NKLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            NKL+ ALQDAE C+++ P+W KGYSR G   FR+ K+ +A   Y KG
Sbjct:   55 NKLEEALQDAEVCVKLRPTWGKGYSRKGLAEFRMMKYKEAEATYQKG 101          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A7R9YQT0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YQT0_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-9
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   10 DRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            D ALQDAE+C+E+NP WAKGYSRLG  L+ +     A  AY  G
Sbjct:   53 DGALQDAEKCVELNPGWAKGYSRLGAALYGLESWGDAIKAYEAG 96          
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Match: A0A6P8I070_ACTTE (Stress-induced-phosphoprotein 1 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I070_ACTTE)

HSP 1 Score: 58.9 bits (141), Expect = 6.660e-9
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    4 KLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG 141
            K ++AL+DA++C+E+ P WAKGYSRLGT LF + ++  A  A+  G
Sbjct:   55 KYEQALEDAKKCVEIKPEWAKGYSRLGTALFFLKQYEAAEKAFEAG 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127906.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS26_ECTSI8.580e-1774.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3TWU9_9SPIT3.990e-1060.87Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S4BUN9_CHRCT1.020e-958.70Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0JB72_9EUKA1.020e-958.70Hypothetical protein n=2 Tax=Coccolithales TaxID=4... [more]
A0A512UN21_9ASCO1.910e-954.55Uncharacterized protein n=1 Tax=Metschnikowia sp. ... [more]
A0A7S3W520_EMIHU1.910e-956.52Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A830HEN7_9CHLO2.610e-961.90Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A2A9M6Z3_9APIC3.560e-953.19Tetratricopeptide repeat domain containing protein... [more]
A0A7R9YQT0_9CHLO4.870e-956.82Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A6P8I070_ACTTE6.660e-950.00Stress-induced-phosphoprotein 1 n=1 Tax=Actinia te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127906contigH-elongata_contig127906:1563..1703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D8LS26
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.017414-CDS-H-elongata_contig127906:1562..17031622929759.017414-CDS-H-elongata_contig127906:1562..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127906 1563..1703 -
1691679146.8179379-CDS-H-elongata_contig127906:1562..17031691679146.8179379-CDS-H-elongata_contig127906:1562..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127906 1563..1703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127906.2057.1prot_H-elongata_contig127906.2057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127906 1563..1703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127906.2057.1

>prot_H-elongata_contig127906.2057.1 ID=prot_H-elongata_contig127906.2057.1|Name=mRNA_H-elongata_contig127906.2057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
NKLDRALQDAERCIEVNPSWAKGYSRLGTTLFRIGKHAQAADAYSKG
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mRNA from alignment at H-elongata_contig127906:1563..1703-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127906.2057.1 ID=mRNA_H-elongata_contig127906.2057.1|Name=mRNA_H-elongata_contig127906.2057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig127906:1563..1703- (Himanthalia elongata Himel1 dioecious)
AACAAACTCGACAGGGCGCTGCAGGATGCCGAGAGGTGCATCGAGGTCAA TCCCTCTTGGGCGAAGGGGTACTCGCGCCTGGGCACCACGCTCTTCCGAA TCGGCAAGCACGCGCAAGCGGCCGATGCCTATTCGAAAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig127906:1563..1703-

>mRNA_H-elongata_contig127906.2057.1 ID=mRNA_H-elongata_contig127906.2057.1|Name=mRNA_H-elongata_contig127906.2057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig127906:1563..1703- (Himanthalia elongata Himel1 dioecious)
AACAAACTCGACAGGGCGCTGCAGGATGCCGAGAGGTGCATCGAGGTCAA
TCCCTCTTGGGCGAAGGGGTACTCGCGCCTGGGCACCACGCTCTTCCGAA
TCGGCAAGCACGCGCAAGCGGCCGATGCCTATTCGAAAGGTAACAAACTC
GACAGGGCGCTGCAGGATGCCGAGAGGTGCATCGAGGTCAATCCCTCTTG
GGCGAAGGGGTACTCGCGCCTGGGCACCACGCTCTTCCGAATCGGCAAGC
ACGCGCAAGCGGCCGATGCCTATTCGAAAGGT
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