mRNA_H-elongata_contig127888.2055.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127888.2055.1
Unique NamemRNA_H-elongata_contig127888.2055.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127888.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127888contigH-elongata_contig127888:209..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size161
Cds size159
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127888.2055.1prot_H-elongata_contig127888.2055.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127888 209..1496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.7626917-CDS-H-elongata_contig127888:208..2751622929758.7626917-CDS-H-elongata_contig127888:208..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127888 209..275 +
1691679146.726124-CDS-H-elongata_contig127888:208..2751691679146.726124-CDS-H-elongata_contig127888:208..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127888 209..275 +
1622929758.7827172-CDS-H-elongata_contig127888:929..10011622929758.7827172-CDS-H-elongata_contig127888:929..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127888 930..1001 +
1691679146.7333817-CDS-H-elongata_contig127888:929..10011691679146.7333817-CDS-H-elongata_contig127888:929..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127888 930..1001 +
1622929758.8020566-CDS-H-elongata_contig127888:1476..14961622929758.8020566-CDS-H-elongata_contig127888:1476..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127888 1477..1496 +
1691679146.7407455-CDS-H-elongata_contig127888:1476..14961691679146.7407455-CDS-H-elongata_contig127888:1476..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127888 1477..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127888.2055.1

>prot_H-elongata_contig127888.2055.1 ID=prot_H-elongata_contig127888.2055.1|Name=mRNA_H-elongata_contig127888.2055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
IPNELGKLTALSFLKLSSNQLSEPIPKELGRLTALTELVLDENLLSGSIP
NEL
back to top

mRNA from alignment at H-elongata_contig127888:209..1498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127888.2055.1 ID=mRNA_H-elongata_contig127888.2055.1|Name=mRNA_H-elongata_contig127888.2055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1290bp|location=Sequence derived from alignment at H-elongata_contig127888:209..1498+ (Himanthalia elongata Himel1 dioecious)
ATACCGAATGAATTGGGGAAACTCACCGCCCTTTCATTTCTCAAACTTTC
TAGCAACCAACTGAGCGGTAAGGCCAACATGCGTCCTATTGTATCTGGAA
GAGCACATTTTTTAATTAATTATACACATCATACTTAGTATTTTGCTGCT
ACCGAATATTAGTCGTCGCATATCGGCCCAGACTTGGTGTTAAAAATAAT
CTTCATAGTATTATATTCTAATGTTGGAGTAGAATTAGTCACGGGATTGT
CGTCCATTCCGCCAAAATATGGCTTCTAGATGTAAAATGTATTTTTCACG
GCTGCTTATATGACCGGAGTTACACATTTCCTAACGTTGTTATCTGATTC
TACCAAAACGTTTCCGCCGATTATTGACCCCAAGATAGATTTATGTAATC
TACGTAAAAGTTGTTTTAATGCTGGAGTTTAATTAGTCACGGCATGTCGT
CCATTCCGCTGAAAAATGGCTTCTTGCTCGTAAAATATATTTTCCCCGTG
TCCATACAGGCAATTCTAAACGCTTATGGTGTCCGCCTACCTCGTGAGAT
GTATACGGACCGATCGTATAGAGGGGAGAAAAACGGACATCGTTAAAATC
TAGACCTGTTTCGCGTTCTGTATATTTCACGCACATCCATGATGTGGTAC
ACTATAATACGTATTGTTAATATTGTTATGTGATGCGTTCCGTGTTTTCT
CCGCCGTCACTTTCTGCACAGAGCCGATACCAAAGGAGTTGGGGAGACTC
ACCGCTCTTACAGAGCTTGTACTTGATGAAAACCTACTAAGCGGTAAGGT
CAACATGCATTTAAAGACATTTTAAAATAAAAAGTATCGTTCAATTATTT
ACTATTTTGGAGTACGGTATGAAAATTCCCTAACGTTGATTTTTGCTTCT
ACCAAAAATTGCTCGTCGAATATCAGCCCGAATTTAGTGTTATAAATAAA
CTACATACAATTTGTTTCTAATCCTGAAGTTAAAATAGTCTCGGAATTTT
CGTCCATTTTTCACAAAAATGGCTTCTACGTGTGAAATATATTTCCCCCG
TGTCCCTACAGGCAATTCCAAACCATTATGGTGTCTGCCTAACTTGTGAG
ATACCTGTTCAATTTTGGGATTTGGACGAGAAAAAAAGTTATCGTTGAAA
TTTAGACCGTTTTCGCGTTGTGTATATATCACGCACATTAATTTGGTTTT
ACAATATGCAATGTTAATACCGTCACGTGATGCGCTCCGTGATTTTCTCT
GACGTATTCCCTGCACAGGGTCGATACCGAATGAGTTGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127888:209..1498+

>mRNA_H-elongata_contig127888.2055.1 ID=mRNA_H-elongata_contig127888.2055.1|Name=mRNA_H-elongata_contig127888.2055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig127888:209..1498+ (Himanthalia elongata Himel1 dioecious)
ATACCGAATGAATTGGGGAAACTCACCGCCCTTTCATTTCTCAAACTTTC
TAGCAACCAACTGAGCGATACCGAATGAATTGGGGAAACTCACCGCCCTT
TCATTTCTCAAACTTTCTAGCAACCAACTGAGCGAGCCGATACCAAAGGA
GTTGGGGAGACTCACCGCTCTTACAGAGCTTGTACTTGATGAAAACCTAC
TAAGCGAGCCGATACCAAAGGAGTTGGGGAGACTCACCGCTCTTACAGAG
CTTGTACTTGATGAAAACCTACTAAGCGGGTCGATACCGAATGAGTTGGG
TCGATACCGAATGAGTTG
back to top