mRNA_H-elongata_contig127865.2053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127865.2053.1
Unique NamemRNA_H-elongata_contig127865.2053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: D8LCC9_ECTSI (DUF547 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC9_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.820e-45
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKV 303
            DIGS+ +PVWKKPAGV+GG+ L+LDD+EN+KLR P +YPADPLLHACIVCASVSCPDVA  A+ PETL+ DMEA+MR FL N KKGLSL+KA G I LSK+
Sbjct:  137 DIGSVVAPVWKKPAGVVGGETLALDDVENVKLRDPKDYPADPLLHACIVCASVSCPDVALTAYKPETLQADMEANMRLFLTNPKKGLSLDKAKGVIKLSKI 237
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A7S1CNX3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNX3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.460e-24
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKV 303
            DIG+ +  VW +PAGV+ G+  SL  IE+  LR P  Y  D  LHACIVCAS+SCPDV   AF P  +   M+A++ +F+ANT KG +L++ AG+I LS +
Sbjct:  120 DIGNASVSVWNRPAGVVAGRQFSLQQIEDF-LRDPKPYGEDARLHACIVCASISCPDVRIGAFTPADVDAQMDAAVAAFVANTGKGAALDEGAGAIQLSPI 219
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A7S0ASA3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ASA3_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 5.330e-22
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   25 VWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKV 303
            VW  PAGVI G+M SL  IE+  LR P  +  DP LH CIVCAS+SCP++  +AF  E+++  M+A + + L NT+KG  LN+AA ++TLS V
Sbjct:   46 VWGMPAGVIAGKMYSLQQIEDY-LRNPVPWAEDPRLHTCIVCASLSCPNLPLRAFRTESVEAQMDAQVAALLGNTQKGCLLNQAARTVTLSMV 137
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A6U0J2U6_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A6U0J2U6_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 3.690e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPA------DPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLN-KAAGSITLSKV 303
            D GSLTSPVWK   G + G+ +SLDDIE++ LR+P   PA      D  +HA IVCAS+SCP++ P  ++P+++ + +  SM  FLAN KKGL  + KA GS    +V
Sbjct:  107 DAGSLTSPVWKDNIGKVSGREMSLDDIEHV-LRSPASVPAFANITEDARIHAAIVCASISCPNLQPWPYLPDSIDEQLTRSMTEFLANPKKGLHASCKADGSAATVRV 213
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A0J6YZB7_9BACT (DUF547 domain-containing protein n=1 Tax=Candidatus Nitromaritima sp. SCGC AAA799-A02 TaxID=1628278 RepID=A0A0J6YZB7_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 3.540e-20
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKVID 309
            D+GSL   VWK+PAG+IGG+  +L +IE+  LR   E    P +HA IVCASVSCPD+  ++F    L++ ++  M++FL N  KG+ ++   G +TLS + D
Sbjct:  100 DVGSLFRSVWKRPAGIIGGREYTLHEIEHGILRKMGE----PRIHAAIVCASVSCPDLLLESFSAGKLEEQLDNQMKTFLGNPGKGMQVDAGRGRVTLSSIFD 198
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A7C7Y6X0_9DELT (DUF547 domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7Y6X0_9DELT)

HSP 1 Score: 91.3 bits (225), Expect = 3.590e-20
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKV 303
            DIGS   PVWK+ AG IGG+  SLD+IEN  LR   E    P +H  IVCAS+SCP++A   +    L   ++AS+R++LA  +KGLSL++A G + LS++
Sbjct:  121 DIGSFFRPVWKREAGRIGGRGYSLDEIENEILRPMKE----PRIHGAIVCASISCPNLAQTPYRAPGLDAQLDASIRAWLARPEKGLSLDRAKGRLELSRI 217
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A2H0MJZ5_9BACT (DUF547 domain-containing protein n=1 Tax=Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_56_8 TaxID=1974049 RepID=A0A2H0MJZ5_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.190e-18
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKV 303
            D GSL SPVW KPAG + G   +L ++E+  LR   E    P +H  IVCASVSCPD+A +A++PE L D ++  MR+FL    KG+ L+ A   + LS +
Sbjct:  130 DAGSLFSPVWDKPAGEVAGVGRTLAEVEHGILRKMGE----PRIHVAIVCASVSCPDLAREAYLPEKLGDQLDRQMRAFLREPGKGMRLDAAGRRVFLSSI 226
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A1Z9BMY1_9BACT (DUF547 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1Z9BMY1_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.230e-18
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKVID 309
            DIGS   PVWK+ AG +G +  SLD+IE+  LR       DP +H  IVCAS+SCP++  + +  ET+ + ++ ++ S+LA  KKGLS++++A  + LS++ D
Sbjct:  146 DIGSFFRPVWKRVAGHVGERAYSLDEIEHEILRPM----GDPRIHGAIVCASISCPNLRREPYRAETVSEQLDQNVASWLARPKKGLSIDRSARIVRLSRIFD 244
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A350UX17_9BACT (DUF547 domain-containing protein n=2 Tax=Nitrospinae TaxID=1293497 RepID=A0A350UX17_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 1.240e-18
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKVID 309
            D+GSL   VWK+ AG++GG+  +L+ IE+  LR   E    P +H  IVCASVSCPD+A   +  + L + ++  MR FLAN  KG+ +      + LSK+ D
Sbjct:   90 DVGSLFKSVWKRNAGIVGGKDYTLNAIEHKILRKMNE----PRIHVAIVCASVSCPDLATDVYKADRLSEQLDVQMRKFLANPGKGMRVGTEGKKVFLSKIFD 188
[Close]
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Match: A0A7T0G4N3_9BACT (DUF547 domain-containing protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0G4N3_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-18
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVCASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSKV 303
            DIGS+   VW +PAG++GG+  +L+D+E+  LR   E    P +H  IVCASVSCPD+A +A+  E+L   +E     FL N KKGL +++    I +S +
Sbjct:  113 DIGSIFKSVWNRPAGIVGGKEYTLNDVEHEILRKMGE----PRIHVAIVCASVSCPDLAMEAYTAESLNQQLERQTALFLGNEKKGLKIDRKQRKIYVSSI 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127865.2053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC9_ECTSI1.820e-4573.27DUF547 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S1CNX3_9STRA6.460e-2449.50Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0ASA3_9DINO5.330e-2250.54Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A6U0J2U6_9EUKA3.690e-2147.22Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]
A0A0J6YZB7_9BACT3.540e-2043.69DUF547 domain-containing protein n=1 Tax=Candidatu... [more]
A0A7C7Y6X0_9DELT3.590e-2047.52DUF547 domain-containing protein n=1 Tax=Myxococca... [more]
A0A2H0MJZ5_9BACT1.190e-1845.54DUF547 domain-containing protein n=1 Tax=Nitrospin... [more]
A0A1Z9BMY1_9BACT1.230e-1841.75DUF547 domain-containing protein n=2 Tax=Bacteria ... [more]
A0A350UX17_9BACT1.240e-1841.75DUF547 domain-containing protein n=2 Tax=Nitrospin... [more]
A0A7T0G4N3_9BACT1.270e-1842.57DUF547 domain-containing protein n=1 Tax=Candidatu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127865contigH-elongata_contig127865:436..1795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2e-36
Seed eggNOG ortholog2880.D8LCC9
Preferred nameZRT3
KEGG koko:K07238
KEGG TC2.A.5.5
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0007034,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0034220,GO:0034486,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0070839,GO:0071577,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:0140147
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.221765-CDS-H-elongata_contig127865:435..5431622929758.221765-CDS-H-elongata_contig127865:435..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127865 436..543 +
1691679146.663417-CDS-H-elongata_contig127865:435..5431691679146.663417-CDS-H-elongata_contig127865:435..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127865 436..543 +
1622929758.242795-CDS-H-elongata_contig127865:1588..17951622929758.242795-CDS-H-elongata_contig127865:1588..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127865 1589..1795 +
1691679146.6724818-CDS-H-elongata_contig127865:1588..17951691679146.6724818-CDS-H-elongata_contig127865:1588..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127865 1589..1795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127865.2053.1prot_H-elongata_contig127865.2053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127865 436..1795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127865.2053.1

>prot_H-elongata_contig127865.2053.1 ID=prot_H-elongata_contig127865.2053.1|Name=mRNA_H-elongata_contig127865.2053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
DIGSLTSPVWKKPAGVIGGQMLSLDDIENLKLRTPTEYPADPLLHACIVC
ASVSCPDVAPKAFMPETLKDDMEASMRSFLANTKKGLSLNKAAGSITLSK
VIDA*
back to top

mRNA from alignment at H-elongata_contig127865:436..1795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127865.2053.1 ID=mRNA_H-elongata_contig127865.2053.1|Name=mRNA_H-elongata_contig127865.2053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1360bp|location=Sequence derived from alignment at H-elongata_contig127865:436..1795+ (Himanthalia elongata Himel1 dioecious)
GATATCGGGTCTCTAACCTCTCCTGTATGGAAGAAGCCGGCGGGAGTGAT
CGGTGGGCAAATGTTGTCGCTGGATGATATCGAGAACCTCAAGCTTCGGA
CACCCACGGTGGGATGCTGGCCCACCTGCTAGTTACTTGACGGACTTAGG
GGTAGCGTCGCTTTTTCTCGATCCGCGTCTGCACCTTCCCGAAGGCAACT
GCCCTAGCCTAGATTCGCTTATGGTCCGCAAGACTCTCATCGACCAAGCT
GCAAGAGCTTGTCGAGTTGGAAATCGCTGGGAGCCAGACTAATTATGTTT
CTTTAAATAATAAGCACAATAATAATAATAATCATCATAATAAAAAGTGA
TGAGTCATCTGATGCAAAAGAAAACCGTAACGTGTCGATCGTGGAAGTGA
CAAAACGATGGAAATGTCCACACACCAGCGACATTAAACGCGATCTAATT
ATTATTAACCCACCCGCTTCCCCCGTCCGTAGACGATATCTTCCCTCAGG
AAGCCTGCCATCGACGATCCGAACTTGGACATAGCCTCCGATACTGATCC
TGTCCGTGGCTGCATCTCACATATCTACTGTACCAGTAGTGGATGTGGGC
AAAAAGAGGCATACAGTACAATAATTGGTTCACGGGGTTACCTAAAATAG
AGAGCACCCGTTACTCAACCTACCTTAAGGACTGCTGGCTTCGTGCGGCA
GACTCTCGGTGGTAAACGCCATCAGTACGCAATTGCGTGACCTGATGAAG
TCGGGATTGGCCCGATGGCGGTTGACGGTGGAGATGGACACCGTCGTGGA
AAACAAGAGGATCCCGGGAGTACGCACCATGTTCAGCCTGGGTTGAAAAA
ATGAGCAGACTGACGCGGGACGGGATTACGGAACCCGTCTCGCGAGACCA
AATTGACAGGGAAATTAATTTTCCTTTTTTAATCAACTTGCACGCGACCG
CGCAAACCGGCATGACACGTAAGGGGGAGCCACGCCGGTTTGCGAATACT
CTCCCCTTATGGGCCTGTTCAGTTGACCACAAGCAAGAGGCAACCAAATC
AGGTTGATCCTTACTCTGCTATGTATGATGACGTCATGATCACACATGTA
ACGTGTCATTTAGATATTCGCTTGTTCATTTCGTCCTCTGCCCCCTGCCT
TAGGAATACCCGGCGGATCCCCTCCTTCACGCCTGCATCGTCTGTGCCAG
CGTTAGTTGCCCGGATGTTGCCCCGAAAGCGTTCATGCCCGAGACTTTGA
AGGATGACATGGAGGCCAGCATGAGAAGCTTCCTCGCGAATACCAAGAAG
GGCTTGTCGCTTAACAAGGCCGCTGGATCCATAACGCTCTCCAAGGTGAT
CGATGCTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127865:436..1795+

>mRNA_H-elongata_contig127865.2053.1 ID=mRNA_H-elongata_contig127865.2053.1|Name=mRNA_H-elongata_contig127865.2053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig127865:436..1795+ (Himanthalia elongata Himel1 dioecious)
GATATCGGGTCTCTAACCTCTCCTGTATGGAAGAAGCCGGCGGGAGTGAT
CGGTGGGCAAATGTTGTCGCTGGATGATATCGAGAACCTCAAGCTTCGGA
CACCCACGGATATCGGGTCTCTAACCTCTCCTGTATGGAAGAAGCCGGCG
GGAGTGATCGGTGGGCAAATGTTGTCGCTGGATGATATCGAGAACCTCAA
GCTTCGGACACCCACGGAATACCCGGCGGATCCCCTCCTTCACGCCTGCA
TCGTCTGTGCCAGCGTTAGTTGCCCGGATGTTGCCCCGAAAGCGTTCATG
CCCGAGACTTTGAAGGATGACATGGAGGCCAGCATGAGAAGCTTCCTCGC
GAATACCAAGAAGGGCTTGTCGCTTAACAAGGCCGCTGGATCCATAACGC
TCTCCAAGGTGATCGATGCTTGAGAATACCCGGCGGATCCCCTCCTTCAC
GCCTGCATCGTCTGTGCCAGCGTTAGTTGCCCGGATGTTGCCCCGAAAGC
GTTCATGCCCGAGACTTTGAAGGATGACATGGAGGCCAGCATGAGAAGCT
TCCTCGCGAATACCAAGAAGGGCTTGTCGCTTAACAAGGCCGCTGGATCC
ATAACGCTCTCCAAGGTGATCGATGCTTGA
back to top